Cmc08g0222041 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0222041
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Integrase catalytic domain-containing protein
Location	CMiso1.1chr08: 10292249 .. 10292443 (+)
RNA-Seq Expression	Cmc08g0222041
Synteny	Cmc08g0222041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCATAGACTAGCCACAGAGCTTGGATACAGTTTCCCGATCGGAGATCCATGGATCACAAACGAGACCTCCCTATGGCCTTTCACCTTTGAAAGTGTCCTTCCTTCTCAATGCCCAAGCATCCATCCAATGCATTCTTTTCTATACAGTAGAGTAGATTGA

mRNA sequence

ATGTTTAAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCATAGACTAGCCACAGAGCTTGGATACAGTTTCCCGATCGGAGATCCATGGATCACAAACGAGACCTCCCTATGGCCTTTCACCTTTGAAAGTGTCCTTCCTTCTCAATGCCCAAGCATCCATCCAATGCATTCTTTTCTATACAGTAGAGTAGATTGA

Coding sequence (CDS)

ATGTTTAAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCATAGACTAGCCACAGAGCTTGGATACAGTTTCCCGATCGGAGATCCATGGATCACAAACGAGACCTCCCTATGGCCTTTCACCTTTGAAAGTGTCCTTCCTTCTCAATGCCCAAGCATCCATCCAATGCATTCTTTTCTATACAGTAGAGTAGATTGA

Protein sequence

MFKFAKFEKSKEHRLATELGYSFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSFLYSRVD

Homology

[Close]

BLAST of Cmc08g0222041 vs. NCBI nr
Match: KAA0062756.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK08830.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 5.3e-29
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MFKFAKFEKSKEHRLATELGYSFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSFLY 60
          MFKFAKFEKSKE RLATELGY FPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSFLY
Sbjct: 1  MFKFAKFEKSKERRLATELGYGFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSFLY 60

Query: 61 SRVD 65
          SRVD
Sbjct: 61 SRVD 64

[Close]

BLAST of Cmc08g0222041 vs. NCBI nr
Match: KAA0042455.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MFKFAKFEKSKEHRLATELGYSFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSFLY 60
          MF+FAKFEKSKE RLATELGY FPIGDPWIT+E S WPF  ESVLPSQCP IHPMHSFLY
Sbjct: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60

Query: 61 SRVD 65
          SRVD
Sbjct: 61 SRVD 64

[Close]

BLAST of Cmc08g0222041 vs. NCBI nr
Match: KAA0066844.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK27992.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1  MFKFAKFEKSKEHRLATELGYSFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSFLY 60
          MF+FAKFEKSKE RLATELGY FPIGDPWIT+E S WPF  ESVLPSQCP IHPMHSFLY
Sbjct: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of Cmc08g0222041 vs. NCBI nr
Match: RWR83731.1 (putative mitochondrial protein [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 114.8 bits (286), Expect = 2.8e-22
Identity = 52/64 (81.25%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1   MFKFAKFEKSKEHRLATELGYSFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSFLY 60
           MF+FAKFEKSKE RLATELGY FPIGDPWIT+  S WPF  ESVLPSQCP IHPMHSF Y
Sbjct: 45  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRY 104

Query: 61  SRVD 65
           S VD
Sbjct: 105 STVD 108

[Close]

BLAST of Cmc08g0222041 vs. NCBI nr
Match: GEX31234.1 (putative mitochondrial protein [Tanacetum cinerariifolium])

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MFKFAKFEKSKEHRLATELGYSFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSF 59
           MF+FAKFEKSKE RLATELGYSFPIGDPWIT+  SLWPF  ESVLPSQCPSIHPMHSF
Sbjct: 191 MFQFAKFEKSKERRLATELGYSFPIGDPWITDGISLWPFASESVLPSQCPSIHPMHSF 248

[Close]

BLAST of Cmc08g0222041 vs. ExPASy Swiss-Prot
Match: P93276 (Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana OX=3702 GN=AtMg00030 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-22
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1  MFKFAKFEKSKEHRLATELGYSFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSF 59
          MF+FAKF KSKE RLATELGY FPIGDPWIT+  S WPF  ESVLPSQCP IHPMHSF
Sbjct: 1  MFQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSF 58

[Close]

BLAST of Cmc08g0222041 vs. ExPASy TrEMBL
Match: A0A5D3CBW8 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00100 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.5e-29
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MFKFAKFEKSKEHRLATELGYSFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSFLY 60
          MFKFAKFEKSKE RLATELGY FPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSFLY
Sbjct: 1  MFKFAKFEKSKERRLATELGYGFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSFLY 60

Query: 61 SRVD 65
          SRVD
Sbjct: 61 SRVD 64

[Close]

BLAST of Cmc08g0222041 vs. ExPASy TrEMBL
Match: A0A5A7TLZ4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45606G00030 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.5e-25
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MFKFAKFEKSKEHRLATELGYSFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSFLY 60
          MF+FAKFEKSKE RLATELGY FPIGDPWIT+E S WPF  ESVLPSQCP IHPMHSFLY
Sbjct: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60

Query: 61 SRVD 65
          SRVD
Sbjct: 61 SRVD 64

[Close]

BLAST of Cmc08g0222041 vs. ExPASy TrEMBL
Match: A0A5D3DWU4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002030 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.9e-23
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1  MFKFAKFEKSKEHRLATELGYSFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSFLY 60
          MF+FAKFEKSKE RLATELGY FPIGDPWIT+E S WPF  ESVLPSQCP IHPMHSFLY
Sbjct: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of Cmc08g0222041 vs. ExPASy TrEMBL
Match: A0A443NZ14 (Putative mitochondrial protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01249300 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 52/64 (81.25%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1   MFKFAKFEKSKEHRLATELGYSFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSFLY 60
           MF+FAKFEKSKE RLATELGY FPIGDPWIT+  S WPF  ESVLPSQCP IHPMHSF Y
Sbjct: 45  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRY 104

Query: 61  SRVD 65
           S VD
Sbjct: 105 STVD 108

[Close]

BLAST of Cmc08g0222041 vs. ExPASy TrEMBL
Match: A0A2J6LS35 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_0X34941 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.7e-21
Identity = 49/58 (84.48%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1   MFKFAKFEKSKEHRLATELGYSFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSF 59
           MF+FAKFEKSKE RLATELGY FPIGDPWIT+  SLWPF  ESVLPSQCP IHPMHSF
Sbjct: 47  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISLWPFASESVLPSQCPCIHPMHSF 104

[Close]

BLAST of Cmc08g0222041 vs. TAIR 10
Match: ATMG00030.1 (hypothetical protein )

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-23
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1  MFKFAKFEKSKEHRLATELGYSFPIGDPWITNETSLWPFTFESVLPSQCPSIHPMHSF 59
          MF+FAKF KSKE RLATELGY FPIGDPWIT+  S WPF  ESVLPSQCP IHPMHSF
Sbjct: 1  MFQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSF 58

The following BLAST results are available for this feature:

BLAST of Cmc08g0222041 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062756.1	5.3e-29	96.88	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK08830.1 putative m...	[more]
KAA0042455.1	1.8e-24	85.94	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0066844.1	1.6e-22	85.25	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK27992.1 putative m...	[more]
RWR83731.1	2.8e-22	81.25	putative mitochondrial protein [Cinnamomum micranthum f. kanehirae]	[more]
GEX31234.1	1.1e-21	87.93	putative mitochondrial protein [Tanacetum cinerariifolium]	[more]

BLAST of Cmc08g0222041 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93276	2.9e-22	81.03	Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0222041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CBW8	2.5e-29	96.88	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TLZ4	8.5e-25	85.94	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DWU4	7.9e-23	85.25	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A443NZ14	1.4e-22	81.25	Putative mitochondrial protein OS=Cinnamomum micranthum f. kanehirae OX=337451 G...	[more]
A0A2J6LS35	5.7e-21	84.48	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_0X34941 PE=4 SV=1	[more]

BLAST of Cmc08g0222041 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00030.1	2.1e-23	81.03	hypothetical protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044987	Uncharacterized mitochondrial protein AtMg00030-like	PANTHER	PTHR37773	FAMILY NOT NAMED	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0222041.1	Cmc08g0222041.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003676	nucleic acid binding