Cmc08g0222221 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0222221
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 10725903 .. 10726655 (-)
RNA-Seq Expression	Cmc08g0222221
Synteny	Cmc08g0222221

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCATGAGCAGAACTACCCTACCCACGAATTAGAGTTGGTAGCAGTGGTCTTTGCACTGAAGATATGGAGGCATTACCTATACAGTGAGAAGATACAGATTTTCACTGACCATAAGAGCCTGAAGTACTTCTTCATCCAGAAGGAGTTGAACATGAGACAGAGGAGATGGCTCGAGTTGGTGAAAGACTATGACTGCGAGATTCTATACCACCCAGGTAAGGCAAATGTAGTAGCTTACACGCTGAGTAGGAATGTTCCACATTCAGCAGAACTGATCACCAATCAAGCCCCCTTACTCAGAGATTTTGAGAGAGTCGAGATTGCAGTCTCAGTAGGAGAGGTTACTTCACAGTTGGTTCAGTTGTCAGTACAGCCAACCCTGAGACAGAGGATTATTGTCGTTCAGTTGAATGGTTCTTATTTGGTTGAGAAGCGTCGTTTGGTAGAGACAGGGCAAGGTGAGGACTTCTTCATATCCTCTGACGATGGCCTTACGTTTGAGGGACGCTTGTGTGTGTCGGAAGACAGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTCCATTTACCATGCACCCTGGAACTACGAAGATGTACCAGGACTTAAGGAGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGATTTTGTCAGTAAGTGTTTGGTGTGCCAGCAGGTGAAGGCACCTAGACAGCGGCCAGCCGGGTTGTTGCAACCCTTGAGTGTGCCAGGGTGA

mRNA sequence

ATGAGTCATGAGCAGAACTACCCTACCCACGAATTAGAGTTGGTAGCAGTGGTCTTTGCACTGAAGATATGGAGGCATTACCTATACAGTGAGAAGATACAGATTTTCACTGACCATAAGAGCCTGAAGTACTTCTTCATCCAGAAGGAGTTGAACATGAGACAGAGGAGATGGCTCGAGTTGGTGAAAGACTATGACTGCGAGATTCTATACCACCCAGGTAAGGCAAATGTAGTAGCTTACACGCTGAGTAGGAATGTTCCACATTCAGCAGAACTGATCACCAATCAAGCCCCCTTACTCAGAGATTTTGAGAGAGTCGAGATTGCAGTCTCAGTAGGAGAGGTTACTTCACAGTTGGTTCAGTTGTCAGTACAGCCAACCCTGAGACAGAGGATTATTGTCGTTCAGTTGAATGGTTCTTATTTGGTTGAGAAGCGTCGTTTGGTAGAGACAGGGCAAGGTGAGGACTTCTTCATATCCTCTGACGATGGCCTTACGTTTGAGGGACGCTTGTGTGTGTCGGAAGACAGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTCCATTTACCATGCACCCTGGAACTACGAAGATGTACCAGGACTTAAGGAGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGATTTTGTCAGTAAGTGTTTGGTGTGCCAGCAGGTGAAGGCACCTAGACAGCGGCCAGCCGGGTTGTTGCAACCCTTGAGTGTGCCAGGGTGA

Coding sequence (CDS)

ATGAGTCATGAGCAGAACTACCCTACCCACGAATTAGAGTTGGTAGCAGTGGTCTTTGCACTGAAGATATGGAGGCATTACCTATACAGTGAGAAGATACAGATTTTCACTGACCATAAGAGCCTGAAGTACTTCTTCATCCAGAAGGAGTTGAACATGAGACAGAGGAGATGGCTCGAGTTGGTGAAAGACTATGACTGCGAGATTCTATACCACCCAGGTAAGGCAAATGTAGTAGCTTACACGCTGAGTAGGAATGTTCCACATTCAGCAGAACTGATCACCAATCAAGCCCCCTTACTCAGAGATTTTGAGAGAGTCGAGATTGCAGTCTCAGTAGGAGAGGTTACTTCACAGTTGGTTCAGTTGTCAGTACAGCCAACCCTGAGACAGAGGATTATTGTCGTTCAGTTGAATGGTTCTTATTTGGTTGAGAAGCGTCGTTTGGTAGAGACAGGGCAAGGTGAGGACTTCTTCATATCCTCTGACGATGGCCTTACGTTTGAGGGACGCTTGTGTGTGTCGGAAGACAGTGCAGTCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTCCATTTACCATGCACCCTGGAACTACGAAGATGTACCAGGACTTAAGGAGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGATTTTGTCAGTAAGTGTTTGGTGTGCCAGCAGGTGAAGGCACCTAGACAGCGGCCAGCCGGGTTGTTGCAACCCTTGAGTGTGCCAGGGTGA

Protein sequence

MSHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLELVKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLVQLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVKTELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAGLLQPLSVPG

Homology

[Close]

BLAST of Cmc08g0222221 vs. NCBI nr
Match: KAA0050011.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 454.1 bits (1167), Expect = 7.6e-124
Identity = 225/249 (90.36%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 2   SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLEL 61
           SHEQNYPTH+LEL AVVFALKIWRHYLY EKIQI TDHKSLKYFF QKELNMRQRRWLEL
Sbjct: 613 SHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIITDHKSLKYFFTQKELNMRQRRWLEL 672

Query: 62  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 121
           VKDYDCE+LYHPGKANVVA  LSR V HSA LIT QAPLLRDFER EIAVSVGEVTSQL 
Sbjct: 673 VKDYDCEMLYHPGKANVVADALSRKVAHSAALITKQAPLLRDFERAEIAVSVGEVTSQLA 732

Query: 122 QLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVK 181
           QLSVQPTLRQRIIV QLN  YLVEKRRLVETGQGEDF ISSDDGLTFEGRLCV +DSA+K
Sbjct: 733 QLSVQPTLRQRIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGLTFEGRLCVPKDSAIK 792

Query: 182 TELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAG 241
           TELLTE HSSPFTMHPG+TKMYQDLRSVYWWRNMKREVADFVS+CLVCQQVKAPRQRPAG
Sbjct: 793 TELLTEIHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPAG 852

Query: 242 LLQPLSVPG 251
           LLQPLSVPG
Sbjct: 853 LLQPLSVPG 861

[Close]

BLAST of Cmc08g0222221 vs. NCBI nr
Match: KAA0041490.1 (hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 452.2 bits (1162), Expect = 2.9e-123
Identity = 226/249 (90.76%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 2   SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLEL 61
           SHEQNYPTH LEL AVVFALKIWRHYLY EKIQI+TDHKSLKYFF QKELNMR RRWLEL
Sbjct: 678 SHEQNYPTHYLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRHRRWLEL 737

Query: 62  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 121
           VKDYDCEILYHPGKANVVA  LSR V HSA LIT QAPLLRDFER EIAVSVGEVTSQL 
Sbjct: 738 VKDYDCEILYHPGKANVVADALSRKVAHSAALITKQAPLLRDFERAEIAVSVGEVTSQLA 797

Query: 122 QLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVK 181
           QLSVQPTLRQRIIV QLN  YLVEKRRLVETGQGEDF IS DDGL FEGRLCV EDSAVK
Sbjct: 798 QLSVQPTLRQRIIVAQLNDPYLVEKRRLVETGQGEDFSISFDDGLMFEGRLCVPEDSAVK 857

Query: 182 TELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAG 241
           TELLTEAHSSPFTMHPG+TKMYQDLRSVYWWRNMKREVADFVS+CLVCQQVKAPRQRPAG
Sbjct: 858 TELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPAG 917

Query: 242 LLQPLSVPG 251
           LLQPLSVPG
Sbjct: 918 LLQPLSVPG 926

[Close]

BLAST of Cmc08g0222221 vs. NCBI nr
Match: TYK24364.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 452.2 bits (1162), Expect = 2.9e-123
Identity = 226/249 (90.76%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 2   SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLEL 61
           SHEQNYPTH LEL AVVFALKIWRHYLY EKIQI+TDHKSLKYFF QKELNMR RRWLEL
Sbjct: 678 SHEQNYPTHYLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRHRRWLEL 737

Query: 62  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 121
           VKDYDCEILYHPGKANVVA  LSR V HSA LIT QAPLLRDFER EIAVSVGEVTSQL 
Sbjct: 738 VKDYDCEILYHPGKANVVADALSRKVAHSAALITKQAPLLRDFERAEIAVSVGEVTSQLA 797

Query: 122 QLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVK 181
           QLSVQPTLRQRIIV QLN  YLVEKRRLVETGQGEDF IS DDGL FEGRLCV EDSAVK
Sbjct: 798 QLSVQPTLRQRIIVAQLNDPYLVEKRRLVETGQGEDFSISFDDGLMFEGRLCVPEDSAVK 857

Query: 182 TELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAG 241
           TELLTEAHSSPFTMHPG+TKMYQDLRSVYWWRNMKREVADFVS+CLVCQQVKAPRQRPAG
Sbjct: 858 TELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPAG 917

Query: 242 LLQPLSVPG 251
           LLQPLSVPG
Sbjct: 918 LLQPLSVPG 926

[Close]

BLAST of Cmc08g0222221 vs. NCBI nr
Match: TYK21801.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 450.3 bits (1157), Expect = 1.1e-122
Identity = 225/249 (90.36%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 2   SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLEL 61
           SHEQNYPTHELEL AVVFALKIWRHYL  EKIQIFTDHKSLKYFF QK+LNMRQRRWLEL
Sbjct: 206 SHEQNYPTHELELAAVVFALKIWRHYLCGEKIQIFTDHKSLKYFFTQKKLNMRQRRWLEL 265

Query: 62  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 121
           VKDYDCEILYH G ANVVA  LS+ V HSA LIT QAPLLRDFERVEIAVSVGEV SQL 
Sbjct: 266 VKDYDCEILYHTGNANVVAVALSKKVAHSAALITKQAPLLRDFERVEIAVSVGEVASQLA 325

Query: 122 QLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVK 181
           QLSVQPTLRQRIIV QLN  YLVEKRRLV+TGQGEDF ISSDDGLTFEGRLCVSEDSAVK
Sbjct: 326 QLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTGQGEDFSISSDDGLTFEGRLCVSEDSAVK 385

Query: 182 TELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAG 241
           TELLTEAHSSPFTMHPG+TKMYQDLRSVYWWRNMKREVA+FVS+CLVCQQVKAPRQRPAG
Sbjct: 386 TELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVANFVSRCLVCQQVKAPRQRPAG 445

Query: 242 LLQPLSVPG 251
           LLQPLSVPG
Sbjct: 446 LLQPLSVPG 454

[Close]

BLAST of Cmc08g0222221 vs. NCBI nr
Match: KAA0035188.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 450.3 bits (1157), Expect = 1.1e-122
Identity = 225/249 (90.36%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 2   SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLEL 61
           SHEQNYPTHELEL AVVFALKIWRHYL  EKIQIFTDHKSLKYFF QK+LNMRQRRWLEL
Sbjct: 206 SHEQNYPTHELELAAVVFALKIWRHYLCGEKIQIFTDHKSLKYFFTQKKLNMRQRRWLEL 265

Query: 62  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 121
           VKDYDCEILYH G ANVVA  LS+ V HSA LIT QAPLLRDFERVEIAVSVGEV SQL 
Sbjct: 266 VKDYDCEILYHTGNANVVAVALSKKVAHSAALITKQAPLLRDFERVEIAVSVGEVASQLA 325

Query: 122 QLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVK 181
           QLSVQPTLRQRIIV QLN  YLVEKRRLV+TGQGEDF ISSDDGLTFEGRLCVSEDSAVK
Sbjct: 326 QLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTGQGEDFSISSDDGLTFEGRLCVSEDSAVK 385

Query: 182 TELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAG 241
           TELLTEAHSSPFTMHPG+TKMYQDLRSVYWWRNMKREVA+FVS+CLVCQQVKAPRQRPAG
Sbjct: 386 TELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVANFVSRCLVCQQVKAPRQRPAG 445

Query: 242 LLQPLSVPG 251
           LLQPLSVPG
Sbjct: 446 LLQPLSVPG 454

[Close]

BLAST of Cmc08g0222221 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.6e-18
Identity = 66/251 (26.29%), Postives = 123/251 (49.00%), Query Frame = 0


Query: 6   NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLEL 65
           NY   + E++A++ +LK WRHYL S  E  +I TDH++L  +     +  N R  RW   
Sbjct: 748 NYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLF 807

Query: 66  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 125
           ++D++ EI Y PG AN +A  LSR       ++    P+ +D E   I        + + 
Sbjct: 808 LQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSI--------NFVN 867

Query: 126 QLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVS 185
           Q+S+    + +++    N + L+     E +R+ E  Q +D   I+S D      ++ + 
Sbjct: 868 QISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKD------QILLP 927

Query: 186 EDSAVKTELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAP 245
            D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+ 
Sbjct: 928 NDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSR 977

Query: 246 RQRPAGLLQPL 247
             +P G LQP+
Sbjct: 988 NHKPYGPLQPI 977

[Close]

BLAST of Cmc08g0222221 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.6e-18
Identity = 66/251 (26.29%), Postives = 123/251 (49.00%), Query Frame = 0


Query: 6   NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLEL 65
           NY   + E++A++ +LK WRHYL S  E  +I TDH++L  +     +  N R  RW   
Sbjct: 748 NYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLF 807

Query: 66  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 125
           ++D++ EI Y PG AN +A  LSR       ++    P+ +D E   I        + + 
Sbjct: 808 LQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSI--------NFVN 867

Query: 126 QLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVS 185
           Q+S+    + +++    N + L+     E +R+ E  Q +D   I+S D      ++ + 
Sbjct: 868 QISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKD------QILLP 927

Query: 186 EDSAVKTELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAP 245
            D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+ 
Sbjct: 928 NDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSR 977

Query: 246 RQRPAGLLQPL 247
             +P G LQP+
Sbjct: 988 NHKPYGPLQPI 977

[Close]

BLAST of Cmc08g0222221 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.6e-18
Identity = 66/251 (26.29%), Postives = 123/251 (49.00%), Query Frame = 0


Query: 6   NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLEL 65
           NY   + E++A++ +LK WRHYL S  E  +I TDH++L  +     +  N R  RW   
Sbjct: 748 NYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLF 807

Query: 66  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 125
           ++D++ EI Y PG AN +A  LSR       ++    P+ +D E   I        + + 
Sbjct: 808 LQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSI--------NFVN 867

Query: 126 QLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVS 185
           Q+S+    + +++    N + L+     E +R+ E  Q +D   I+S D      ++ + 
Sbjct: 868 QISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKD------QILLP 927

Query: 186 EDSAVKTELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAP 245
            D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+ 
Sbjct: 928 NDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSR 977

Query: 246 RQRPAGLLQPL 247
             +P G LQP+
Sbjct: 988 NHKPYGPLQPI 977

[Close]

BLAST of Cmc08g0222221 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.6e-18
Identity = 66/251 (26.29%), Postives = 123/251 (49.00%), Query Frame = 0


Query: 6   NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLEL 65
           NY   + E++A++ +LK WRHYL S  E  +I TDH++L  +     +  N R  RW   
Sbjct: 748 NYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLF 807

Query: 66  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 125
           ++D++ EI Y PG AN +A  LSR       ++    P+ +D E   I        + + 
Sbjct: 808 LQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSI--------NFVN 867

Query: 126 QLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVS 185
           Q+S+    + +++    N + L+     E +R+ E  Q +D   I+S D      ++ + 
Sbjct: 868 QISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKD------QILLP 927

Query: 186 EDSAVKTELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAP 245
            D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+ 
Sbjct: 928 NDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSR 977

Query: 246 RQRPAGLLQPL 247
             +P G LQP+
Sbjct: 988 NHKPYGPLQPI 977

[Close]

BLAST of Cmc08g0222221 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.6e-18
Identity = 66/251 (26.29%), Postives = 123/251 (49.00%), Query Frame = 0


Query: 6   NYPTHELELVAVVFALKIWRHYLYS--EKIQIFTDHKSL--KYFFIQKELNMRQRRWLEL 65
           NY   + E++A++ +LK WRHYL S  E  +I TDH++L  +     +  N R  RW   
Sbjct: 748 NYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLF 807

Query: 66  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 125
           ++D++ EI Y PG AN +A  LSR       ++    P+ +D E   I        + + 
Sbjct: 808 LQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSI--------NFVN 867

Query: 126 QLSVQPTLRQRIIVVQLNGSYLV-----EKRRLVETGQGED-FFISSDDGLTFEGRLCVS 185
           Q+S+    + +++    N + L+     E +R+ E  Q +D   I+S D      ++ + 
Sbjct: 868 QISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKD------QILLP 927

Query: 186 EDSAVKTELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAP 245
            D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+ 
Sbjct: 928 NDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSR 977

Query: 246 RQRPAGLLQPL 247
             +P G LQP+
Sbjct: 988 NHKPYGPLQPI 977

[Close]

BLAST of Cmc08g0222221 vs. ExPASy TrEMBL
Match: A0A5A7U8T4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001960 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.7e-124
Identity = 225/249 (90.36%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 2   SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLEL 61
           SHEQNYPTH+LEL AVVFALKIWRHYLY EKIQI TDHKSLKYFF QKELNMRQRRWLEL
Sbjct: 613 SHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIITDHKSLKYFFTQKELNMRQRRWLEL 672

Query: 62  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 121
           VKDYDCE+LYHPGKANVVA  LSR V HSA LIT QAPLLRDFER EIAVSVGEVTSQL 
Sbjct: 673 VKDYDCEMLYHPGKANVVADALSRKVAHSAALITKQAPLLRDFERAEIAVSVGEVTSQLA 732

Query: 122 QLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVK 181
           QLSVQPTLRQRIIV QLN  YLVEKRRLVETGQGEDF ISSDDGLTFEGRLCV +DSA+K
Sbjct: 733 QLSVQPTLRQRIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGLTFEGRLCVPKDSAIK 792

Query: 182 TELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAG 241
           TELLTE HSSPFTMHPG+TKMYQDLRSVYWWRNMKREVADFVS+CLVCQQVKAPRQRPAG
Sbjct: 793 TELLTEIHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPAG 852

Query: 242 LLQPLSVPG 251
           LLQPLSVPG
Sbjct: 853 LLQPLSVPG 861

[Close]

BLAST of Cmc08g0222221 vs. ExPASy TrEMBL
Match: A0A5A7TDX1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G00780 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.4e-123
Identity = 226/249 (90.76%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 2   SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLEL 61
           SHEQNYPTH LEL AVVFALKIWRHYLY EKIQI+TDHKSLKYFF QKELNMR RRWLEL
Sbjct: 678 SHEQNYPTHYLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRHRRWLEL 737

Query: 62  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 121
           VKDYDCEILYHPGKANVVA  LSR V HSA LIT QAPLLRDFER EIAVSVGEVTSQL 
Sbjct: 738 VKDYDCEILYHPGKANVVADALSRKVAHSAALITKQAPLLRDFERAEIAVSVGEVTSQLA 797

Query: 122 QLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVK 181
           QLSVQPTLRQRIIV QLN  YLVEKRRLVETGQGEDF IS DDGL FEGRLCV EDSAVK
Sbjct: 798 QLSVQPTLRQRIIVAQLNDPYLVEKRRLVETGQGEDFSISFDDGLMFEGRLCVPEDSAVK 857

Query: 182 TELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAG 241
           TELLTEAHSSPFTMHPG+TKMYQDLRSVYWWRNMKREVADFVS+CLVCQQVKAPRQRPAG
Sbjct: 858 TELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPAG 917

Query: 242 LLQPLSVPG 251
           LLQPLSVPG
Sbjct: 918 LLQPLSVPG 926

[Close]

BLAST of Cmc08g0222221 vs. ExPASy TrEMBL
Match: A0A5D3DL91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001470 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.4e-123
Identity = 226/249 (90.76%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 2   SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLEL 61
           SHEQNYPTH LEL AVVFALKIWRHYLY EKIQI+TDHKSLKYFF QKELNMR RRWLEL
Sbjct: 678 SHEQNYPTHYLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRHRRWLEL 737

Query: 62  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 121
           VKDYDCEILYHPGKANVVA  LSR V HSA LIT QAPLLRDFER EIAVSVGEVTSQL 
Sbjct: 738 VKDYDCEILYHPGKANVVADALSRKVAHSAALITKQAPLLRDFERAEIAVSVGEVTSQLA 797

Query: 122 QLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVK 181
           QLSVQPTLRQRIIV QLN  YLVEKRRLVETGQGEDF IS DDGL FEGRLCV EDSAVK
Sbjct: 798 QLSVQPTLRQRIIVAQLNDPYLVEKRRLVETGQGEDFSISFDDGLMFEGRLCVPEDSAVK 857

Query: 182 TELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAG 241
           TELLTEAHSSPFTMHPG+TKMYQDLRSVYWWRNMKREVADFVS+CLVCQQVKAPRQRPAG
Sbjct: 858 TELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPAG 917

Query: 242 LLQPLSVPG 251
           LLQPLSVPG
Sbjct: 918 LLQPLSVPG 926

[Close]

BLAST of Cmc08g0222221 vs. ExPASy TrEMBL
Match: A0A5D3DDR0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00070 PE=4 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 5.3e-123
Identity = 225/249 (90.36%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 2   SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLEL 61
           SHEQNYPTHELEL AVVFALKIWRHYL  EKIQIFTDHKSLKYFF QK+LNMRQRRWLEL
Sbjct: 206 SHEQNYPTHELELAAVVFALKIWRHYLCGEKIQIFTDHKSLKYFFTQKKLNMRQRRWLEL 265

Query: 62  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 121
           VKDYDCEILYH G ANVVA  LS+ V HSA LIT QAPLLRDFERVEIAVSVGEV SQL 
Sbjct: 266 VKDYDCEILYHTGNANVVAVALSKKVAHSAALITKQAPLLRDFERVEIAVSVGEVASQLA 325

Query: 122 QLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVK 181
           QLSVQPTLRQRIIV QLN  YLVEKRRLV+TGQGEDF ISSDDGLTFEGRLCVSEDSAVK
Sbjct: 326 QLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTGQGEDFSISSDDGLTFEGRLCVSEDSAVK 385

Query: 182 TELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAG 241
           TELLTEAHSSPFTMHPG+TKMYQDLRSVYWWRNMKREVA+FVS+CLVCQQVKAPRQRPAG
Sbjct: 386 TELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVANFVSRCLVCQQVKAPRQRPAG 445

Query: 242 LLQPLSVPG 251
           LLQPLSVPG
Sbjct: 446 LLQPLSVPG 454

[Close]

BLAST of Cmc08g0222221 vs. ExPASy TrEMBL
Match: A0A5A7SX56 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold346G00060 PE=4 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 5.3e-123
Identity = 225/249 (90.36%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 2   SHEQNYPTHELELVAVVFALKIWRHYLYSEKIQIFTDHKSLKYFFIQKELNMRQRRWLEL 61
           SHEQNYPTHELEL AVVFALKIWRHYL  EKIQIFTDHKSLKYFF QK+LNMRQRRWLEL
Sbjct: 206 SHEQNYPTHELELAAVVFALKIWRHYLCGEKIQIFTDHKSLKYFFTQKKLNMRQRRWLEL 265

Query: 62  VKDYDCEILYHPGKANVVAYTLSRNVPHSAELITNQAPLLRDFERVEIAVSVGEVTSQLV 121
           VKDYDCEILYH G ANVVA  LS+ V HSA LIT QAPLLRDFERVEIAVSVGEV SQL 
Sbjct: 266 VKDYDCEILYHTGNANVVAVALSKKVAHSAALITKQAPLLRDFERVEIAVSVGEVASQLA 325

Query: 122 QLSVQPTLRQRIIVVQLNGSYLVEKRRLVETGQGEDFFISSDDGLTFEGRLCVSEDSAVK 181
           QLSVQPTLRQRIIV QLN  YLVEKRRLV+TGQGEDF ISSDDGLTFEGRLCVSEDSAVK
Sbjct: 326 QLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTGQGEDFSISSDDGLTFEGRLCVSEDSAVK 385

Query: 182 TELLTEAHSSPFTMHPGTTKMYQDLRSVYWWRNMKREVADFVSKCLVCQQVKAPRQRPAG 241
           TELLTEAHSSPFTMHPG+TKMYQDLRSVYWWRNMKREVA+FVS+CLVCQQVKAPRQRPAG
Sbjct: 386 TELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVANFVSRCLVCQQVKAPRQRPAG 445

Query: 242 LLQPLSVPG 251
           LLQPLSVPG
Sbjct: 446 LLQPLSVPG 454

The following BLAST results are available for this feature:

BLAST of Cmc08g0222221 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050011.1	7.6e-124	90.36	pol protein [Cucumis melo var. makuwa]	[more]
KAA0041490.1	2.9e-123	90.76	hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa]	[more]
TYK24364.1	2.9e-123	90.76	putative polyprotein [Cucumis melo var. makuwa]	[more]
TYK21801.1	1.1e-122	90.36	pol protein [Cucumis melo var. makuwa]	[more]
KAA0035188.1	1.1e-122	90.36	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0222221 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	7.6e-18	26.29	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	7.6e-18	26.29	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	7.6e-18	26.29	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	7.6e-18	26.29	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	7.6e-18	26.29	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc08g0222221 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U8T4	3.7e-124	90.36	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001960 PE...	[more]
A0A5A7TDX1	1.4e-123	90.76	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G...	[more]
A0A5D3DL91	1.4e-123	90.76	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20...	[more]
A0A5D3DDR0	5.3e-123	90.36	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00070 PE...	[more]
A0A5A7SX56	5.3e-123	90.36	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold346G00060 PE...	[more]

BLAST of Cmc08g0222221 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 179..234 e-value: 6.4E-18 score: 64.6
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 3..65 e-value: 1.3E-20 score: 73.7
None	No IPR available	GENE3D	1.10.340.70		coord: 141..233 e-value: 4.6E-18 score: 67.2
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 3..82
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 3..82
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 2..87 e-value: 2.32977E-42 score: 138.394
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0222221.1	Cmc08g0222221.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding