Cmc08g0222261 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0222261
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol
Location	CMiso1.1chr08: 10799590 .. 10800960 (-)
RNA-Seq Expression	Cmc08g0222261
Synteny	Cmc08g0222261

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCAAAACTTCCATTATCTATATGGGGTCATGCTATTTTGCATGCAGTGTCCCTTATACGCATAAGACCGACATCTTATCATAAGTATTCCCCAACACAATTAGCTTATGGCCAGGAACCAAATATTTCTCATTTGCGAATTTTTGGTTGTGCAGTATATGTTCCAATTTCCCCACCACAACGTACTAAAATGGGACCTCAAAGAAGGTTAGGAATATATGTCGGATTTAAATCCCCATCAATTATTAGATATCTTGAACCCTTGACGGGAGATGTATTTACTGCACGATTCGCTGATTGTCATTTTAATGAGACAAATTTTCCAACATTAGGGGGAGGAATTAAGAAGTTGGAAAATGAAATTGCCTGGAATGTATCGTTATTGTCTCATTTAGATCCTCGTACAAAGCAATGTGAACTAGAAGTTCAAAAGATAATTCATTTACAAAGTGTAGCAAACCAAATGCCAGATGCATTTACAGATACTAAGAAAGTGACCAAGTCATATATTCCAGCTGCAAATGCTCCATCTATAATTGAAATCCCAACTCAGCAAGTTGATACAATTAATGAATCAACGCTGCGCCGAAAGCGTGGTAGACCGATGGGTTCAAAGGATAAAAATCCTCGAAAAAGAAAAGTGACCAATAGTCGAAATGACTTAATTGAAAATAGAAACATTCAAGAAAAAATCATGGACACGACTAGTGGTAAAAATGTAGAAGAGACTCAAGTATATGAAGATCACAATGAGATCTCGATAAATTATACTATGACAGGAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAACATTTTTGCGTATAATGTTGTACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTATTGACAAATGTCGTAATAGAAAGGATTGGCCCAAGTGGAAAGAAGTCATCCAACCAGAACTAAACTCACTCACCAAACGTGAAGTTTTTGGACCTGTAGTTTATACACCTAAAGGTGTAAAACCTGTGGGATTTAAATGGATATTTGTGCGTAAACGAAATGAAAATAATGAGGTTACTAGATATAAAGCACGACTTGTTGCACAAGGATTCTCTCAAAGACCAGACATTGATTTTGAGGAAACATATTCTCCTGTGGTGAATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAGCATACTTATATGGATCTTTGGAAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTAAATCATATAATTCAAACTCTATAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGGATGA

mRNA sequence

ATGAGAGCAAAACTTCCATTATCTATATGGGGTCATGCTATTTTGCATGCAGTGTCCCTTATACGCATAAGACCGACATCTTATCATAAGTATTCCCCAACACAATTAGCTTATGGCCAGGAACCAAATATTTCTCATTTGCGAATTTTTGGTTGTGCAGTATATGTTCCAATTTCCCCACCACAACGTACTAAAATGGGACCTCAAAGAAGGTTAGGAATATATGTCGGATTTAAATCCCCATCAATTATTAGATATCTTGAACCCTTGACGGGAGATGTATTTACTGCACGATTCGCTGATTGTCATTTTAATGAGACAAATTTTCCAACATTAGGGGGAGGAATTAAGAAGTTGGAAAATGAAATTGCCTGGAATGTATCGTTATTGTCTCATTTAGATCCTCGTACAAAGCAATGTGAACTAGAAGTTCAAAAGATAATTCATTTACAAAGTGTAGCAAACCAAATGCCAGATGCATTTACAGATACTAAGAAAGTGACCAAGTCATATATTCCAGCTGCAAATGCTCCATCTATAATTGAAATCCCAACTCAGCAAGTTGATACAATTAATGAATCAACGCTGCGCCGAAAGCGTGGTAGACCGATGGGTTCAAAGGATAAAAATCCTCGAAAAAGAAAAGTGACCAATAGTCGAAATGACTTAATTGAAAATAGAAACATTCAAGAAAAAATCATGGACACGACTAGTGGTAAAAATGTAGAAGAGACTCAAGTATATGAAGATCACAATGAGATCTCGATAAATTATACTATGACAGGAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAACATTTTTGCGTATAATGTTGTACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTATTGACAAATGTCGTAATAGAAAGGATTGGCCCAAGTGGAAAGAAGTCATCCAACCAGAACTAAACTCACTCACCAAACGTGAAGTTTTTGGACCTGTAGTTTATACACCTAAAGGTGTAAAACCTGTGGGATTTAAATGGATATTTGTGCGTAAACGAAATGAAAATAATGAGGTTACTAGATATAAAGCACGACTTGTTGCACAAGGATTCTCTCAAAGACCAGACATTGATTTTGAGGAAACATATTCTCCTGTGGTGAATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAGCATACTTATATGGATCTTTGGAAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTAAATCATATAATTCAAACTCTATAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGGATGA

Coding sequence (CDS)

ATGAGAGCAAAACTTCCATTATCTATATGGGGTCATGCTATTTTGCATGCAGTGTCCCTTATACGCATAAGACCGACATCTTATCATAAGTATTCCCCAACACAATTAGCTTATGGCCAGGAACCAAATATTTCTCATTTGCGAATTTTTGGTTGTGCAGTATATGTTCCAATTTCCCCACCACAACGTACTAAAATGGGACCTCAAAGAAGGTTAGGAATATATGTCGGATTTAAATCCCCATCAATTATTAGATATCTTGAACCCTTGACGGGAGATGTATTTACTGCACGATTCGCTGATTGTCATTTTAATGAGACAAATTTTCCAACATTAGGGGGAGGAATTAAGAAGTTGGAAAATGAAATTGCCTGGAATGTATCGTTATTGTCTCATTTAGATCCTCGTACAAAGCAATGTGAACTAGAAGTTCAAAAGATAATTCATTTACAAAGTGTAGCAAACCAAATGCCAGATGCATTTACAGATACTAAGAAAGTGACCAAGTCATATATTCCAGCTGCAAATGCTCCATCTATAATTGAAATCCCAACTCAGCAAGTTGATACAATTAATGAATCAACGCTGCGCCGAAAGCGTGGTAGACCGATGGGTTCAAAGGATAAAAATCCTCGAAAAAGAAAAGTGACCAATAGTCGAAATGACTTAATTGAAAATAGAAACATTCAAGAAAAAATCATGGACACGACTAGTGGTAAAAATGTAGAAGAGACTCAAGTATATGAAGATCACAATGAGATCTCGATAAATTATACTATGACAGGAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAACATTTTTGCGTATAATGTTGTACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTATTGACAAATGTCGTAATAGAAAGGATTGGCCCAAGTGGAAAGAAGTCATCCAACCAGAACTAAACTCACTCACCAAACGTGAAGTTTTTGGACCTGTAGTTTATACACCTAAAGGTGTAAAACCTGTGGGATTTAAATGGATATTTGTGCGTAAACGAAATGAAAATAATGAGGTTACTAGATATAAAGCACGACTTGTTGCACAAGGATTCTCTCAAAGACCAGACATTGATTTTGAGGAAACATATTCTCCTGTGGTGAATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAGCATACTTATATGGATCTTTGGAAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTAAATCATATAATTCAAACTCTATAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGGATGA

Protein sequence

MRAKLPLSIWGHAILHAVSLIRIRPTSYHKYSPTQLAYGQEPNISHLRIFGCAVYVPISPPQRTKMGPQRRLGIYVGFKSPSIIRYLEPLTGDVFTARFADCHFNETNFPTLGGGIKKLENEIAWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAANAPSIIEIPTQQVDTINESTLRRKRGRPMGSKDKNPRKRKVTNSRNDLIENRNIQEKIMDTTSGKNVEETQVYEDHNEISINYTMTGKRWNRINVVVDNIFAYNVVHNIIHENEDYEPKSIDKCRNRKDWPKWKEVIQPELNSLTKREVFGPVVYTPKGVKPVGFKWIFVRKRNENNEVTRYKARLVAQGFSQRPDIDFEETYSPVVNAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPEGFKIPKSYNSNSIELCSIKLQRSLYGLKQSG

Homology

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BLAST of Cmc08g0222261 vs. NCBI nr
Match: AAK84483.1 (putative copia-like polyprotein [Solanum lycopersicum])

HSP 1 Score: 626.3 bits (1614), Expect = 2.0e-175
Identity = 307/457 (67.18%), Postives = 369/457 (80.74%), Query Frame = 0


Query: 1   MRAKLPLSIWGHAILHAVSLIRIRPTSYHKYSPTQLAYGQEPNISHLRIFGCAVYVPISP 60
           MR KL +S+WGHAILHA +L+RIRPT+YH++SP QL +GQEPNISHLR+FGCAVYVPI+P
Sbjct: 79  MRTKLSVSMWGHAILHAATLVRIRPTNYHEFSPLQLTFGQEPNISHLRVFGCAVYVPIAP 138

Query: 61  PQRTKMGPQRRLGIYVGFKSPSIIRYLEPLTGDVFTARFADCHFNETNFPTLGGGIKKLE 120
           PQRTKMGPQRRLGIYVG++SPSII+YLEP+TGD+F  RFADCHF+E+ +PTLGG  K L 
Sbjct: 139 PQRTKMGPQRRLGIYVGYESPSIIKYLEPMTGDLFKVRFADCHFDESVYPTLGGEHKSLG 198

Query: 121 NEIAWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAANAPSI 180
            EI WN S LSHLDPRT QCE EVQ+II+LQ++ANQ+PDAFT+  ++TKSYIPA NAP  
Sbjct: 199 KEIDWNSSSLSHLDPRTNQCEQEVQRIIYLQNIANQLPDAFTNLPRITKSYIPAVNAPVR 258

Query: 181 IEIPTQQVDTINESTLRRKRGRPMGSKDKNPRKRKVTNSRNDLIENRNIQEKIMDTTSGK 240
           ++IPT Q+   NES    KRGRP+GSKDKNPRKRK  N ++D      ++E   D T   
Sbjct: 259 VDIPTGQIVKANESRPHLKRGRPIGSKDKNPRKRKGINDQDD----HGLKEISQDETQVI 318

Query: 241 NVEETQV-YEDHNEISINYTMTGKRWNRINVVVDNIFAYNVVHNIIHENEDYEPKSIDKC 300
             +E +V    +NEIS+NY  T K WNR NVV+DNIFAYNV   I+ ++ED EPKS+ +C
Sbjct: 319 THDEEEVRTSQNNEISMNYVSTRKFWNRNNVVIDNIFAYNVAIEIMQQDEDSEPKSVHEC 378

Query: 301 RNRKDWPKWKEVIQPELNSLTKREVFGPVVYTPKGVKPVGFKWIFVRKRNENNEVTRYKA 360
           R R DWPKWK+ IQ EL SL KRE FGP++ TP+G+KPVG+KWIFVRKRNE  EV RYKA
Sbjct: 379 RQRNDWPKWKDAIQAELASLEKRESFGPIIRTPEGIKPVGYKWIFVRKRNEKGEVMRYKA 438

Query: 361 RLVAQGFSQRPDIDFEETYSPVVNAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEI 420
           RLVAQGFSQRP ID+ ETYSPVV+AIT RYLI+LAV E L+M LMDVVTAYLYGSL++ I
Sbjct: 439 RLVAQGFSQRPGIDYMETYSPVVDAITFRYLINLAVYEKLEMRLMDVVTAYLYGSLDHNI 498

Query: 421 YMKIPEGFKIPKSYNSNSIELCSIKLQRSLYGLKQSG 457
           +MKIPE FK+P++Y  +S E CSIKLQ+SLYGLKQSG
Sbjct: 499 FMKIPEAFKVPETY-KDSRETCSIKLQKSLYGLKQSG 530

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BLAST of Cmc08g0222261 vs. NCBI nr
Match: RVW26456.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 615.1 bits (1585), Expect = 4.7e-172
Identity = 307/487 (63.04%), Postives = 376/487 (77.21%), Query Frame = 0


Query: 1   MRAKLPLSIWGHAILHAVSLIRIRPTSYHKYSPTQLAYGQEPNISHLRIFGCAVYVPISP 60
           M+ KLP S WGHAI+HA +L+RIRPT+YH+YSP+QL  G++PNISHLRIFGCAVYVPI+P
Sbjct: 37  MKTKLPTSAWGHAIMHAAALVRIRPTTYHEYSPSQLVLGKQPNISHLRIFGCAVYVPIAP 96

Query: 61  PQRTKMGPQRRLGIYVGFKSPSIIRYLEPLTGDVFTARFADCHFNETNFPTLG--GGIKK 120
            QRTKMGPQRRLG+YVGF SPSII+YLEPLTGDVFTARFADCHFNE+ FP+LG    I +
Sbjct: 97  TQRTKMGPQRRLGVYVGFDSPSIIKYLEPLTGDVFTARFADCHFNESVFPSLGREKSIPE 156

Query: 121 LENEIAWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAANAP 180
              EI+W  S ++HLDPRT QCELEVQ+IIHLQ++ NQ+PDAF DTKKVTKS+IPAAN P
Sbjct: 157 ERREISWKTSTMTHLDPRTNQCELEVQRIIHLQNLVNQLPDAFIDTKKVTKSHIPAANTP 216

Query: 181 SIIEIPTQQVDTINESTLRRKRGRPMGSKDKNPRKRKVTNSRNDL--------------- 240
           + I++P  Q+   NES +R KRGRP+GSKD  PRKR+       L               
Sbjct: 217 ARIDVPVGQL--TNESKIRLKRGRPVGSKDVTPRKRRTQEKLGTLEETIKMTDQFKIDKS 276

Query: 241 --IENRNIQEKI-------MDTTSGKNV-----EETQVYEDHNEISINYTMTGKRWNRIN 300
             +E   I +K         +T    ++     EE QV E + EIS++Y  TG++W+R N
Sbjct: 277 IALEEAQIMQKAPEEVHIEQETPEDPHIEREAPEEAQVPE-NCEISVSYVQTGEKWDRNN 336

Query: 301 VVVDNIFAYNVVHNIIHENEDYEPKSIDKCRNRKDWPKWKEVIQPELNSLTKREVFGPVV 360
           +V++NIFA+ V  +II  +ED EP+++++CR+R DWPKWKE IQ ELNSLTKREVFGPVV
Sbjct: 337 IVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLTKREVFGPVV 396

Query: 361 YTPKGVKPVGFKWIFVRKRNENNEVTRYKARLVAQGFSQRPDIDFEETYSPVVNAITLRY 420
            TP+ VKPVG+KW+FVRKRNENNE+ RYKARLVAQGFSQRP ID+EETYSPV++AIT R+
Sbjct: 397 QTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDAITFRF 456

Query: 421 LISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPEGFKIPKSYNSNSIELCSIKLQRSL 457
           LISLAV E LDM LMDV+TAYLYGS++N+IYMKIPEGFK+P + N+    + SIKLQRSL
Sbjct: 457 LISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIKLQRSL 516

[Close]

BLAST of Cmc08g0222261 vs. NCBI nr
Match: RVX16158.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 615.1 bits (1585), Expect = 4.7e-172
Identity = 309/497 (62.17%), Postives = 379/497 (76.26%), Query Frame = 0


Query: 1   MRAKLPLSIWGHAILHAVSLIRIRPTSYHKYSPTQLAYGQEPNISHLRIFGCAVYVPISP 60
           M+ KLP S WGHAI+HA +L+RIRPT+YH+YSP+QL  G++PNISHLRIFGCAVYVPI+P
Sbjct: 220 MKTKLPTSAWGHAIMHAAALVRIRPTTYHEYSPSQLVLGKQPNISHLRIFGCAVYVPIAP 279

Query: 61  PQRTKMGPQRRLGIYVGFKSPSIIRYLEPLTGDVFTARFADCHFNETNFPTLG--GGIKK 120
            QRTKMGPQRRLG+YVGF SPSIIRYLEPLTGDVFTARFADCHFNE+ FP+LG    I +
Sbjct: 280 TQRTKMGPQRRLGVYVGFDSPSIIRYLEPLTGDVFTARFADCHFNESVFPSLGREKSIPE 339

Query: 121 LENEIAWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAANAP 180
              EI+W  S ++HLDPRT QCELEVQ+IIHLQ++ANQ+PDAF DTKKVTKS+IPAAN P
Sbjct: 340 ERREISWKTSTMTHLDPRTNQCELEVQRIIHLQNLANQLPDAFIDTKKVTKSHIPAANTP 399

Query: 181 SIIEIPTQQVDTINESTLRRKRGRPMGSKDKNPRKRKVTNSRNDL--------------- 240
           + I++P  Q+   NES +R KRGRP+GSKD  PRKR+     + L               
Sbjct: 400 ARIDVPVGQL--TNESKIRLKRGRPVGSKDVTPRKRRTQEKLSTLEEAIKMTDQFKIDKS 459

Query: 241 --IENRNIQEKI-----------------MDTTSGKNV-----EETQVYEDHNEISINYT 300
             +E   I +K                   +T+   ++     EE QV E + EIS++Y 
Sbjct: 460 IALEEAQIMQKAPEEVHIEQEVPEEAHIEQETSEDPHIEREAPEEAQVPE-NCEISVSYV 519

Query: 301 MTGKRWNRINVVVDNIFAYNVVHNIIHENEDYEPKSIDKCRNRKDWPKWKEVIQPELNSL 360
            TG++W+R N+V++NIFA+ V  +II  +ED EP+++++CR+R DWPKWKE IQ ELNSL
Sbjct: 520 QTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSL 579

Query: 361 TKREVFGPVVYTPKGVKPVGFKWIFVRKRNENNEVTRYKARLVAQGFSQRPDIDFEETYS 420
           TKREVFGPVV TP+ VKPVG+KW+FVRKRNENNE+ RYKARLVAQGFSQRP ID+EETYS
Sbjct: 580 TKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYS 639

Query: 421 PVVNAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPEGFKIPKSYNSNSIE 457
           PV++AIT R+LISLAV E LDM LMDV+TAYLYGS++N+IYMKIPEGFK+P + N+    
Sbjct: 640 PVMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRS 699

[Close]

BLAST of Cmc08g0222261 vs. NCBI nr
Match: RVW50867.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 615.1 bits (1585), Expect = 4.7e-172
Identity = 309/497 (62.17%), Postives = 379/497 (76.26%), Query Frame = 0


Query: 1   MRAKLPLSIWGHAILHAVSLIRIRPTSYHKYSPTQLAYGQEPNISHLRIFGCAVYVPISP 60
           M+ KLP S WGHAI+HA +L+RIRPT+YH+YSP+QL  G++PNISHLRIFGCAVYVPI+P
Sbjct: 220 MKTKLPTSAWGHAIMHAAALVRIRPTTYHEYSPSQLVLGKQPNISHLRIFGCAVYVPIAP 279

Query: 61  PQRTKMGPQRRLGIYVGFKSPSIIRYLEPLTGDVFTARFADCHFNETNFPTLG--GGIKK 120
            QRTKMGPQRRLG+YVGF SPSIIRYLEPLTGDVFTARFADCHFNE+ FP+LG    I +
Sbjct: 280 TQRTKMGPQRRLGVYVGFDSPSIIRYLEPLTGDVFTARFADCHFNESVFPSLGREKSIPE 339

Query: 121 LENEIAWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAANAP 180
              EI+W  S ++HLDPRT QCELEVQ+IIHLQ++ANQ+PDAF DTKKVTKS+IPAAN P
Sbjct: 340 ERREISWKTSTMTHLDPRTNQCELEVQRIIHLQNLANQLPDAFIDTKKVTKSHIPAANTP 399

Query: 181 SIIEIPTQQVDTINESTLRRKRGRPMGSKDKNPRKRKVTNSRNDL--------------- 240
           + I++P  Q+   NES +R KRGRP+GSKD  PRKR+     + L               
Sbjct: 400 ARIDVPVGQL--TNESKIRLKRGRPVGSKDVTPRKRRTQEKLSTLEEAIKMTDQFKIDKS 459

Query: 241 --IENRNIQEKI-----------------MDTTSGKNV-----EETQVYEDHNEISINYT 300
             +E   I +K                   +T+   ++     EE QV E + EIS++Y 
Sbjct: 460 IALEEAQIMQKAPEEVHIEQEVPEEAHIEQETSEDPHIEREAPEEAQVPE-NCEISVSYV 519

Query: 301 MTGKRWNRINVVVDNIFAYNVVHNIIHENEDYEPKSIDKCRNRKDWPKWKEVIQPELNSL 360
            TG++W+R N+V++NIFA+ V  +II  +ED EP+++++CR+R DWPKWKE IQ ELNSL
Sbjct: 520 QTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSL 579

Query: 361 TKREVFGPVVYTPKGVKPVGFKWIFVRKRNENNEVTRYKARLVAQGFSQRPDIDFEETYS 420
           TKREVFGPVV TP+ VKPVG+KW+FVRKRNENNE+ RYKARLVAQGFSQRP ID+EETYS
Sbjct: 580 TKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYS 639

Query: 421 PVVNAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPEGFKIPKSYNSNSIE 457
           PV++AIT R+LISLAV E LDM LMDV+TAYLYGS++N+IYMKIPEGFK+P + N+    
Sbjct: 640 PVMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRS 699

[Close]

BLAST of Cmc08g0222261 vs. NCBI nr
Match: AQY61300.1 (Pol [Coffea eugenioides])

HSP 1 Score: 614.8 bits (1584), Expect = 6.1e-172
Identity = 295/456 (64.69%), Postives = 364/456 (79.82%), Query Frame = 0


Query: 1   MRAKLPLSIWGHAILHAVSLIRIRPTSYHKYSPTQLAYGQEPNISHLRIFGCAVYVPISP 60
           MR+KLP S WGHAILHA +L+RIRPT+YH YSP QL +G EPNISHLRIFGCAVYVPI+P
Sbjct: 340 MRSKLPSSAWGHAILHAATLVRIRPTNYHTYSPLQLTFGYEPNISHLRIFGCAVYVPIAP 399

Query: 61  PQRTKMGPQRRLGIYVGFKSPSIIRYLEPLTGDVFTARFADCHFNETNFPTLGGGIKKLE 120
           PQR K+ PQRRLGIYVG++SPSII+Y+EPLTGD+FTARFADCHF+E++FPTLGG   + +
Sbjct: 400 PQRRKLSPQRRLGIYVGYESPSIIKYMEPLTGDLFTARFADCHFDESHFPTLGGDKNQPK 459

Query: 121 NEIAWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAANAPSI 180
            EI W +S L+ LD RTK+CELEVQ+IIHLQ +ANQ+PDAF D+K+VTKS+IPA NAP  
Sbjct: 460 KEITWKIS-LNFLDSRTKECELEVQRIIHLQKIANQLPDAFNDSKRVTKSHIPAENAPIK 519

Query: 181 IEIPTQQVDTINESTLRRKRGRPMGSKDKNPRKRKVTNSRNDLIENRNIQEKIMDTTSGK 240
           I++P  Q+ + NES  R KRGRP+GSKDKNPRK++        ++   I +KI       
Sbjct: 520 IDVPEGQITSANESKARLKRGRPLGSKDKNPRKKRG-------VDESTISDKIQPPEEVA 579

Query: 241 NVEETQVYEDHNEISINYTMTGKRWNRINVVVDNIFAYNVVHNIIHENEDYEPKSIDKCR 300
             E      +  E SIN+  + K WNR  +++DNIFAYN+  +I+ E+ED+EP+S+D+CR
Sbjct: 580 PKEPILEENEIMENSINFVTSKKSWNRKEIIIDNIFAYNIALDIMAEDEDHEPRSVDECR 639

Query: 301 NRKDWPKWKEVIQPELNSLTKREVFGPVVYTPKGVKPVGFKWIFVRKRNENNEVTRYKAR 360
            R DWPKWK+ IQ EL+SL KR+VFGPVV TP+GVKPVG+KW+FVRKRNE NE+ RYKAR
Sbjct: 640 GRNDWPKWKDAIQSELDSLAKRKVFGPVVQTPEGVKPVGYKWVFVRKRNEKNEIVRYKAR 699

Query: 361 LVAQGFSQRPDIDFEETYSPVVNAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIY 420
           LVAQGFSQRP  D++ETYSPVV+AIT RYL+S AV E LDM LMDVVTAYLYG+LEN+IY
Sbjct: 700 LVAQGFSQRPGFDYDETYSPVVDAITFRYLVSFAVHEKLDMRLMDVVTAYLYGNLENDIY 759

Query: 421 MKIPEGFKIPKSYNSNSIELCSIKLQRSLYGLKQSG 457
           ++IPEGF +P++  SN   + SIKLQRSLYGLKQSG
Sbjct: 760 IRIPEGFNMPEACKSNPKNIYSIKLQRSLYGLKQSG 787

[Close]

BLAST of Cmc08g0222261 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 145.6 bits (366), Expect = 1.4e-33
Identity = 139/480 (28.96%), Postives = 229/480 (47.71%), Query Frame = 0


Query: 3    AKLPLSIWGHAILHAVSLIRIRPTSY---HKYSPTQLAYGQEPNISHLRIFGCAVYVPIS 62
            AKL  S WG A+L A  LI   P+        +P ++ + ++P + HLR+FG  VYV I 
Sbjct: 603  AKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIK 662

Query: 63   PPQRTKMGPQRRLGIYVGFKSPSIIRYLEPLTGDVFTARFADCHFNETN--------FPT 122
              Q  K   +    I+VG++ P+  +  + +      AR  D   +ETN        F T
Sbjct: 663  NKQ-GKFDDKSFKSIFVGYE-PNGFKLWDAVNEKFIVAR--DVVVDETNMVNSRAVKFET 722

Query: 123  LG-GGIKKLENEIAWNVS---LLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKV 182
            +     K+ EN+   N S   + +     +K+C+  +Q +    S  ++  +   D++K+
Sbjct: 723  VFLKDSKESENKNFPNDSRKIIQTEFPNESKECD-NIQFL--KDSKESENKNFPNDSRKI 782

Query: 183  TKSYIP-----AANAPSIIEIPTQQVDTINESTLRRKRGRPMGSKDK-NPRKRKVTNSRN 242
             ++  P       N   + +        +NES  R++      SK   NP + + + +  
Sbjct: 783  IQTEFPNESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAE 842

Query: 243  DLIE------NRNIQEKIMDTTSGKNVEETQVYEDHNEISINYTMTGKRWNRINVVVDNI 302
             L E       +N   +I++  S +   + Q+   +NE            N +N VV N 
Sbjct: 843  HLKEIGIDNPTKNDGIEIINRRSERLKTKPQI--SYNEED----------NSLNKVVLN- 902

Query: 303  FAYNVVHNIIHENEDYEPKSIDKCRNRKDWPKWKEVIQPELNSLTKREVFGPVVYTPKGV 362
                  H I ++     P S D+ + R D   W+E I  ELN+      +  +   P+  
Sbjct: 903  -----AHTIFND----VPNSFDEIQYRDDKSSWEEAINTELNAHKINNTW-TITKRPENK 962

Query: 363  KPVGFKWIFVRKRNENNEVTRYKARLVAQGFSQRPDIDFEETYSPVVNAITLRYLISLAV 422
              V  +W+F  K NE     RYKARLVA+GF+Q+  ID+EET++PV    + R+++SL +
Sbjct: 963  NIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVI 1022

Query: 423  CENLDMHLMDVVTAYLYGSLENEIYMKIPEGFKIPKSYNSNSIELCSIKLQRSLYGLKQS 456
              NL +H MDV TA+L G+L+ EIYM++P+G       + NS  +C  KL +++YGLKQ+
Sbjct: 1023 QYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI------SCNSDNVC--KLNKAIYGLKQA 1044

[Close]

BLAST of Cmc08g0222261 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.4e-33
Identity = 119/455 (26.15%), Postives = 204/455 (44.84%), Query Frame = 0


Query: 3   AKLPLSIWGHAILHAVSLIRIRPTSYHKYS-PTQLAYGQEPNISHLRIFGCAVYVPISPP 62
           AKLP S WG A+  A  LI   P+    +  P ++   +E + SHL++FGC  +  +   
Sbjct: 603 AKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKE 662

Query: 63  QRTKMGPQRRLGIYVGFKSPSI-IRYLEPLTGDVFTARFADCHFNETNFPTLGGGIKKLE 122
           QRTK+  +    I++G+       R  +P+   V  +R  D  F E+   T     +K++
Sbjct: 663 QRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSR--DVVFRESEVRTAADMSEKVK 722

Query: 123 NEIAWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAANAPSI 182
           N I                    +   + + S +N    A + T +V++           
Sbjct: 723 NGI--------------------IPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQ 782

Query: 183 IEIPTQQVDTINESTLRRKRGRPMGSKDKNPRKRKVTNSRNDLIENRNIQEKIMDTTSGK 242
            E   + V+ +   T   ++ +P+  + + PR           +E+R             
Sbjct: 783 GEQLDEGVEEVEHPTQGEEQHQPL-RRSERPR-----------VESRRYP---------- 842

Query: 243 NVEETQVYEDHNEISINYTMTGKRWNRINVVVDNIFAYNVVHNIIHENEDYEPKSIDKCR 302
                         S  Y +                           ++D EP+S+ +  
Sbjct: 843 --------------STEYVLI--------------------------SDDREPESLKEVL 902

Query: 303 NRKDWPKWKEVIQPELNSLTKREVFGPVVYTPKGVKPVGFKWIFVRKRNENNEVTRYKAR 362
           +  +  +  + +Q E+ SL K   +  +V  PKG +P+  KW+F  K++ + ++ RYKAR
Sbjct: 903 SHPEKNQLMKAMQEEMESLQKNGTY-KLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKAR 962

Query: 363 LVAQGFSQRPDIDFEETYSPVVNAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIY 422
           LV +GF Q+  IDF+E +SPVV   ++R ++SLA   +L++  +DV TA+L+G LE EIY
Sbjct: 963 LVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIY 966

Query: 423 MKIPEGFKIPKSYNSNSIELCSIKLQRSLYGLKQS 456
           M+ PEGF++    +     +C  KL +SLYGLKQ+
Sbjct: 1023 MEQPEGFEVAGKKHM----VC--KLNKSLYGLKQA 966

[Close]

BLAST of Cmc08g0222261 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.6e-29
Identity = 125/487 (25.67%), Postives = 217/487 (44.56%), Query Frame = 0


Query: 3    AKLPLSIWGHAILHAVSLIRIRPTSYHKY-SPTQLAYGQEPNISHLRIFGCAVYVPISPP 62
            A +P + W +A   AV LI   PT   +  SP Q  +G  PN   LR+FGCA Y  + P 
Sbjct: 643  ASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPY 702

Query: 63   QRTKMGPQRRLGIYVGFK-SPSIIRYLEPLTGDVFTA---RFADCHFNETNFPTLGGGIK 122
             + K+  + R  +++G+  + S    L   T  ++ +   RF +  F  +N+      ++
Sbjct: 703  NQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQ 762

Query: 123  KLENEIAWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYI----- 182
            +   E +   S  + L  RT           H  +     P A     +V+ S +     
Sbjct: 763  EQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPPSSPSAPFRNSQVSSSNLDSSFS 822

Query: 183  -----------PAANAPSIIEIPTQQVDTINESTLRRKRGRPMGSKDKNPRKRKVTNSRN 242
                       P  N P     PT Q  T   S+    +  P      N    ++  S +
Sbjct: 823  SSFPSSPEPTAPRQNGPQPTTQPT-QTQTQTHSSQNTSQNNP-----TNESPSQLAQSLS 882

Query: 243  DLIENRNIQEKIMDTTSGKNVEET-------------QVYEDHNEISINYTMTGKRWNRI 302
               ++ +       + S  +   T             Q+  ++N+  +N    G R  + 
Sbjct: 883  TPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTR-AKA 942

Query: 303  NVVVDNIFAYNVVHNIIHENEDYEPKSIDKCRNRKDWPKWKEVIQPELNSLTKREVFGPV 362
             ++  N   Y++  ++  E+   EP++    +  KD  +W+  +  E+N+      +  V
Sbjct: 943  GIIKPNP-KYSLAVSLAAES---EPRT--AIQALKD-ERWRNAMGSEINAQIGNHTWDLV 1002

Query: 363  VYTPKGVKPVGFKWIFVRKRNENNEVTRYKARLVAQGFSQRPDIDFEETYSPVVNAITLR 422
               P  V  VG +WIF +K N +  + RYKARLVA+G++QRP +D+ ET+SPV+ + ++R
Sbjct: 1003 PPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIR 1062

Query: 423  YLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPEGFKIPKSYNSNSIELCSIKLQRS 456
             ++ +AV  +  +  +DV  A+L G+L +++YM  P GF I K    N +     KL+++
Sbjct: 1063 IVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGF-IDKD-RPNYV----CKLRKA 1109

[Close]

BLAST of Cmc08g0222261 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.9e-28
Identity = 122/483 (25.26%), Postives = 213/483 (44.10%), Query Frame = 0


Query: 3    AKLPLSIWGHAILHAVSLIRIRPTS-YHKYSPTQLAYGQEPNISHLRIFGCAVYVPISPP 62
            A +P + W +A   AV LI   PT      SP Q  +GQ PN   L++FGCA Y  + P 
Sbjct: 622  ASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPY 681

Query: 63   QRTKMGPQRRLGIYVGFK-SPSIIRYLEPLTGDVFTARFAD----CH-FNETNFPTLGGG 122
             R K+  + +   ++G+  + S    L   TG ++T+R       C  F+ TNF      
Sbjct: 682  NRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQ 741

Query: 123  IKKLENEIAW---------------NVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDA 182
             ++ ++   W                  L  HLD   +        +   Q  ++ +P +
Sbjct: 742  EQRSDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRP-PSSPSPLCTTQVSSSNLPSS 801

Query: 183  FTDTKKVTKSYIPAANAPSIIEIPTQQVDTINESTLRRKRG----RPMGSKDKNPRKRKV 242
               +   ++   P+ N P     P Q  ++ + S +          P      +P  +  
Sbjct: 802  SISSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSP 861

Query: 243  TNSRNDLIENRNIQEKIMDTTSGKNVEE-TQVYEDHNEISINYTMTGKRWNRINVVVDNI 302
             +S +    + +I E    ++S  +      V      I +N        +      D I
Sbjct: 862  ISSPHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGI 921

Query: 303  FAYNVVHNIIHE-NEDYEPKSIDKCRNRKDWPKWKEVIQPELNSLTKREVFGPVVYTPKG 362
               N  ++       + EP++    +  KD  +W++ +  E+N+      +  V   P  
Sbjct: 922  RKPNQKYSYATSLAANSEPRT--AIQAMKD-DRWRQAMGSEINAQIGNHTWDLVPPPPPS 981

Query: 363  VKPVGFKWIFVRKRNENNEVTRYKARLVAQGFSQRPDIDFEETYSPVVNAITLRYLISLA 422
            V  VG +WIF +K N +  + RYKARLVA+G++QRP +D+ ET+SPV+ + ++R ++ +A
Sbjct: 982  VTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVA 1041

Query: 423  VCENLDMHLMDVVTAYLYGSLENEIYMKIPEGF--KIPKSYNSNSIELCSIKLQRSLYGL 456
            V  +  +  +DV  A+L G+L +E+YM  P GF  K    Y      +C  +L++++YGL
Sbjct: 1042 VDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDY------VC--RLRKAIYGL 1092

[Close]

BLAST of Cmc08g0222261 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-10
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 292 EPKSIDKCRNRKDWPKWKEVIQPELNSLTKREVFGPVVYTPKGVKPVGFKWIFVRKRNEN 351
           EPKS+      KD P W + +Q EL++L++ + +  +V  P     +G KW+F  K + +
Sbjct: 27  EPKSV--IFALKD-PGWCQAMQEELDALSRNKTW-ILVPPPVNQNILGCKWVFKTKLHSD 86

Query: 352 NEVTRYKARLVAQGFSQRPDIDFEETYSPVVNAITLRYLISLA 395
             + R KARLVA+GF Q   I F ETYSPVV   T+R ++++A
Sbjct: 87  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc08g0222261 vs. ExPASy TrEMBL
Match: Q949J4 (Putative copia-like polyprotein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 626.3 bits (1614), Expect = 9.9e-176
Identity = 307/457 (67.18%), Postives = 369/457 (80.74%), Query Frame = 0


Query: 1   MRAKLPLSIWGHAILHAVSLIRIRPTSYHKYSPTQLAYGQEPNISHLRIFGCAVYVPISP 60
           MR KL +S+WGHAILHA +L+RIRPT+YH++SP QL +GQEPNISHLR+FGCAVYVPI+P
Sbjct: 79  MRTKLSVSMWGHAILHAATLVRIRPTNYHEFSPLQLTFGQEPNISHLRVFGCAVYVPIAP 138

Query: 61  PQRTKMGPQRRLGIYVGFKSPSIIRYLEPLTGDVFTARFADCHFNETNFPTLGGGIKKLE 120
           PQRTKMGPQRRLGIYVG++SPSII+YLEP+TGD+F  RFADCHF+E+ +PTLGG  K L 
Sbjct: 139 PQRTKMGPQRRLGIYVGYESPSIIKYLEPMTGDLFKVRFADCHFDESVYPTLGGEHKSLG 198

Query: 121 NEIAWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAANAPSI 180
            EI WN S LSHLDPRT QCE EVQ+II+LQ++ANQ+PDAFT+  ++TKSYIPA NAP  
Sbjct: 199 KEIDWNSSSLSHLDPRTNQCEQEVQRIIYLQNIANQLPDAFTNLPRITKSYIPAVNAPVR 258

Query: 181 IEIPTQQVDTINESTLRRKRGRPMGSKDKNPRKRKVTNSRNDLIENRNIQEKIMDTTSGK 240
           ++IPT Q+   NES    KRGRP+GSKDKNPRKRK  N ++D      ++E   D T   
Sbjct: 259 VDIPTGQIVKANESRPHLKRGRPIGSKDKNPRKRKGINDQDD----HGLKEISQDETQVI 318

Query: 241 NVEETQV-YEDHNEISINYTMTGKRWNRINVVVDNIFAYNVVHNIIHENEDYEPKSIDKC 300
             +E +V    +NEIS+NY  T K WNR NVV+DNIFAYNV   I+ ++ED EPKS+ +C
Sbjct: 319 THDEEEVRTSQNNEISMNYVSTRKFWNRNNVVIDNIFAYNVAIEIMQQDEDSEPKSVHEC 378

Query: 301 RNRKDWPKWKEVIQPELNSLTKREVFGPVVYTPKGVKPVGFKWIFVRKRNENNEVTRYKA 360
           R R DWPKWK+ IQ EL SL KRE FGP++ TP+G+KPVG+KWIFVRKRNE  EV RYKA
Sbjct: 379 RQRNDWPKWKDAIQAELASLEKRESFGPIIRTPEGIKPVGYKWIFVRKRNEKGEVMRYKA 438

Query: 361 RLVAQGFSQRPDIDFEETYSPVVNAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEI 420
           RLVAQGFSQRP ID+ ETYSPVV+AIT RYLI+LAV E L+M LMDVVTAYLYGSL++ I
Sbjct: 439 RLVAQGFSQRPGIDYMETYSPVVDAITFRYLINLAVYEKLEMRLMDVVTAYLYGSLDHNI 498

Query: 421 YMKIPEGFKIPKSYNSNSIELCSIKLQRSLYGLKQSG 457
           +MKIPE FK+P++Y  +S E CSIKLQ+SLYGLKQSG
Sbjct: 499 FMKIPEAFKVPETY-KDSRETCSIKLQKSLYGLKQSG 530

[Close]

BLAST of Cmc08g0222261 vs. ExPASy TrEMBL
Match: A0A438K4P3 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_114 PE=4 SV=1)

HSP 1 Score: 615.1 bits (1585), Expect = 2.3e-172
Identity = 309/497 (62.17%), Postives = 379/497 (76.26%), Query Frame = 0


Query: 1   MRAKLPLSIWGHAILHAVSLIRIRPTSYHKYSPTQLAYGQEPNISHLRIFGCAVYVPISP 60
           M+ KLP S WGHAI+HA +L+RIRPT+YH+YSP+QL  G++PNISHLRIFGCAVYVPI+P
Sbjct: 220 MKTKLPTSAWGHAIMHAAALVRIRPTTYHEYSPSQLVLGKQPNISHLRIFGCAVYVPIAP 279

Query: 61  PQRTKMGPQRRLGIYVGFKSPSIIRYLEPLTGDVFTARFADCHFNETNFPTLG--GGIKK 120
            QRTKMGPQRRLG+YVGF SPSIIRYLEPLTGDVFTARFADCHFNE+ FP+LG    I +
Sbjct: 280 TQRTKMGPQRRLGVYVGFDSPSIIRYLEPLTGDVFTARFADCHFNESVFPSLGREKSIPE 339

Query: 121 LENEIAWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAANAP 180
              EI+W  S ++HLDPRT QCELEVQ+IIHLQ++ANQ+PDAF DTKKVTKS+IPAAN P
Sbjct: 340 ERREISWKTSTMTHLDPRTNQCELEVQRIIHLQNLANQLPDAFIDTKKVTKSHIPAANTP 399

Query: 181 SIIEIPTQQVDTINESTLRRKRGRPMGSKDKNPRKRKVTNSRNDL--------------- 240
           + I++P  Q+   NES +R KRGRP+GSKD  PRKR+     + L               
Sbjct: 400 ARIDVPVGQL--TNESKIRLKRGRPVGSKDVTPRKRRTQEKLSTLEEAIKMTDQFKIDKS 459

Query: 241 --IENRNIQEKI-----------------MDTTSGKNV-----EETQVYEDHNEISINYT 300
             +E   I +K                   +T+   ++     EE QV E + EIS++Y 
Sbjct: 460 IALEEAQIMQKAPEEVHIEQEVPEEAHIEQETSEDPHIEREAPEEAQVPE-NCEISVSYV 519

Query: 301 MTGKRWNRINVVVDNIFAYNVVHNIIHENEDYEPKSIDKCRNRKDWPKWKEVIQPELNSL 360
            TG++W+R N+V++NIFA+ V  +II  +ED EP+++++CR+R DWPKWKE IQ ELNSL
Sbjct: 520 QTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSL 579

Query: 361 TKREVFGPVVYTPKGVKPVGFKWIFVRKRNENNEVTRYKARLVAQGFSQRPDIDFEETYS 420
           TKREVFGPVV TP+ VKPVG+KW+FVRKRNENNE+ RYKARLVAQGFSQRP ID+EETYS
Sbjct: 580 TKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYS 639

Query: 421 PVVNAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPEGFKIPKSYNSNSIE 457
           PV++AIT R+LISLAV E LDM LMDV+TAYLYGS++N+IYMKIPEGFK+P + N+    
Sbjct: 640 PVMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRS 699

[Close]

BLAST of Cmc08g0222261 vs. ExPASy TrEMBL
Match: A0A438ET65 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_127 PE=4 SV=1)

HSP 1 Score: 615.1 bits (1585), Expect = 2.3e-172
Identity = 309/497 (62.17%), Postives = 379/497 (76.26%), Query Frame = 0


Query: 1   MRAKLPLSIWGHAILHAVSLIRIRPTSYHKYSPTQLAYGQEPNISHLRIFGCAVYVPISP 60
           M+ KLP S WGHAI+HA +L+RIRPT+YH+YSP+QL  G++PNISHLRIFGCAVYVPI+P
Sbjct: 220 MKTKLPTSAWGHAIMHAAALVRIRPTTYHEYSPSQLVLGKQPNISHLRIFGCAVYVPIAP 279

Query: 61  PQRTKMGPQRRLGIYVGFKSPSIIRYLEPLTGDVFTARFADCHFNETNFPTLG--GGIKK 120
            QRTKMGPQRRLG+YVGF SPSIIRYLEPLTGDVFTARFADCHFNE+ FP+LG    I +
Sbjct: 280 TQRTKMGPQRRLGVYVGFDSPSIIRYLEPLTGDVFTARFADCHFNESVFPSLGREKSIPE 339

Query: 121 LENEIAWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAANAP 180
              EI+W  S ++HLDPRT QCELEVQ+IIHLQ++ANQ+PDAF DTKKVTKS+IPAAN P
Sbjct: 340 ERREISWKTSTMTHLDPRTNQCELEVQRIIHLQNLANQLPDAFIDTKKVTKSHIPAANTP 399

Query: 181 SIIEIPTQQVDTINESTLRRKRGRPMGSKDKNPRKRKVTNSRNDL--------------- 240
           + I++P  Q+   NES +R KRGRP+GSKD  PRKR+     + L               
Sbjct: 400 ARIDVPVGQL--TNESKIRLKRGRPVGSKDVTPRKRRTQEKLSTLEEAIKMTDQFKIDKS 459

Query: 241 --IENRNIQEKI-----------------MDTTSGKNV-----EETQVYEDHNEISINYT 300
             +E   I +K                   +T+   ++     EE QV E + EIS++Y 
Sbjct: 460 IALEEAQIMQKAPEEVHIEQEVPEEAHIEQETSEDPHIEREAPEEAQVPE-NCEISVSYV 519

Query: 301 MTGKRWNRINVVVDNIFAYNVVHNIIHENEDYEPKSIDKCRNRKDWPKWKEVIQPELNSL 360
            TG++W+R N+V++NIFA+ V  +II  +ED EP+++++CR+R DWPKWKE IQ ELNSL
Sbjct: 520 QTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSL 579

Query: 361 TKREVFGPVVYTPKGVKPVGFKWIFVRKRNENNEVTRYKARLVAQGFSQRPDIDFEETYS 420
           TKREVFGPVV TP+ VKPVG+KW+FVRKRNENNE+ RYKARLVAQGFSQRP ID+EETYS
Sbjct: 580 TKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYS 639

Query: 421 PVVNAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPEGFKIPKSYNSNSIE 457
           PV++AIT R+LISLAV E LDM LMDV+TAYLYGS++N+IYMKIPEGFK+P + N+    
Sbjct: 640 PVMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRS 699

[Close]

BLAST of Cmc08g0222261 vs. ExPASy TrEMBL
Match: A0A438CTC8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1564 PE=4 SV=1)

HSP 1 Score: 615.1 bits (1585), Expect = 2.3e-172
Identity = 307/487 (63.04%), Postives = 376/487 (77.21%), Query Frame = 0


Query: 1   MRAKLPLSIWGHAILHAVSLIRIRPTSYHKYSPTQLAYGQEPNISHLRIFGCAVYVPISP 60
           M+ KLP S WGHAI+HA +L+RIRPT+YH+YSP+QL  G++PNISHLRIFGCAVYVPI+P
Sbjct: 37  MKTKLPTSAWGHAIMHAAALVRIRPTTYHEYSPSQLVLGKQPNISHLRIFGCAVYVPIAP 96

Query: 61  PQRTKMGPQRRLGIYVGFKSPSIIRYLEPLTGDVFTARFADCHFNETNFPTLG--GGIKK 120
            QRTKMGPQRRLG+YVGF SPSII+YLEPLTGDVFTARFADCHFNE+ FP+LG    I +
Sbjct: 97  TQRTKMGPQRRLGVYVGFDSPSIIKYLEPLTGDVFTARFADCHFNESVFPSLGREKSIPE 156

Query: 121 LENEIAWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAANAP 180
              EI+W  S ++HLDPRT QCELEVQ+IIHLQ++ NQ+PDAF DTKKVTKS+IPAAN P
Sbjct: 157 ERREISWKTSTMTHLDPRTNQCELEVQRIIHLQNLVNQLPDAFIDTKKVTKSHIPAANTP 216

Query: 181 SIIEIPTQQVDTINESTLRRKRGRPMGSKDKNPRKRKVTNSRNDL--------------- 240
           + I++P  Q+   NES +R KRGRP+GSKD  PRKR+       L               
Sbjct: 217 ARIDVPVGQL--TNESKIRLKRGRPVGSKDVTPRKRRTQEKLGTLEETIKMTDQFKIDKS 276

Query: 241 --IENRNIQEKI-------MDTTSGKNV-----EETQVYEDHNEISINYTMTGKRWNRIN 300
             +E   I +K         +T    ++     EE QV E + EIS++Y  TG++W+R N
Sbjct: 277 IALEEAQIMQKAPEEVHIEQETPEDPHIEREAPEEAQVPE-NCEISVSYVQTGEKWDRNN 336

Query: 301 VVVDNIFAYNVVHNIIHENEDYEPKSIDKCRNRKDWPKWKEVIQPELNSLTKREVFGPVV 360
           +V++NIFA+ V  +II  +ED EP+++++CR+R DWPKWKE IQ ELNSLTKREVFGPVV
Sbjct: 337 IVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLTKREVFGPVV 396

Query: 361 YTPKGVKPVGFKWIFVRKRNENNEVTRYKARLVAQGFSQRPDIDFEETYSPVVNAITLRY 420
            TP+ VKPVG+KW+FVRKRNENNE+ RYKARLVAQGFSQRP ID+EETYSPV++AIT R+
Sbjct: 397 QTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDAITFRF 456

Query: 421 LISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPEGFKIPKSYNSNSIELCSIKLQRSL 457
           LISLAV E LDM LMDV+TAYLYGS++N+IYMKIPEGFK+P + N+    + SIKLQRSL
Sbjct: 457 LISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSMYSIKLQRSL 516

[Close]

BLAST of Cmc08g0222261 vs. ExPASy TrEMBL
Match: A0A1U9WYB0 (Pol OS=Coffea eugenioides OX=49369 GN=Pol PE=4 SV=1)

HSP 1 Score: 614.8 bits (1584), Expect = 3.0e-172
Identity = 295/456 (64.69%), Postives = 364/456 (79.82%), Query Frame = 0


Query: 1   MRAKLPLSIWGHAILHAVSLIRIRPTSYHKYSPTQLAYGQEPNISHLRIFGCAVYVPISP 60
           MR+KLP S WGHAILHA +L+RIRPT+YH YSP QL +G EPNISHLRIFGCAVYVPI+P
Sbjct: 340 MRSKLPSSAWGHAILHAATLVRIRPTNYHTYSPLQLTFGYEPNISHLRIFGCAVYVPIAP 399

Query: 61  PQRTKMGPQRRLGIYVGFKSPSIIRYLEPLTGDVFTARFADCHFNETNFPTLGGGIKKLE 120
           PQR K+ PQRRLGIYVG++SPSII+Y+EPLTGD+FTARFADCHF+E++FPTLGG   + +
Sbjct: 400 PQRRKLSPQRRLGIYVGYESPSIIKYMEPLTGDLFTARFADCHFDESHFPTLGGDKNQPK 459

Query: 121 NEIAWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAANAPSI 180
            EI W +S L+ LD RTK+CELEVQ+IIHLQ +ANQ+PDAF D+K+VTKS+IPA NAP  
Sbjct: 460 KEITWKIS-LNFLDSRTKECELEVQRIIHLQKIANQLPDAFNDSKRVTKSHIPAENAPIK 519

Query: 181 IEIPTQQVDTINESTLRRKRGRPMGSKDKNPRKRKVTNSRNDLIENRNIQEKIMDTTSGK 240
           I++P  Q+ + NES  R KRGRP+GSKDKNPRK++        ++   I +KI       
Sbjct: 520 IDVPEGQITSANESKARLKRGRPLGSKDKNPRKKRG-------VDESTISDKIQPPEEVA 579

Query: 241 NVEETQVYEDHNEISINYTMTGKRWNRINVVVDNIFAYNVVHNIIHENEDYEPKSIDKCR 300
             E      +  E SIN+  + K WNR  +++DNIFAYN+  +I+ E+ED+EP+S+D+CR
Sbjct: 580 PKEPILEENEIMENSINFVTSKKSWNRKEIIIDNIFAYNIALDIMAEDEDHEPRSVDECR 639

Query: 301 NRKDWPKWKEVIQPELNSLTKREVFGPVVYTPKGVKPVGFKWIFVRKRNENNEVTRYKAR 360
            R DWPKWK+ IQ EL+SL KR+VFGPVV TP+GVKPVG+KW+FVRKRNE NE+ RYKAR
Sbjct: 640 GRNDWPKWKDAIQSELDSLAKRKVFGPVVQTPEGVKPVGYKWVFVRKRNEKNEIVRYKAR 699

Query: 361 LVAQGFSQRPDIDFEETYSPVVNAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIY 420
           LVAQGFSQRP  D++ETYSPVV+AIT RYL+S AV E LDM LMDVVTAYLYG+LEN+IY
Sbjct: 700 LVAQGFSQRPGFDYDETYSPVVDAITFRYLVSFAVHEKLDMRLMDVVTAYLYGNLENDIY 759

Query: 421 MKIPEGFKIPKSYNSNSIELCSIKLQRSLYGLKQSG 457
           ++IPEGF +P++  SN   + SIKLQRSLYGLKQSG
Sbjct: 760 IRIPEGFNMPEACKSNPKNIYSIKLQRSLYGLKQSG 787

[Close]

BLAST of Cmc08g0222261 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 106.3 bits (264), Expect = 6.6e-23
Identity = 51/153 (33.33%), Postives = 91/153 (59.48%), Query Frame = 0


Query: 303 KDWPKWKEVIQPELNSLTKREVFGPVVYTPKGVKPVGFKWIFVRKRNENNEVTRYKARLV 362
           K++  W   +  E+ ++     +  +   P   KP+G KW++  K N +  + RYKARLV
Sbjct: 93  KEFLVWCGAMDDEIGAMETTHTW-EICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLV 152

Query: 363 AQGFSQRPDIDFEETYSPVVNAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMK 422
           A+G++Q+  IDF ET+SPV    +++ +++++   N  +H +D+  A+L G L+ EIYMK
Sbjct: 153 AKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMK 212

Query: 423 IPEGFKIPKSYNSNSIELCSIKLQRSLYGLKQS 456
           +P G+   +  +     +C +K  +S+YGLKQ+
Sbjct: 213 LPPGYAARQGDSLPPNAVCYLK--KSIYGLKQA 242

[Close]

BLAST of Cmc08g0222261 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-11
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 292 EPKSIDKCRNRKDWPKWKEVIQPELNSLTKREVFGPVVYTPKGVKPVGFKWIFVRKRNEN 351
           EPKS+      KD P W + +Q EL++L++ + +  +V  P     +G KW+F  K + +
Sbjct: 27  EPKSV--IFALKD-PGWCQAMQEELDALSRNKTW-ILVPPPVNQNILGCKWVFKTKLHSD 86

Query: 352 NEVTRYKARLVAQGFSQRPDIDFEETYSPVVNAITLRYLISLA 395
             + R KARLVA+GF Q   I F ETYSPVV   T+R ++++A
Sbjct: 87  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc08g0222261 vs. NCBI nr


Match Name	E-value	Identity	Description
AAK84483.1	2.0e-175	67.18	putative copia-like polyprotein [Solanum lycopersicum]	[more]
RVW26456.1	4.7e-172	63.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVX16158.1	4.7e-172	62.17	Copia protein [Vitis vinifera]	[more]
RVW50867.1	4.7e-172	62.17	Copia protein [Vitis vinifera]	[more]
AQY61300.1	6.1e-172	64.69	Pol [Coffea eugenioides]	[more]

BLAST of Cmc08g0222261 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	1.4e-33	28.96	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	2.4e-33	26.15	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	4.6e-29	25.67	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.9e-28	25.26	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92520	2.1e-10	39.81	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0222261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q949J4	9.9e-176	67.18	Putative copia-like polyprotein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]
A0A438K4P3	2.3e-172	62.17	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_114 PE=4 SV=1	[more]
A0A438ET65	2.3e-172	62.17	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_127 PE=4 SV=1	[more]
A0A438CTC8	2.3e-172	63.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A1U9WYB0	3.0e-172	64.69	Pol OS=Coffea eugenioides OX=49369 GN=Pol PE=4 SV=1	[more]

BLAST of Cmc08g0222261 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.6e-23	33.33	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.5e-11	39.81	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 328..456 e-value: 4.2E-35 score: 121.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..220
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 5..455

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0222261.1	Cmc08g0222261.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding