Cmc08g0221801 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0221801
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 9874822 .. 9875361 (+)
RNA-Seq Expression	Cmc08g0221801
Synteny	Cmc08g0221801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAATATAGGACTGATGTCATATTATGTTGACATTGAGGTGAAGCAGTCAGAGGAAGATATTTTCATCTCTCAAGAACGATATACTATAGAAATTCTAAAGAAGTTCAATATGATCAATTCTAGGTCTGTCACAACTCCAATTGAAACTAAGACCAAACTGTCCAAATATGAAGAAGGAGATGATGTTGATCCTTCATATTCCAAAAGTTTGGTTGGGAGATGTTTAACTTGCTCACGACCAGATATTCTTTTCAACATTGGATTGGTGAGTCGATTTATAGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTCAAAGGTACGCTTGACTATGGGTTACTTTATTCTTCATCTAAAGAATTCAAGCTTGAAGGTTATTGTGATAGTGATTGGGCTGGAGATACTAATGATCAAAAGAGCACTAGTGGATATGTTTTCTTTGTTGGTAATATTGCATTTACTTGGAGTTCTAAGAAGCAACCTATTGTGACATTATCCACTTGTCAAGCACAATAA

mRNA sequence

ATGACAAATATAGGACTGATGTCATATTATGTTGACATTGAGGTGAAGCAGTCAGAGGAAGATATTTTCATCTCTCAAGAACGATATACTATAGAAATTCTAAAGAAGTTCAATATGATCAATTCTAGGTCTGTCACAACTCCAATTGAAACTAAGACCAAACTGTCCAAATATGAAGAAGGAGATGATGTTGATCCTTCATATTCCAAAAGTTTGGTTGGGAGATGTTTAACTTGCTCACGACCAGATATTCTTTTCAACATTGGATTGGTGAGTCGATTTATAGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTCAAAGGTACGCTTGACTATGGGTTACTTTATTCTTCATCTAAAGAATTCAAGCTTGAAGGTTATTGTGATAGTGATTGGGCTGGAGATACTAATGATCAAAAGAGCACTAGTGGATATGTTTTCTTTGTTGGTAATATTGCATTTACTTGGAGTTCTAAGAAGCAACCTATTGTGACATTATCCACTTGTCAAGCACAATAA

Coding sequence (CDS)

ATGACAAATATAGGACTGATGTCATATTATGTTGACATTGAGGTGAAGCAGTCAGAGGAAGATATTTTCATCTCTCAAGAACGATATACTATAGAAATTCTAAAGAAGTTCAATATGATCAATTCTAGGTCTGTCACAACTCCAATTGAAACTAAGACCAAACTGTCCAAATATGAAGAAGGAGATGATGTTGATCCTTCATATTCCAAAAGTTTGGTTGGGAGATGTTTAACTTGCTCACGACCAGATATTCTTTTCAACATTGGATTGGTGAGTCGATTTATAGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTCAAAGGTACGCTTGACTATGGGTTACTTTATTCTTCATCTAAAGAATTCAAGCTTGAAGGTTATTGTGATAGTGATTGGGCTGGAGATACTAATGATCAAAAGAGCACTAGTGGATATGTTTTCTTTGTTGGTAATATTGCATTTACTTGGAGTTCTAAGAAGCAACCTATTGTGACATTATCCACTTGTCAAGCACAATAA

Protein sequence

MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEEGDDVDPSYSKSLVGRCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLDYGLLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQAQ

Homology

[Close]

BLAST of Cmc08g0221801 vs. NCBI nr
Match: XP_016902157.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo])

HSP 1 Score: 359.8 bits (922), Expect = 1.4e-95
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60
           MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE
Sbjct: 1   MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60

Query: 61  GDDVDPSYSKSLVGRCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLDYG 120
           GDDVDPSYSKSLVGRCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLDYG
Sbjct: 61  GDDVDPSYSKSLVGRCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLDYG 120

Query: 121 LLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQAQ 180
           LLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQAQ
Sbjct: 121 LLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQAQ 179

[Close]

BLAST of Cmc08g0221801 vs. NCBI nr
Match: TYK13925.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 312.0 bits (798), Expect = 3.3e-81
Identity = 154/181 (85.08%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1    MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60
            MT+IGLMSYY+ IEVKQSEE IFISQERYT +IL+KFNM+NS+SV TPIET TKLSK+EE
Sbjct: 1047 MTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILEKFNMMNSKSVATPIETGTKLSKHEE 1106

Query: 61   GDDVDPSYSKSLVG--RCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLD 120
            GDDVDPSY KSLVG  R LTC+RPDILF++GLVSRF+ESPTTTHLKVAKRILRYL+GTLD
Sbjct: 1107 GDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLD 1166

Query: 121  YGLLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQA 180
            YGL YSSSKEFKLEGYCDSDWAGDTND+KSTSGYVFF+GN AFTWSSKKQPIVTLSTC+A
Sbjct: 1167 YGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEA 1226

[Close]

BLAST of Cmc08g0221801 vs. NCBI nr
Match: KAA0033083.1 (copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.0 bits (798), Expect = 3.3e-81
Identity = 154/181 (85.08%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1    MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60
            MT+IGLMSYY+ IEVKQSEE IFISQERYT +IL+KFNM+NS+SV TPIET TKLSK+EE
Sbjct: 877  MTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILEKFNMMNSKSVATPIETGTKLSKHEE 936

Query: 61   GDDVDPSYSKSLVG--RCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLD 120
            GDDVDPSY KSLVG  R LTC+RPDILF++GLVSRF+ESPTTTHLKVAKRILRYL+GTLD
Sbjct: 937  GDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLD 996

Query: 121  YGLLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQA 180
            YGL YSSSKEFKLEGYCDSDWAGDTND+KSTSGYVFF+GN AFTWSSKKQPIVTLSTC+A
Sbjct: 997  YGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEA 1056

[Close]

BLAST of Cmc08g0221801 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 311.2 bits (796), Expect = 5.7e-81
Identity = 154/181 (85.08%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 1    MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60
            MT+IGLMSYY+ IEVKQSEE IFISQERYT EIL+KFNM+NS+ V TPIET TKLSK+EE
Sbjct: 1047 MTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEE 1106

Query: 61   GDDVDPSYSKSLVG--RCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLD 120
            GDDVDPSY KSLVG  R LTC+RPDILF++GLVSRF+ESPTTTHLKVAKRILRYL+GTLD
Sbjct: 1107 GDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLD 1166

Query: 121  YGLLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQA 180
            YGL YSSSKEFKLEGYCDSDWAGDTND+KSTSGYVFF+GN AFTWSSKKQPIVTLSTC+A
Sbjct: 1167 YGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEA 1226

[Close]

BLAST of Cmc08g0221801 vs. NCBI nr
Match: KAA0047979.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 311.2 bits (796), Expect = 5.7e-81
Identity = 154/181 (85.08%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 1    MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60
            MT+IGLMSYY+ IEVKQSEE IFISQERYT EIL+KFNM+NS+ V TPIET TKLSK+EE
Sbjct: 1047 MTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEE 1106

Query: 61   GDDVDPSYSKSLVG--RCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLD 120
            GDDVDPSY KSLVG  R LTC+RPDILF++GLVSRF+ESPTTTHLKVAKRILRYL+GTLD
Sbjct: 1107 GDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLD 1166

Query: 121  YGLLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQA 180
            YGL YSSSKEFKLEGYCDSDWAGDTND+KSTSGYVFF+GN AFTWSSKKQPIVTLSTC+A
Sbjct: 1167 YGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEA 1226

[Close]

BLAST of Cmc08g0221801 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.6e-31
Identity = 68/175 (38.86%), Postives = 106/175 (60.57%), Query Frame = 0


Query: 7    MSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEEGDDVDP 66
            + Y++ IE K+    + +SQ RY +++L + NMI ++ VTTP+    KLS Y      DP
Sbjct: 1183 LHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDP 1242

Query: 67   SYSKSLVG--RCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLDYGLLYS 126
            +  + +VG  + L  +RPDI + +  +S+F+  PT  HL+  KRILRYL GT ++G+   
Sbjct: 1243 TEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLK 1302

Query: 127  SSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQAQ 180
                  L  Y D+DWAGD +D  ST+GY+ ++G+   +WSSKKQ  V  S+ +A+
Sbjct: 1303 KGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAE 1357

[Close]

BLAST of Cmc08g0221801 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30
Identity = 64/175 (36.57%), Postives = 107/175 (61.14%), Query Frame = 0


Query: 7    MSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEEGDDVDP 66
            + Y++ IE K+  + + +SQ RYT+++L + NM+ ++ V TP+ T  KL+ +      DP
Sbjct: 1166 LHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDP 1225

Query: 67   SYSKSLVG--RCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLDYGLLYS 126
            +  + +VG  + L  +RPD+ + +  +S+++  PT  H    KR+LRYL GT D+G+   
Sbjct: 1226 TEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLK 1285

Query: 127  SSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQAQ 180
                  L  Y D+DWAGDT+D  ST+GY+ ++G+   +WSSKKQ  V  S+ +A+
Sbjct: 1286 KGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAE 1340

[Close]

BLAST of Cmc08g0221801 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-27
Identity = 61/181 (33.70%), Postives = 110/181 (60.77%), Query Frame = 0


Query: 1   MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60
           M ++G + Y++ I++K     +F+SQ +Y  +IL    M++ + ++TP+  K   S    
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN-SSVST 92

Query: 61  GDDVDPSYSKSLVG--RCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLD 120
               DPS  +S+VG  + LT +RPDI + + +V + +  PT     + KR+LRY+KGT+ 
Sbjct: 93  AKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIF 152

Query: 121 YGLLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQA 180
           +GL    + +  ++ +CDSDWAG T+ ++ST+G+  F+G    +WS+K+QP V+ S+ + 
Sbjct: 153 HGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTET 212

[Close]

BLAST of Cmc08g0221801 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.3e-26
Identity = 69/174 (39.66%), Postives = 105/174 (60.34%), Query Frame = 0


Query: 16   KQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSK-------YEEGDDVDPSY 75
            +++   +++SQE+Y   +L++FNM N++ V+TP+    KLSK        E+G+     Y
Sbjct: 1052 ERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPY 1111

Query: 76   SKSLVGR---CLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLDYGLLYSS 135
            S S VG     + C+RPDI   +G+VSRF+E+P   H +  K ILRYL+GT    L +  
Sbjct: 1112 S-SAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG 1171

Query: 136  SKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQAQ 180
            S    L+GY D+D AGD +++KS++GY+F     A +W SK Q  V LST +A+
Sbjct: 1172 SDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAE 1223

[Close]

BLAST of Cmc08g0221801 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-25
Identity = 65/186 (34.95%), Postives = 111/186 (59.68%), Query Frame = 0


Query: 1    MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60
            MT++  + +++ I ++  E+ I++SQ  Y  +IL KFNM N  +V+TP+ +K        
Sbjct: 1114 MTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNS 1173

Query: 61   GDDVDPSYSKSLVGRCL----TCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGT 120
             +D + +  +SL+G CL     C+RPD+   + ++SR+     +   +  KR+LRYLKGT
Sbjct: 1174 DEDCN-TPCRSLIG-CLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGT 1233

Query: 121  LDYGLLYSSSKEF--KLEGYCDSDWAGDTNDQKSTSGYVFFVGNI-AFTWSSKKQPIVTL 180
            +D  L++  +  F  K+ GY DSDWAG   D+KST+GY+F + +     W++K+Q  V  
Sbjct: 1234 IDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAA 1293

[Close]

BLAST of Cmc08g0221801 vs. ExPASy TrEMBL
Match: A0A1S4E1Q6 (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107991557 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 6.8e-96
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60
           MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE
Sbjct: 1   MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60

Query: 61  GDDVDPSYSKSLVGRCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLDYG 120
           GDDVDPSYSKSLVGRCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLDYG
Sbjct: 61  GDDVDPSYSKSLVGRCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLDYG 120

Query: 121 LLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQAQ 180
           LLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQAQ
Sbjct: 121 LLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQAQ 179

[Close]

BLAST of Cmc08g0221801 vs. ExPASy TrEMBL
Match: A0A5A7SRM0 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G002060 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.6e-81
Identity = 154/181 (85.08%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1    MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60
            MT+IGLMSYY+ IEVKQSEE IFISQERYT +IL+KFNM+NS+SV TPIET TKLSK+EE
Sbjct: 877  MTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILEKFNMMNSKSVATPIETGTKLSKHEE 936

Query: 61   GDDVDPSYSKSLVG--RCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLD 120
            GDDVDPSY KSLVG  R LTC+RPDILF++GLVSRF+ESPTTTHLKVAKRILRYL+GTLD
Sbjct: 937  GDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLD 996

Query: 121  YGLLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQA 180
            YGL YSSSKEFKLEGYCDSDWAGDTND+KSTSGYVFF+GN AFTWSSKKQPIVTLSTC+A
Sbjct: 997  YGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEA 1056

[Close]

BLAST of Cmc08g0221801 vs. ExPASy TrEMBL
Match: A0A5D3CQU3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001240 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.6e-81
Identity = 154/181 (85.08%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1    MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60
            MT+IGLMSYY+ IEVKQSEE IFISQERYT +IL+KFNM+NS+SV TPIET TKLSK+EE
Sbjct: 1047 MTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILEKFNMMNSKSVATPIETGTKLSKHEE 1106

Query: 61   GDDVDPSYSKSLVG--RCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLD 120
            GDDVDPSY KSLVG  R LTC+RPDILF++GLVSRF+ESPTTTHLKVAKRILRYL+GTLD
Sbjct: 1107 GDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLD 1166

Query: 121  YGLLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQA 180
            YGL YSSSKEFKLEGYCDSDWAGDTND+KSTSGYVFF+GN AFTWSSKKQPIVTLSTC+A
Sbjct: 1167 YGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEA 1226

[Close]

BLAST of Cmc08g0221801 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.8e-81
Identity = 154/181 (85.08%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 1    MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60
            MT+IGLMSYY+ IEVKQSEE IFISQERYT EIL+KFNM+NS+ V TPIET TKLSK+EE
Sbjct: 1047 MTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEE 1106

Query: 61   GDDVDPSYSKSLVG--RCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLD 120
            GDDVDPSY KSLVG  R LTC+RPDILF++GLVSRF+ESPTTTHLKVAKRILRYL+GTLD
Sbjct: 1107 GDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLD 1166

Query: 121  YGLLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQA 180
            YGL YSSSKEFKLEGYCDSDWAGDTND+KSTSGYVFF+GN AFTWSSKKQPIVTLSTC+A
Sbjct: 1167 YGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEA 1226

[Close]

BLAST of Cmc08g0221801 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.8e-81
Identity = 154/181 (85.08%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 1    MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60
            MT+IGLMSYY+ IEVKQSEE IFISQERYT EIL+KFNM+NS+ V TPIET TKLSK+EE
Sbjct: 1047 MTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEE 1106

Query: 61   GDDVDPSYSKSLVG--RCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLD 120
            GDDVDPSY KSLVG  R LTC+RPDILF++GLVSRF+ESPTTTHLKVAKRILRYL+GTLD
Sbjct: 1107 GDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLD 1166

Query: 121  YGLLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQA 180
            YGL YSSSKEFKLEGYCDSDWAGDTND+KSTSGYVFF+GN AFTWSSKKQPIVTLSTC+A
Sbjct: 1167 YGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEA 1226

[Close]

BLAST of Cmc08g0221801 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-28
Identity = 61/181 (33.70%), Postives = 110/181 (60.77%), Query Frame = 0


Query: 1   MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60
           M ++G + Y++ I++K     +F+SQ +Y  +IL    M++ + ++TP+  K   S    
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN-SSVST 92

Query: 61  GDDVDPSYSKSLVG--RCLTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLD 120
               DPS  +S+VG  + LT +RPDI + + +V + +  PT     + KR+LRY+KGT+ 
Sbjct: 93  AKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIF 152

Query: 121 YGLLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQA 180
           +GL    + +  ++ +CDSDWAG T+ ++ST+G+  F+G    +WS+K+QP V+ S+ + 
Sbjct: 153 HGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTET 212

[Close]

BLAST of Cmc08g0221801 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 114.4 bits (285), Expect = 9.5e-26
Identity = 56/181 (30.94%), Postives = 104/181 (57.46%), Query Frame = 0


Query: 1   MTNIGLMSYYVDIEVKQSEEDIFISQERYTIEILKKFNMINSRSVTTPIETKTKLSKYEE 60
           + ++G + Y++ +E+ +S   I I Q +Y +++L +  ++  +  + P++     S +  
Sbjct: 310 LRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG 369

Query: 61  GDDVDPSYSKSLVGRC--LTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLD 120
           GD VD    + L+GR   L  +R DI F +  +S+F E+P   H +   +IL Y+KGT+ 
Sbjct: 370 GDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVG 429

Query: 121 YGLLYSSSKEFKLEGYCDSDWAGDTNDQKSTSGYVFFVGNIAFTWSSKKQPIVTLSTCQA 180
            GL YSS  E +L+ + D+ +    + ++ST+GY  F+G    +W SKKQ +V+ S+ +A
Sbjct: 430 QGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEA 489

[Close]

BLAST of Cmc08g0221801 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-11
Identity = 27/80 (33.75%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 77  LTCSRPDILFNIGLVSRFIESPTTTHLKVAKRILRYLKGTLDYGLLYSSSKEFKLEGYCD 136
           LT +RPD+ F +  +S+F  +  T  ++   ++L Y+KGT+  GL YS++ + +L+ + D
Sbjct: 3   LTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFAD 62

Query: 137 SDWAGDTNDQKSTSGYVFFV 157
           SDWA   + ++S +G+   V
Sbjct: 63  SDWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Cmc08g0221801 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902157.1	1.4e-95	100.00	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]	[more]
TYK13925.1	3.3e-81	85.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0033083.1	3.3e-81	85.08	copia protein [Cucumis melo var. makuwa]	[more]
TYK18362.1	5.7e-81	85.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047979.1	5.7e-81	85.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc08g0221801 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	5.6e-31	38.86	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.6e-30	36.57	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92519	1.7e-27	33.70	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10978	9.3e-26	39.66	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.7e-25	34.95	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc08g0221801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E1Q6	6.8e-96	100.00	uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7SRM0	1.6e-81	85.08	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G002060...	[more]
A0A5D3CQU3	1.6e-81	85.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V3X9	2.8e-81	85.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	2.8e-81	85.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc08g0221801 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	1.2e-28	33.70	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	9.5e-26	30.94	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	3.0e-11	33.75	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 46..156
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 46..156
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 132..178 e-value: 4.93278E-23 score: 87.1385

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0221801.1	Cmc08g0221801.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding