Cmc08g0222161 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0222161
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr08: 10541247 .. 10541843 (+)
RNA-Seq Expression	Cmc08g0222161
Synteny	Cmc08g0222161

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCTTGGTGAAAGAGGATATTCCAGGGGTGAGATTGACAAGACACTATTCATAAATAGAACCAACACTGATCTCATTGTAACTCAAATTTATGTTGATGACATCATCTTTGGTGGATTTCCTAAAACTCTTGTTGATAATTTCATTAACATAATGAAATCAGAATTCGAAATGAGCCTAGTAGGTGAACTATCATGCTTTCTGGGGTTGCAGATCAAACAGGGAAGTGAGGGAATGTTTATATCACAGGAGAAGTATGCCAAGAACTTAGTCAAGAAGTTTGGTCTGGATCAGTCACAACACAAAAGGACTCTTGTTGCGACTCATGCTAAAATTACAAAGGATATGGTAGGTACTGAAGTTGATCACAAATTGTACAGAAGCATGATTAGAAGCCTTTTATATTTGACAGCAAGCAGACCTGATATTGCCTATGCTGTGGGAATATGTGCTCAGTATCAGTCAGATCCACGTACCTCTCATTTAAATGTAGTTAAACGAATAATTAAGTATGTTCATGGAACAACTGACTTCGAGATTCTGTACTCCTATGATACATCCTCTAAACTAGTGGGATATTGTGATGCCGACTGA

mRNA sequence

ATGTATCTTGGTGAAAGAGGATATTCCAGGGGTGAGATTGACAAGACACTATTCATAAATAGAACCAACACTGATCTCATTGTAACTCAAATTTATGTTGATGACATCATCTTTGGTGGATTTCCTAAAACTCTTGTTGATAATTTCATTAACATAATGAAATCAGAATTCGAAATGAGCCTAGTAGGTGAACTATCATGCTTTCTGGGGTTGCAGATCAAACAGGGAAGTGAGGGAATGTTTATATCACAGGAGAAGTATGCCAAGAACTTAGTCAAGAAGTTTGGTCTGGATCAGTCACAACACAAAAGGACTCTTGTTGCGACTCATGCTAAAATTACAAAGGATATGGTAGGTACTGAAGTTGATCACAAATTGTACAGAAGCATGATTAGAAGCCTTTTATATTTGACAGCAAGCAGACCTGATATTGCCTATGCTGTGGGAATATGTGCTCAGTATCAGTCAGATCCACGTACCTCTCATTTAAATGTAGTTAAACGAATAATTAAGTATGTTCATGGAACAACTGACTTCGAGATTCTGTACTCCTATGATACATCCTCTAAACTAGTGGGATATTGTGATGCCGACTGA

Coding sequence (CDS)

ATGTATCTTGGTGAAAGAGGATATTCCAGGGGTGAGATTGACAAGACACTATTCATAAATAGAACCAACACTGATCTCATTGTAACTCAAATTTATGTTGATGACATCATCTTTGGTGGATTTCCTAAAACTCTTGTTGATAATTTCATTAACATAATGAAATCAGAATTCGAAATGAGCCTAGTAGGTGAACTATCATGCTTTCTGGGGTTGCAGATCAAACAGGGAAGTGAGGGAATGTTTATATCACAGGAGAAGTATGCCAAGAACTTAGTCAAGAAGTTTGGTCTGGATCAGTCACAACACAAAAGGACTCTTGTTGCGACTCATGCTAAAATTACAAAGGATATGGTAGGTACTGAAGTTGATCACAAATTGTACAGAAGCATGATTAGAAGCCTTTTATATTTGACAGCAAGCAGACCTGATATTGCCTATGCTGTGGGAATATGTGCTCAGTATCAGTCAGATCCACGTACCTCTCATTTAAATGTAGTTAAACGAATAATTAAGTATGTTCATGGAACAACTGACTTCGAGATTCTGTACTCCTATGATACATCCTCTAAACTAGTGGGATATTGTGATGCCGACTGA

Protein sequence

MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGTEVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFEILYSYDTSSKLVGYCDAD

Homology

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BLAST of Cmc08g0222161 vs. NCBI nr
Match: XP_016901806.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo])

HSP 1 Score: 397.1 bits (1019), Expect = 8.7e-107
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 60
           MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS
Sbjct: 1   MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 60

Query: 61  LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT 120
           LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT
Sbjct: 61  LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT 120

Query: 121 EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFE 180
           EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFE
Sbjct: 121 EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFE 180

Query: 181 ILYSYDTSSKLVGYCDAD 199
           ILYSYDTSSKLVGYCDAD
Sbjct: 181 ILYSYDTSSKLVGYCDAD 198

[Close]

BLAST of Cmc08g0222161 vs. NCBI nr
Match: TYK08856.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 386.3 bits (991), Expect = 1.5e-103
Identity = 194/198 (97.98%), Postives = 195/198 (98.48%), Query Frame = 0


Query: 1   MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 60
           MYLGERGYS GEIDKTLFINRTNTDLIVTQIYVDDIIFGGF KTLVDNFINIMKSEFEMS
Sbjct: 176 MYLGERGYSMGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFLKTLVDNFINIMKSEFEMS 235

Query: 61  LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT 120
           LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT
Sbjct: 236 LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT 295

Query: 121 EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFE 180
           EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQS+PRTSHLNVVKRIIKYVHGTTDF 
Sbjct: 296 EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSNPRTSHLNVVKRIIKYVHGTTDFG 355

Query: 181 ILYSYDTSSKLVGYCDAD 199
           ILYSYDTSSKLVGYCDAD
Sbjct: 356 ILYSYDTSSKLVGYCDAD 373

[Close]

BLAST of Cmc08g0222161 vs. NCBI nr
Match: KAA0054435.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK14601.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 354.4 bits (908), Expect = 6.5e-94
Identity = 178/198 (89.90%), Postives = 184/198 (92.93%), Query Frame = 0


Query: 1    MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 60
            MYLGER YSRGE DKTLFINRT+T+LIV QIYVDDIIFGGFPKTLVDNFINIMKSEFEMS
Sbjct: 813  MYLGERVYSRGETDKTLFINRTSTNLIVAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 872

Query: 61   LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT 120
            LVGELSCFLGLQIKQ SEGMFISQEKYAKNLVKKFGLDQSQHKRT   THAKITKDMVGT
Sbjct: 873  LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQHKRTPAVTHAKITKDMVGT 932

Query: 121  EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFE 180
            EVDHKLYRSMI SLLYLT SRPDIAY VGICA+YQSD RTSHLN +KRIIKYVHGTTDF 
Sbjct: 933  EVDHKLYRSMIGSLLYLTTSRPDIAYVVGICARYQSDSRTSHLNAIKRIIKYVHGTTDFG 992

Query: 181  ILYSYDTSSKLVGYCDAD 199
            ILYSYDTSS+LVGY +AD
Sbjct: 993  ILYSYDTSSELVGYYNAD 1010

[Close]

BLAST of Cmc08g0222161 vs. NCBI nr
Match: TYJ98295.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 350.1 bits (897), Expect = 1.2e-92
Identity = 174/198 (87.88%), Postives = 186/198 (93.94%), Query Frame = 0


Query: 1   MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 60
           +YL ERGYS+GE DKTLFINRT+TDLIV QIYVDDIIFGGFPKTLV+NFINI+KSEFE+S
Sbjct: 588 IYLDERGYSKGETDKTLFINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIIKSEFEIS 647

Query: 61  LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT 120
           LVG+LS FLGLQIKQ S+GMFISQEKYAKNLVKKFGLDQSQ+KRTL ATH KITKD VGT
Sbjct: 648 LVGKLSYFLGLQIKQRSKGMFISQEKYAKNLVKKFGLDQSQYKRTLAATHVKITKDTVGT 707

Query: 121 EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFE 180
            +DHKLYRSMI SLLYLTASRPDIAYAVGICA+YQSDPRTSHLN VKRIIKYVHGTTDF 
Sbjct: 708 AIDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTTDFG 767

Query: 181 ILYSYDTSSKLVGYCDAD 199
           ILYSYDTSS+LVGYCDAD
Sbjct: 768 ILYSYDTSSELVGYCDAD 785

[Close]

BLAST of Cmc08g0222161 vs. NCBI nr
Match: KAA0031683.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04427.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 348.6 bits (893), Expect = 3.6e-92
Identity = 174/197 (88.32%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 1   MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 60
           MYLGERGYSRGE DKTLFIN+T+TDLIV QIYVDDIIFGGFPKTLV+NFINIMKSEFEMS
Sbjct: 223 MYLGERGYSRGETDKTLFINKTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 282

Query: 61  LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT 120
           LVGELSCFLGLQIKQ SEGMFISQEKYAKNLVKKFGL QSQ+K+T  ATH KITKD +GT
Sbjct: 283 LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLYQSQYKKTPAATHTKITKDTIGT 342

Query: 121 EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFE 180
            VDHKLYRSMI SLLYL AS PDI YAVGIC +YQSDPRTSHLN VKRIIKYVHGTTDF 
Sbjct: 343 AVDHKLYRSMIGSLLYLIASIPDIDYAVGICVRYQSDPRTSHLNAVKRIIKYVHGTTDFR 402

Query: 181 ILYSYDTSSKLVGYCDA 198
           ILYSYDTSSKLVGYCDA
Sbjct: 403 ILYSYDTSSKLVGYCDA 419

[Close]

BLAST of Cmc08g0222161 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.3e-22
Identity = 60/197 (30.46%), Postives = 101/197 (51.27%), Query Frame = 0


Query: 2    YLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSL 61
            YL   G+     D +LF+ +    +I   +YVDDI+  G    L+ + ++ +   F +  
Sbjct: 1103 YLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKE 1162

Query: 62   VGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGTE 121
              +L  FLG++ K+  +G+ +SQ +Y  +L+ +  +  ++   T +AT  K+T       
Sbjct: 1163 HEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKL 1222

Query: 122  VDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFEI 181
             D   YR ++ SL YL  +RPD++YAV   +QY   P   H N +KR+++Y+ GT D  I
Sbjct: 1223 PDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGI 1282

Query: 182  LYSYDTSSKLVGYCDAD 199
                  +  L  Y DAD
Sbjct: 1283 FLKKGNTLSLHAYSDAD 1299

[Close]

BLAST of Cmc08g0222161 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.8e-21
Identity = 60/197 (30.46%), Postives = 100/197 (50.76%), Query Frame = 0


Query: 2    YLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSL 61
            YL   G+     D +LF+ +    ++   +YVDDI+  G   TL+ N ++ +   F +  
Sbjct: 1120 YLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKD 1179

Query: 62   VGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGTE 121
              EL  FLG++ K+   G+ +SQ +Y  +L+ +  +  ++   T +A   K++       
Sbjct: 1180 HEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKL 1239

Query: 122  VDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFEI 181
             D   YR ++ SL YL  +RPDI+YAV   +Q+   P   HL  +KRI++Y+ GT +  I
Sbjct: 1240 TDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGI 1299

Query: 182  LYSYDTSSKLVGYCDAD 199
                  +  L  Y DAD
Sbjct: 1300 FLKKGNTLSLHAYSDAD 1316

[Close]

BLAST of Cmc08g0222161 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.4e-20
Identity = 62/207 (29.95%), Postives = 112/207 (54.11%), Query Frame = 0


Query: 2    YLGERGYSRGEIDKTLFINR-TNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 61
            ++  + Y +   D  ++  R +  + I+  +YVDD++  G  K L+      +   F+M 
Sbjct: 977  FMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMK 1036

Query: 62   LVGELSCFLGLQI--KQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMV 121
             +G     LG++I  ++ S  +++SQEKY + ++++F +  ++   T +A H K++K M 
Sbjct: 1037 DLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMC 1096

Query: 122  GTEVDHK------LYRSMIRSLLY-LTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIK 181
             T V+ K       Y S + SL+Y +  +RPDIA+AVG+ +++  +P   H   VK I++
Sbjct: 1097 PTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILR 1156

Query: 182  YVHGTTDFEILYSYDTSSKLVGYCDAD 199
            Y+ GTT  + L    +   L GY DAD
Sbjct: 1157 YLRGTTG-DCLCFGGSDPILKGYTDAD 1182

[Close]

BLAST of Cmc08g0222161 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 59/170 (34.71%), Postives = 96/170 (56.47%), Query Frame = 0


Query: 31  IYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLQIKQGSEGMFISQEKYAKN 90
           +YVDDI+  G   TL++  I  + S F M  +G +  FLG+QIK    G+F+SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 91  LVKKFGLDQSQHKRTLVATHAKITKDMVGTEV-DHKLYRSMIRSLLYLTASRPDIAYAVG 150
           ++   G+   +   T +    K+   +   +  D   +RS++ +L YLT +RPDI+YAV 
Sbjct: 65  ILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 124

Query: 151 ICAQYQSDPRTSHLNVVKRIIKYVHGTTDFEILYSYDTSS-KLVGYCDAD 199
           I  Q   +P  +  +++KR+++YV GT  F  LY +  S   +  +CD+D
Sbjct: 125 IVCQRMHEPTLADFDLLKRVLRYVKGTI-FHGLYIHKNSKLNVQAFCDSD 171

[Close]

BLAST of Cmc08g0222161 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-13
Identity = 53/200 (26.50%), Postives = 96/200 (48.00%), Query Frame = 0


Query: 7   GYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELS 66
           G+ R E +  L+   T+   I   +YVDD++       + D     +   + M  +G++ 
Sbjct: 62  GFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVD 121

Query: 67  CFLGLQIKQGSEG-MFISQEKY-----AKNLVKKFGLDQSQ--HKRTLVATHAKITKDMV 126
            FLGL I Q S G + +S + Y     +++ +  F L Q+   + + L  T +   KD+ 
Sbjct: 122 KFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDIT 181

Query: 127 GTEVDHKLYRSMIRSLLY-LTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTT 186
                   Y+S++  LL+     RPDI+Y V + +++  +PR  HL   +R+++Y++ T 
Sbjct: 182 P-------YQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTR 241

Query: 187 DFEILYSYDTSSKLVGYCDA 198
              + Y   +   L  YCDA
Sbjct: 242 SMCLKYRSGSQLALTVYCDA 254

[Close]

BLAST of Cmc08g0222161 vs. ExPASy TrEMBL
Match: A0A1S4E0Q2 (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107991414 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 4.2e-107
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 60
           MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS
Sbjct: 1   MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 60

Query: 61  LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT 120
           LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT
Sbjct: 61  LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT 120

Query: 121 EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFE 180
           EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFE
Sbjct: 121 EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFE 180

Query: 181 ILYSYDTSSKLVGYCDAD 199
           ILYSYDTSSKLVGYCDAD
Sbjct: 181 ILYSYDTSSKLVGYCDAD 198

[Close]

BLAST of Cmc08g0222161 vs. ExPASy TrEMBL
Match: A0A5D3CER9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00450 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.5e-104
Identity = 194/198 (97.98%), Postives = 195/198 (98.48%), Query Frame = 0


Query: 1   MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 60
           MYLGERGYS GEIDKTLFINRTNTDLIVTQIYVDDIIFGGF KTLVDNFINIMKSEFEMS
Sbjct: 176 MYLGERGYSMGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFLKTLVDNFINIMKSEFEMS 235

Query: 61  LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT 120
           LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT
Sbjct: 236 LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT 295

Query: 121 EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFE 180
           EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQS+PRTSHLNVVKRIIKYVHGTTDF 
Sbjct: 296 EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSNPRTSHLNVVKRIIKYVHGTTDFG 355

Query: 181 ILYSYDTSSKLVGYCDAD 199
           ILYSYDTSSKLVGYCDAD
Sbjct: 356 ILYSYDTSSKLVGYCDAD 373

[Close]

BLAST of Cmc08g0222161 vs. ExPASy TrEMBL
Match: A0A5D3CS19 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G001080 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.1e-94
Identity = 178/198 (89.90%), Postives = 184/198 (92.93%), Query Frame = 0


Query: 1    MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 60
            MYLGER YSRGE DKTLFINRT+T+LIV QIYVDDIIFGGFPKTLVDNFINIMKSEFEMS
Sbjct: 813  MYLGERVYSRGETDKTLFINRTSTNLIVAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 872

Query: 61   LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT 120
            LVGELSCFLGLQIKQ SEGMFISQEKYAKNLVKKFGLDQSQHKRT   THAKITKDMVGT
Sbjct: 873  LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQHKRTPAVTHAKITKDMVGT 932

Query: 121  EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFE 180
            EVDHKLYRSMI SLLYLT SRPDIAY VGICA+YQSD RTSHLN +KRIIKYVHGTTDF 
Sbjct: 933  EVDHKLYRSMIGSLLYLTTSRPDIAYVVGICARYQSDSRTSHLNAIKRIIKYVHGTTDFG 992

Query: 181  ILYSYDTSSKLVGYCDAD 199
            ILYSYDTSS+LVGY +AD
Sbjct: 993  ILYSYDTSSELVGYYNAD 1010

[Close]

BLAST of Cmc08g0222161 vs. ExPASy TrEMBL
Match: A0A5D3BIP9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00070 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 5.9e-93
Identity = 174/198 (87.88%), Postives = 186/198 (93.94%), Query Frame = 0


Query: 1   MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 60
           +YL ERGYS+GE DKTLFINRT+TDLIV QIYVDDIIFGGFPKTLV+NFINI+KSEFE+S
Sbjct: 588 IYLDERGYSKGETDKTLFINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIIKSEFEIS 647

Query: 61  LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT 120
           LVG+LS FLGLQIKQ S+GMFISQEKYAKNLVKKFGLDQSQ+KRTL ATH KITKD VGT
Sbjct: 648 LVGKLSYFLGLQIKQRSKGMFISQEKYAKNLVKKFGLDQSQYKRTLAATHVKITKDTVGT 707

Query: 121 EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFE 180
            +DHKLYRSMI SLLYLTASRPDIAYAVGICA+YQSDPRTSHLN VKRIIKYVHGTTDF 
Sbjct: 708 AIDHKLYRSMIGSLLYLTASRPDIAYAVGICARYQSDPRTSHLNAVKRIIKYVHGTTDFG 767

Query: 181 ILYSYDTSSKLVGYCDAD 199
           ILYSYDTSS+LVGYCDAD
Sbjct: 768 ILYSYDTSSELVGYCDAD 785

[Close]

BLAST of Cmc08g0222161 vs. ExPASy TrEMBL
Match: A0A5D3BY43 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00230 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.7e-92
Identity = 174/197 (88.32%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 1   MYLGERGYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMS 60
           MYLGERGYSRGE DKTLFIN+T+TDLIV QIYVDDIIFGGFPKTLV+NFINIMKSEFEMS
Sbjct: 223 MYLGERGYSRGETDKTLFINKTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMS 282

Query: 61  LVGELSCFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGT 120
           LVGELSCFLGLQIKQ SEGMFISQEKYAKNLVKKFGL QSQ+K+T  ATH KITKD +GT
Sbjct: 283 LVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLYQSQYKKTPAATHTKITKDTIGT 342

Query: 121 EVDHKLYRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFE 180
            VDHKLYRSMI SLLYL AS PDI YAVGIC +YQSDPRTSHLN VKRIIKYVHGTTDF 
Sbjct: 343 AVDHKLYRSMIGSLLYLIASIPDIDYAVGICVRYQSDPRTSHLNAVKRIIKYVHGTTDFR 402

Query: 181 ILYSYDTSSKLVGYCDA 198
           ILYSYDTSSKLVGYCDA
Sbjct: 403 ILYSYDTSSKLVGYCDA 419

[Close]

BLAST of Cmc08g0222161 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 101.3 bits (251), Expect = 9.2e-22
Identity = 62/191 (32.46%), Postives = 96/191 (50.26%), Query Frame = 0


Query: 7   GYSRGEIDKTLFINRTNTDLIVTQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELS 66
           G+ +   D T F+  T T  +   +YVDDII        VD   + +KS F++  +G L 
Sbjct: 258 GFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLK 317

Query: 67  CFLGLQIKQGSEGMFISQEKYAKNLVKKFGLDQSQHKRTLVATHAKITKDMVGTEVDHKL 126
            FLGL+I + + G+ I Q KYA +L+ + GL   +     +      +    G  VD K 
Sbjct: 318 YFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKA 377

Query: 127 YRSMIRSLLYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFEILYSYD 186
           YR +I  L+YL  +R DI++AV   +Q+   PR +H   V +I+ Y+ GT    + YS  
Sbjct: 378 YRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQ 437

Query: 187 TSSKLVGYCDA 198
              +L  + DA
Sbjct: 438 AEMQLQVFSDA 448

[Close]

BLAST of Cmc08g0222161 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 98.2 bits (243), Expect = 7.8e-21
Identity = 59/170 (34.71%), Postives = 96/170 (56.47%), Query Frame = 0


Query: 31  IYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGELSCFLGLQIKQGSEGMFISQEKYAKN 90
           +YVDDI+  G   TL++  I  + S F M  +G +  FLG+QIK    G+F+SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 91  LVKKFGLDQSQHKRTLVATHAKITKDMVGTEV-DHKLYRSMIRSLLYLTASRPDIAYAVG 150
           ++   G+   +   T +    K+   +   +  D   +RS++ +L YLT +RPDI+YAV 
Sbjct: 65  ILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 124

Query: 151 ICAQYQSDPRTSHLNVVKRIIKYVHGTTDFEILYSYDTSS-KLVGYCDAD 199
           I  Q   +P  +  +++KR+++YV GT  F  LY +  S   +  +CD+D
Sbjct: 125 IVCQRMHEPTLADFDLLKRVLRYVKGTI-FHGLYIHKNSKLNVQAFCDSD 171

[Close]

BLAST of Cmc08g0222161 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-06
Identity = 22/64 (34.38%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 135 LYLTASRPDIAYAVGICAQYQSDPRTSHLNVVKRIIKYVHGTTDFEILYSYDTSSKLVGY 194
           +YLT +RPD+ +AV   +Q+ S  RT+ +  V +++ YV GT    + YS  +  +L  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 195 CDAD 199
            D+D
Sbjct: 61  ADSD 64

The following BLAST results are available for this feature:

BLAST of Cmc08g0222161 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901806.1	8.7e-107	100.00	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]	[more]
TYK08856.1	1.5e-103	97.98	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0054435.1	6.5e-94	89.90	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK14601.1 gag-pol polyprotein [...	[more]
TYJ98295.1	1.2e-92	87.88	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0031683.1	3.6e-92	88.32	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04427.1 gag-pol polyprotein [...	[more]

BLAST of Cmc08g0222161 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	5.3e-22	30.46	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.8e-21	30.46	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	8.4e-20	29.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92519	1.1e-19	34.71	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P25600	4.5e-13	26.50	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc08g0222161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E0Q2	4.2e-107	100.00	uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5D3CER9	7.5e-104	97.98	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3CS19	3.1e-94	89.90	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G...	[more]
A0A5D3BIP9	5.9e-93	87.88	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G...	[more]
A0A5D3BY43	1.7e-92	88.32	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G...	[more]

BLAST of Cmc08g0222161 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	9.2e-22	32.46	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	7.8e-21	34.71	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.1e-06	34.38	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 3..104 e-value: 1.0E-15 score: 58.0
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 98..198
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 98..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0222161.1	Cmc08g0222161.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding