Cmc08g0221811 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0221811
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 9879967 .. 9880626 (-)
RNA-Seq Expression	Cmc08g0221811
Synteny	Cmc08g0221811

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCAGGGTAAGGTGGTCGCTTATGCGTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATCTAGAGTTGGCAGCAGTGGTTTTTGCTTTGAAAATATGGAGGCATTATTTATATGGTGAAAAGATACAGATATTCACAGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAAGAATTGAATATGAGACAGCGAAGGTGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCGGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGGAAGGTGTCCCATTCAGCAGCACTTATTACCCGGCAGGCCCCATTGCATCGGGATCTCGAGCGGGCTGGGATTGCAGTGTCAGTGGGGGCAGTTACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACCTTGAGGCAGAGGATCATTGATGCTCAGAGTAATGATCCTTATCTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAACGGCTGAGTTCTCGTTATCCTCTGATGGTGGACTGTTGTTTGAGAGACGCCTCTGTGTTCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCGCACAGTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACTTAA

mRNA sequence

ATGCAGCAGGGTAAGGTGGTCGCTTATGCGTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATCTAGAGTTGGCAGCAGTGGTTTTTGCTTTGAAAATATGGAGGCATTATTTATATGGTGAAAAGATACAGATATTCACAGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAAGAATTGAATATGAGACAGCGAAGGTGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCGGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGGAAGGTGTCCCATTCAGCAGCACTTATTACCCGGCAGGCCCCATTGCATCGGGATCTCGAGCGGGCTGGGATTGCAGTGTCAGTGGGGGCAGTTACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACCTTGAGGCAGAGGATCATTGATGCTCAGAGTAATGATCCTTATCTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAACGGCTGAGTTCTCGTTATCCTCTGATGGTGGACTGTTGTTTGAGAGACGCCTCTGTGTTCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCGCACAGTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACTTAA

Coding sequence (CDS)

ATGCAGCAGGGTAAGGTGGTCGCTTATGCGTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATCTAGAGTTGGCAGCAGTGGTTTTTGCTTTGAAAATATGGAGGCATTATTTATATGGTGAAAAGATACAGATATTCACAGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAAGAATTGAATATGAGACAGCGAAGGTGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCGGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGGAAGGTGTCCCATTCAGCAGCACTTATTACCCGGCAGGCCCCATTGCATCGGGATCTCGAGCGGGCTGGGATTGCAGTGTCAGTGGGGGCAGTTACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACCTTGAGGCAGAGGATCATTGATGCTCAGAGTAATGATCCTTATCTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAACGGCTGAGTTCTCGTTATCCTCTGATGGTGGACTGTTGTTTGAGAGACGCCTCTGTGTTCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCGCACAGTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACTTAA

Protein sequence

MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAGIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSPHFPCTQVVRRCIRT

Homology

[Close]

BLAST of Cmc08g0221811 vs. NCBI nr
Match: KAA0067622.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 413.3 bits (1061), Expect = 1.3e-111
Identity = 208/212 (98.11%), Postives = 209/212 (98.58%), Query Frame = 0


Query: 1   MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 60
           MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Sbjct: 669 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 728

Query: 61  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 120
           TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 729 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 788

Query: 121 AGIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 180
           A IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQ AEFSLSSDGGL
Sbjct: 789 AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAAEFSLSSDGGL 848

Query: 181 LFERRLCVPSDSAVKTELLSEAHSPHFPCTQV 213
           LFERRLCVPSDSAVKTELL+EAHS HFPCTQV
Sbjct: 849 LFERRLCVPSDSAVKTELLAEAHSSHFPCTQV 880

[Close]

BLAST of Cmc08g0221811 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 401.4 bits (1030), Expect = 5.1e-108
Identity = 204/207 (98.55%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1    MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 60
            MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Sbjct: 1138 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 1197

Query: 61   TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 120
            TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 1198 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 1257

Query: 121  AGIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 180
            A IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL
Sbjct: 1258 AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 1317

Query: 181  LFERRLCVPSDSAVKTELLSEAHSPHF 208
            LFERRLCVPSDSAVKTELLSEAHS  F
Sbjct: 1318 LFERRLCVPSDSAVKTELLSEAHSSPF 1344

[Close]

BLAST of Cmc08g0221811 vs. NCBI nr
Match: KAA0051368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 401.4 bits (1030), Expect = 5.1e-108
Identity = 204/207 (98.55%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1    MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 60
            MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Sbjct: 831  MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 890

Query: 61   TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 120
            TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 891  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 950

Query: 121  AGIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 180
            A IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL
Sbjct: 951  AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 1010

Query: 181  LFERRLCVPSDSAVKTELLSEAHSPHF 208
            LFERRLCVPSDSAVKTELLSEAHS  F
Sbjct: 1011 LFERRLCVPSDSAVKTELLSEAHSSPF 1037

[Close]

BLAST of Cmc08g0221811 vs. NCBI nr
Match: KAA0053280.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 399.4 bits (1025), Expect = 1.9e-107
Identity = 202/207 (97.58%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 1   MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 60
           MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Sbjct: 141 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 200

Query: 61  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 120
           TQKELNMRQRRWLEL KDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 201 TQKELNMRQRRWLELAKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 260

Query: 121 AGIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 180
           A IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL
Sbjct: 261 AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 320

Query: 181 LFERRLCVPSDSAVKTELLSEAHSPHF 208
           LFERRLC+PSDSAVKTELLSEAHS  F
Sbjct: 321 LFERRLCIPSDSAVKTELLSEAHSSPF 347

[Close]

BLAST of Cmc08g0221811 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 399.1 bits (1024), Expect = 2.5e-107
Identity = 203/207 (98.07%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 1   MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 60
           MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Sbjct: 305 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 364

Query: 61  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 120
           TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 365 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 424

Query: 121 AGIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 180
           A IAV VGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL
Sbjct: 425 AEIAVLVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 484

Query: 181 LFERRLCVPSDSAVKTELLSEAHSPHF 208
           LFERRLCVPSDSAVKTELLSEAHS  F
Sbjct: 485 LFERRLCVPSDSAVKTELLSEAHSSPF 511

[Close]

BLAST of Cmc08g0221811 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-17
Identity = 41/94 (43.62%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 7   VAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE-KIQIFTDHKSLKYFFTQKEL 66
           +AY SR L   E+NY T + E+ A++++L   R YLYG   I+++TDH+ L +    +  
Sbjct: 461 IAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNF 520

Query: 67  NMRQRRWLELVKDYDCEILYHPGKANVVADALSR 100
           N + +RW   +++Y+CE++Y PGK+NVVADALSR
Sbjct: 521 NAKLKRWKARIEEYNCELIYKPGKSNVVADALSR 554

[Close]

BLAST of Cmc08g0221811 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-16
Identity = 43/98 (43.88%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 2   QQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFT 61
           Q G  ++Y SR L  HE NY T + EL A+V+A K +RHYL G   +I +DH+ L + + 
Sbjct: 526 QDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYR 585

Query: 62  QKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR 100
            K+ N +  RW   + ++D +I Y  GK N VADALSR
Sbjct: 586 MKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623

[Close]

BLAST of Cmc08g0221811 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.8e-16
Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 0


Query: 2   QQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEK-IQIFTDHKSLKYFF 61
           Q+G+ +   SR LK  EQNY T++ EL A+V+AL   +++LYG + I IFTDH+ L +  
Sbjct: 512 QEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAV 571

Query: 62  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK 101
             +  N + +RW   +  ++ ++ Y PGK N VADALSR+
Sbjct: 572 ADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQ 611

[Close]

BLAST of Cmc08g0221811 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-14
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 2   QQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFT 61
           Q G  +++ SR L  HE NY   + EL A+V+A K +RHYL G +  I +DH+ L++   
Sbjct: 525 QNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHN 584

Query: 62  QKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR 100
            KE   +  RW   + +Y  +I Y  GK N VADALSR
Sbjct: 585 LKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622

[Close]

BLAST of Cmc08g0221811 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-14
Identity = 56/203 (27.59%), Postives = 98/203 (48.28%), Query Frame = 0


Query: 7   VAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE 66
           V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T + 
Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794

Query: 67  --LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAG 126
              N R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   
Sbjct: 795 EPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNS 854

Query: 127 IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLF 186
           I          + Q+++    + +++   +ND  L+    L    +  E ++    GLL 
Sbjct: 855 INF--------VNQISITDDFKNQVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLI 914

Query: 187 ERR--LCVPSDSAVKTELLSEAH 204
             +  + +P+D+ +   ++ + H
Sbjct: 915 NSKDQILLPNDTQLTRTIIKKYH 920

[Close]

BLAST of Cmc08g0221811 vs. ExPASy TrEMBL
Match: A0A5A7VGW8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00940 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.3e-112
Identity = 208/212 (98.11%), Postives = 209/212 (98.58%), Query Frame = 0


Query: 1   MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 60
           MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Sbjct: 669 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 728

Query: 61  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 120
           TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 729 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 788

Query: 121 AGIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 180
           A IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQ AEFSLSSDGGL
Sbjct: 789 AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAAEFSLSSDGGL 848

Query: 181 LFERRLCVPSDSAVKTELLSEAHSPHFPCTQV 213
           LFERRLCVPSDSAVKTELL+EAHS HFPCTQV
Sbjct: 849 LFERRLCVPSDSAVKTELLAEAHSSHFPCTQV 880

[Close]

BLAST of Cmc08g0221811 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.5e-108
Identity = 204/207 (98.55%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1    MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 60
            MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Sbjct: 1138 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 1197

Query: 61   TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 120
            TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 1198 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 1257

Query: 121  AGIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 180
            A IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL
Sbjct: 1258 AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 1317

Query: 181  LFERRLCVPSDSAVKTELLSEAHSPHF 208
            LFERRLCVPSDSAVKTELLSEAHS  F
Sbjct: 1318 LFERRLCVPSDSAVKTELLSEAHSSPF 1344

[Close]

BLAST of Cmc08g0221811 vs. ExPASy TrEMBL
Match: A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.5e-108
Identity = 204/207 (98.55%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1    MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 60
            MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Sbjct: 831  MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 890

Query: 61   TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 120
            TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 891  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 950

Query: 121  AGIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 180
            A IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL
Sbjct: 951  AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 1010

Query: 181  LFERRLCVPSDSAVKTELLSEAHSPHF 208
            LFERRLCVPSDSAVKTELLSEAHS  F
Sbjct: 1011 LFERRLCVPSDSAVKTELLSEAHSSPF 1037

[Close]

BLAST of Cmc08g0221811 vs. ExPASy TrEMBL
Match: A0A5A7UDJ5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00830 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 9.4e-108
Identity = 202/207 (97.58%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 1   MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 60
           MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Sbjct: 141 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 200

Query: 61  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 120
           TQKELNMRQRRWLEL KDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 201 TQKELNMRQRRWLELAKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 260

Query: 121 AGIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 180
           A IAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL
Sbjct: 261 AEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 320

Query: 181 LFERRLCVPSDSAVKTELLSEAHSPHF 208
           LFERRLC+PSDSAVKTELLSEAHS  F
Sbjct: 321 LFERRLCIPSDSAVKTELLSEAHSSPF 347

[Close]

BLAST of Cmc08g0221811 vs. ExPASy TrEMBL
Match: Q84KB0 (Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.2e-107
Identity = 203/207 (98.07%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 1   MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 60
           MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Sbjct: 305 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 364

Query: 61  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 120
           TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER
Sbjct: 365 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLER 424

Query: 121 AGIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 180
           A IAV VGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL
Sbjct: 425 AEIAVLVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGL 484

Query: 181 LFERRLCVPSDSAVKTELLSEAHSPHF 208
           LFERRLCVPSDSAVKTELLSEAHS  F
Sbjct: 485 LFERRLCVPSDSAVKTELLSEAHSSPF 511

The following BLAST results are available for this feature:

BLAST of Cmc08g0221811 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067622.1	1.3e-111	98.11	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK01613.1	5.1e-108	98.55	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051368.1	5.1e-108	98.55	pol protein [Cucumis melo var. makuwa]	[more]
KAA0053280.1	1.9e-107	97.58	pol protein [Cucumis melo var. makuwa]	[more]
AAO45752.1	2.5e-107	98.07	pol protein [Cucumis melo subsp. melo]	[more]

BLAST of Cmc08g0221811 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8I7P9	1.9e-17	43.62	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P04323	2.1e-16	43.88	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P10401	2.8e-16	42.00	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P20825	3.4e-14	41.84	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q9UR07	3.4e-14	27.59	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc08g0221811 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGW8	6.3e-112	98.11	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48...	[more]
A0A5D3BPI1	2.5e-108	98.55	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7U7V9	2.5e-108	98.55	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UDJ5	9.4e-108	97.58	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00830 PE...	[more]
Q84KB0	1.2e-107	98.07	Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Cmc08g0221811 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 5..79 e-value: 2.4E-27 score: 95.3
None	No IPR available	GENE3D	3.10.20.370		coord: 2..50 e-value: 2.9E-6 score: 29.1
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 1..100
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..100
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 2..101 e-value: 4.68504E-54 score: 167.284
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0221811.1	Cmc08g0221811.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding