Cmc08g0221951 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0221951
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 10118409 .. 10118909 (+)
RNA-Seq Expression	Cmc08g0221951
Synteny	Cmc08g0221951

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGTTTTAAATTTAAGGGAGGAGGGTCAAGGTTGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGAGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGAAGTATCCCTGTCATCAGAATCGGTGGTGAGGGACTATCCGGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCGCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTACAGGATGGCCCCCGCAGAGCTGAAAGAATTAAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTTCCCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTGTAG

mRNA sequence

ATGGCCAGTTTTAAATTTAAGGGAGGAGGGTCAAGGTTGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGAGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGAAGTATCCCTGTCATCAGAATCGGTGGTGAGGGACTATCCGGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCGCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTACAGGATGGCCCCCGCAGAGCTGAAAGAATTAAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTTCCCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTGTAG

Coding sequence (CDS)

ATGGCCAGTTTTAAATTTAAGGGAGGAGGGTCAAGGTTGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGAGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGAAGTATCCCTGTCATCAGAATCGGTGGTGAGGGACTATCCGGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCGCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTACAGGATGGCCCCCGCAGAGCTGAAAGAATTAAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTTCCCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTGTAG

Protein sequence

MASFKFKGGGSRLLPQVISAIRASKLLSQSTWGILASVVDTREVEVSLSSESVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVFPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL

Homology

[Close]

BLAST of Cmc08g0221951 vs. NCBI nr
Match: KAA0040188.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 321.6 bits (823), Expect = 3.9e-84
Identity = 161/166 (96.99%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MASFKFKGGGSRLLPQVISAIRASKLLSQSTWGILASVVDTREVEVSLSSESVVRDYPDV 60
           MASFKFKGGGSR LPQVISAIRASKLLSQ TWGILASVVDTREV+VSLSSE VVRDYPDV
Sbjct: 612 MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 671

Query: 61  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVF 120
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSV 
Sbjct: 672 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 731

Query: 121 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 167
           PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL
Sbjct: 732 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 777

[Close]

BLAST of Cmc08g0221951 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 321.6 bits (823), Expect = 3.9e-84
Identity = 161/166 (96.99%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1    MASFKFKGGGSRLLPQVISAIRASKLLSQSTWGILASVVDTREVEVSLSSESVVRDYPDV 60
            MASFKFKGGGSR LPQVISAIRASKLLSQ TWGILASVVDTREV+VSLSSE VVRDYPDV
Sbjct: 970  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 1029

Query: 61   FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVF 120
            FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSV 
Sbjct: 1030 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 1089

Query: 121  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 167
            PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL
Sbjct: 1090 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 1135

[Close]

BLAST of Cmc08g0221951 vs. NCBI nr
Match: KAA0056806.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 321.2 bits (822), Expect = 5.1e-84
Identity = 161/166 (96.99%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MASFKFKGGGSRLLPQVISAIRASKLLSQSTWGILASVVDTREVEVSLSSESVVRDYPDV 60
           MASFKFKGGGSR LPQVISAIRASKLLSQ TWGILASVVDTREV+VSLSSESVVRDYPDV
Sbjct: 516 MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSESVVRDYPDV 575

Query: 61  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVF 120
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSV 
Sbjct: 576 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 635

Query: 121 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 167
           PW APVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL
Sbjct: 636 PWSAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 681

[Close]

BLAST of Cmc08g0221951 vs. NCBI nr
Match: KAA0032356.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 321.2 bits (822), Expect = 5.1e-84
Identity = 160/166 (96.39%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MASFKFKGGGSRLLPQVISAIRASKLLSQSTWGILASVVDTREVEVSLSSESVVRDYPDV 60
           MASFKFKGGGSR LPQVISAIRASKLLSQ TWGILASVVDTREV+VSLSSE VVRDYPDV
Sbjct: 469 MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 528

Query: 61  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVF 120
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSV 
Sbjct: 529 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 588

Query: 121 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 167
           PWGAP+LFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL
Sbjct: 589 PWGAPILFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 634

[Close]

BLAST of Cmc08g0221951 vs. NCBI nr
Match: KAA0031931.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 320.5 bits (820), Expect = 8.7e-84
Identity = 160/166 (96.39%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1    MASFKFKGGGSRLLPQVISAIRASKLLSQSTWGILASVVDTREVEVSLSSESVVRDYPDV 60
            MASFKFKGGGSR LPQVISAIRASKLLSQ TWGILASVVDTREV+VSLSSE VVRDYPDV
Sbjct: 859  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 918

Query: 61   FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVF 120
            FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPS+ 
Sbjct: 919  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSMS 978

Query: 121  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 167
            PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL
Sbjct: 979  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 1024

[Close]

BLAST of Cmc08g0221951 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 88.6 bits (218), Expect = 7.3e-17
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 57  YPDVFPEELPGLPP---HREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKG 116
           Y ++   +LP  P    +  V+  IE++PG       PY +     +E+   +Q+LLD  
Sbjct: 564 YREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNK 623

Query: 117 FIRPSVFPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 167
           FI PS  P  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++
Sbjct: 624 FIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRI 676

[Close]

BLAST of Cmc08g0221951 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 7.3e-17
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 57  YPDVFPEELPGLPP---HREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKG 116
           Y ++   +LP  P    +  V+  IE++PG       PY +     +E+   +Q+LLD  
Sbjct: 590 YREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNK 649

Query: 117 FIRPSVFPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 167
           FI PS  P  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++
Sbjct: 650 FIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRI 702

[Close]

BLAST of Cmc08g0221951 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-14
Identity = 43/132 (32.58%), Postives = 72/132 (54.55%), Query Frame = 0


Query: 55  RDYPDVFPEELPGLPPHREVEFAIELEPGTV--------------PISRAPYRMAPAELK 114
           +++P++F  +L  +       FA+E EP TV              P+    YR   ++++
Sbjct: 269 KNFPELFKSQLENICSEYIDIFALESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVE 328

Query: 115 ELKVQLQELLDKGFIRPSVFPWGAPVLFVKKKDG------SMRLCIDYRELNKVTVKNRY 167
           E++ Q+Q+L+    + PSV  + +P+L V KK          RL IDYR++NK  + +++
Sbjct: 329 EIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKF 388

[Close]

BLAST of Cmc08g0221951 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 63  EELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVFPW 122
           E+LP   P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S    
Sbjct: 391 EKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAIN 450

Query: 123 GAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 167
             PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++
Sbjct: 451 ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKI 492

[Close]

BLAST of Cmc08g0221951 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 63  EELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVFPW 122
           E+LP   P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S    
Sbjct: 391 EKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAIN 450

Query: 123 GAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 167
             PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++
Sbjct: 451 ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKI 492

[Close]

BLAST of Cmc08g0221951 vs. ExPASy TrEMBL
Match: A0A5A7TB42 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00260 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.9e-84
Identity = 161/166 (96.99%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MASFKFKGGGSRLLPQVISAIRASKLLSQSTWGILASVVDTREVEVSLSSESVVRDYPDV 60
           MASFKFKGGGSR LPQVISAIRASKLLSQ TWGILASVVDTREV+VSLSSE VVRDYPDV
Sbjct: 612 MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 671

Query: 61  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVF 120
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSV 
Sbjct: 672 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 731

Query: 121 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 167
           PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL
Sbjct: 732 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 777

[Close]

BLAST of Cmc08g0221951 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.9e-84
Identity = 161/166 (96.99%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1    MASFKFKGGGSRLLPQVISAIRASKLLSQSTWGILASVVDTREVEVSLSSESVVRDYPDV 60
            MASFKFKGGGSR LPQVISAIRASKLLSQ TWGILASVVDTREV+VSLSSE VVRDYPDV
Sbjct: 970  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 1029

Query: 61   FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVF 120
            FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSV 
Sbjct: 1030 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 1089

Query: 121  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 167
            PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL
Sbjct: 1090 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 1135

[Close]

BLAST of Cmc08g0221951 vs. ExPASy TrEMBL
Match: A0A5A7SQP5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002220 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.5e-84
Identity = 160/166 (96.39%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MASFKFKGGGSRLLPQVISAIRASKLLSQSTWGILASVVDTREVEVSLSSESVVRDYPDV 60
           MASFKFKGGGSR LPQVISAIRASKLLSQ TWGILASVVDTREV+VSLSSE VVRDYPDV
Sbjct: 469 MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 528

Query: 61  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVF 120
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSV 
Sbjct: 529 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 588

Query: 121 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 167
           PWGAP+LFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL
Sbjct: 589 PWGAPILFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 634

[Close]

BLAST of Cmc08g0221951 vs. ExPASy TrEMBL
Match: A0A5A7UR62 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G001070 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.5e-84
Identity = 161/166 (96.99%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MASFKFKGGGSRLLPQVISAIRASKLLSQSTWGILASVVDTREVEVSLSSESVVRDYPDV 60
           MASFKFKGGGSR LPQVISAIRASKLLSQ TWGILASVVDTREV+VSLSSESVVRDYPDV
Sbjct: 516 MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSESVVRDYPDV 575

Query: 61  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVF 120
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSV 
Sbjct: 576 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 635

Query: 121 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 167
           PW APVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL
Sbjct: 636 PWSAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 681

[Close]

BLAST of Cmc08g0221951 vs. ExPASy TrEMBL
Match: A0A5A7SQU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00040 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.2e-84
Identity = 160/166 (96.39%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1    MASFKFKGGGSRLLPQVISAIRASKLLSQSTWGILASVVDTREVEVSLSSESVVRDYPDV 60
            MASFKFKGGGSR LPQVISAIRASKLLSQ TWGILASVVDTREV+VSLSSE VVRDYPDV
Sbjct: 859  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 918

Query: 61   FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVF 120
            FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPS+ 
Sbjct: 919  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSMS 978

Query: 121  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 167
            PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL
Sbjct: 979  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQL 1024

The following BLAST results are available for this feature:

BLAST of Cmc08g0221951 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040188.1	3.9e-84	96.99	pol protein [Cucumis melo var. makuwa]	[more]
KAA0047433.1	3.9e-84	96.99	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056806.1	5.1e-84	96.99	pol protein [Cucumis melo var. makuwa]	[more]
KAA0032356.1	5.1e-84	96.39	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0031931.1	8.7e-84	96.39	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0221951 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	7.3e-17	39.82	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	7.3e-17	39.82	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P10394	5.8e-14	32.58	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
Q9UR07	1.3e-10	33.65	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.3e-10	33.65	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc08g0221951 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TB42	1.9e-84	96.99	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5A7TV57	1.9e-84	96.99	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SQP5	2.5e-84	96.39	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UR62	2.5e-84	96.99	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48...	[more]
A0A5A7SQU8	4.2e-84	96.39	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of Cmc08g0221951 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 75..153 e-value: 9.0E-36 score: 125.1
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 3..147
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 3..147
None	No IPR available	CDD	cd01647	RT_LTR	coord: 113..166 e-value: 2.78488E-27 score: 98.8217
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 154..166 e-value: 9.0E-36 score: 125.1
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 53..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0221951.1	Cmc08g0221951.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding