Cmc08g0221681 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0221681
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr08: 9564975 .. 9565691 (-)
RNA-Seq Expression	Cmc08g0221681
Synteny	Cmc08g0221681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGATCCTGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTGATACTTCAAACCTAAGATGCGAATTAGAACTTAGGAGAAGTAAAAGAAAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACCTTCATAGTGGAAAGACGTGATGAAATTGACTGTAACTTCACAAACTTGTACTTAATAGAAGAGGATCCTAAAACTTACCAAGAAGCGCTAAACTCTGTAGATTCAAGTATGTGGAAAGAGGCCATTAAAAGTGAATTGGACTCACTGGTCATGAATCATACATGGGAACTAGTGGACCTTCCTATGGGAAACAAGCCAATTAGATGTAAGTGGATCTTCAAAAGAAAAAAAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGATATACCCAGAAACAAGGCATTGACTATTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGACCTTGATTGCATTGGCCGTAATACATAACCTTCTTATTCTCCAAATAGACGTAAAAACAACCTTTTTAAATGGTGACCTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACGAGAAAGTCCCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTATGAAAAATTTAACAATACGTTGA

mRNA sequence

ATGCATGATCCTGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTGATACTTCAAACCTAAGATGCGAATTAGAACTTAGGAGAAGTAAAAGAAAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACCTTCATAGTGGAAAGACGTGATGAAATTGACTGTAACTTCACAAACTTGTACTTAATAGAAGAGGATCCTAAAACTTACCAAGAAGCGCTAAACTCTGTAGATTCAAGTATGTGGAAAGAGGCCATTAAAAGTGAATTGGACTCACTGGTCATGAATCATACATGGGAACTAGTGGACCTTCCTATGGGAAACAAGCCAATTAGATGTAAGTGGATCTTCAAAAGAAAAAAAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGATATACCCAGAAACAAGGCATTGACTATTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGACCTTGATTGCATTGGCCGTAATACATAACCTTCTTATTCTCCAAATAGACGTAAAAACAACCTTTTTAAATGGTGACCTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACGAGAAAGTCCCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTATGAAAAATTTAACAATACGTTGA

Coding sequence (CDS)

ATGCATGATCCTGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTGATACTTCAAACCTAAGATGCGAATTAGAACTTAGGAGAAGTAAAAGAAAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACCTTCATAGTGGAAAGACGTGATGAAATTGACTGTAACTTCACAAACTTGTACTTAATAGAAGAGGATCCTAAAACTTACCAAGAAGCGCTAAACTCTGTAGATTCAAGTATGTGGAAAGAGGCCATTAAAAGTGAATTGGACTCACTGGTCATGAATCATACATGGGAACTAGTGGACCTTCCTATGGGAAACAAGCCAATTAGATGTAAGTGGATCTTCAAAAGAAAAAAAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGATATACCCAGAAACAAGGCATTGACTATTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGACCTTGATTGCATTGGCCGTAATACATAACCTTCTTATTCTCCAAATAGACGTAAAAACAACCTTTTTAAATGGTGACCTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACGAGAAAGTCCCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTATGAAAAATTTAACAATACGTTGA

Protein sequence

MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLILQIDVKTTFLNGDLEEEIYMTQPEGFKISGQENKVCKRESPYTVSSKLPNSGMKNLTIR

Homology

[Close]

BLAST of Cmc08g0221681 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 389.4 bits (999), Expect = 2.2e-104
Identity = 198/222 (89.19%), Postives = 205/222 (92.34%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDC 60
           MHDPE   IVSE PVSETVDT NL CELE RRSKR+RTEKSFGPDFLSTFIVERRDEIDC
Sbjct: 766 MHDPE---IVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKW 120
           NFTNL+LI+EDPKTYQEALNSVDS MWKEAIKSELDSL MNHTWELVDLPMGNKPIRCKW
Sbjct: 826 NFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLIL 180
           IFKRK KPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR LIALA IHNLLI 
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIH 945

Query: 181 QIDVKTTFLNGDLEEEIYMTQPEGFKISGQENKVCK-RESPY 222
           Q+DVKT FLNG+LEEEIYMTQPEGFKISGQENKVCK R+S Y
Sbjct: 946 QMDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLY 984

[Close]

BLAST of Cmc08g0221681 vs. NCBI nr
Match: KAA0042080.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK18022.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 316.6 bits (810), Expect = 1.8e-82
Identity = 157/168 (93.45%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDC 60
           MHDPENPSIVSE PVSETVDTSNLRCELELRRSKR+RTEKSFG DFLSTFIVERRDEID 
Sbjct: 496 MHDPENPSIVSEIPVSETVDTSNLRCELELRRSKRQRTEKSFGQDFLSTFIVERRDEIDR 555

Query: 61  NFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKW 120
           NFTNLYLI+EDPKTYQEALNSVD SMWKEAI SELDSLVMNHTW+LVDLPM NKPIRCKW
Sbjct: 556 NFTNLYLIDEDPKTYQEALNSVDLSMWKEAINSELDSLVMNHTWDLVDLPMENKPIRCKW 615

Query: 121 IFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTL 169
           IFKRK KPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR L
Sbjct: 616 IFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRAL 663

[Close]

BLAST of Cmc08g0221681 vs. NCBI nr
Match: KAA0036643.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.3 bits (765), Expect = 3.0e-77
Identity = 149/166 (89.76%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDC 60
           MHDPE   IVSE PVSE VDT NL CELE RRSKR+RTEKSFGPDFLSTFIVERRDEIDC
Sbjct: 766 MHDPE---IVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKW 120
           NFTNL+LI ED KTYQEALNSVDS MWKEAIKSELDSL MNHTWELVDLPMGNKPIRCKW
Sbjct: 826 NFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR 167
           IFKRK KPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR 928

[Close]

BLAST of Cmc08g0221681 vs. NCBI nr
Match: KAA0038001.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 295.4 bits (755), Expect = 4.3e-76
Identity = 144/159 (90.57%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDC 60
           MHDPEN SIVSET VSE V+TSNLRCELELRRSKR+RTEKSF PDFLSTFIVERRDEID 
Sbjct: 494 MHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVERRDEIDF 553

Query: 61  NFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKW 120
           NFTNLYLI+EDPKTYQE LNSV+ SMWKEAIKSELDSLVMNHTW+LVDLPMGNKPIRC+W
Sbjct: 554 NFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCRW 613

Query: 121 IFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPV 160
           IFKRK KPNGS+ERYKARLVVVGYTQKQGIDYFDTYSPV
Sbjct: 614 IFKRKTKPNGSMERYKARLVVVGYTQKQGIDYFDTYSPV 652

[Close]

BLAST of Cmc08g0221681 vs. NCBI nr
Match: TYJ97996.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 1.7e-72
Identity = 137/145 (94.48%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDC 60
           MHDPENPSIVSETPVSETV+TSNLRCELEL RSKR+RTEKSFGPDFLSTFIVERRDEIDC
Sbjct: 350 MHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVERRDEIDC 409

Query: 61  NFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKW 120
           NFTNLYLI+EDPKTYQEALNSV+SSMWKEAIKSELDSLVMNHTW+LVDLPMGNKPIRCKW
Sbjct: 410 NFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 469

Query: 121 IFKRKKKPNGSIERYKARLVVVGYT 146
           IFKRK KPNGSIERYK RLVVVGYT
Sbjct: 470 IFKRKTKPNGSIERYKTRLVVVGYT 494

[Close]

BLAST of Cmc08g0221681 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 6.3e-38
Identity = 84/189 (44.44%), Postives = 126/189 (66.67%), Query Frame = 0


Query: 30  LRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEED--PKTYQEALNSVDSSMW 89
           LRRS+R R E    P                  T   LI +D  P++ +E L+  + +  
Sbjct: 784 LRRSERPRVESRRYPS-----------------TEYVLISDDREPESLKEVLSHPEKNQL 843

Query: 90  KEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARLVVVGYTQK 149
            +A++ E++SL  N T++LV+LP G +P++CKW+FK KK  +  + RYKARLVV G+ QK
Sbjct: 844 MKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQK 903

Query: 150 QGIDYFDTYSPVTKITTIRTLIALAVIHNLLILQIDVKTTFLNGDLEEEIYMTQPEGFKI 209
           +GID+ + +SPV K+T+IRT+++LA   +L + Q+DVKT FL+GDLEEEIYM QPEGF++
Sbjct: 904 KGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEV 955

Query: 210 SGQENKVCK 217
           +G+++ VCK
Sbjct: 964 AGKKHMVCK 955

[Close]

BLAST of Cmc08g0221681 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-28
Identity = 64/149 (42.95%), Postives = 96/149 (64.43%), Query Frame = 0


Query: 69   EEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPI-RCKWIFKRKKK 128
            E +P+T   A+ ++    W+ A+ SE+++ + NHTW+LV  P  +  I  C+WIF +K  
Sbjct: 953  ESEPRT---AIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYN 1012

Query: 129  PNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLILQIDVKTT 188
             +GS+ RYKARLV  GY Q+ G+DY +T+SPV K T+IR ++ +AV  +  I Q+DV   
Sbjct: 1013 SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1072

Query: 189  FLNGDLEEEIYMTQPEGFKISGQENKVCK 217
            FL G L +++YM+QP GF    + N VCK
Sbjct: 1073 FLQGTLTDDVYMSQPPGFIDKDRPNYVCK 1098

[Close]

BLAST of Cmc08g0221681 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-27
Identity = 62/147 (42.18%), Postives = 96/147 (65.31%), Query Frame = 0


Query: 71   DPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPI-RCKWIFKRKKKPN 130
            +P+T   A+ ++    W++A+ SE+++ + NHTW+LV  P  +  I  C+WIF +K   +
Sbjct: 938  EPRT---AIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSD 997

Query: 131  GSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLILQIDVKTTFL 190
            GS+ RYKARLV  GY Q+ G+DY +T+SPV K T+IR ++ +AV  +  I Q+DV   FL
Sbjct: 998  GSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFL 1057

Query: 191  NGDLEEEIYMTQPEGFKISGQENKVCK 217
             G L +E+YM+QP GF    + + VC+
Sbjct: 1058 QGTLTDEVYMSQPPGFVDKDRPDYVCR 1081

[Close]

BLAST of Cmc08g0221681 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 123.2 bits (308), Expect = 3.8e-27
Identity = 74/197 (37.56%), Postives = 113/197 (57.36%), Query Frame = 0


Query: 21   TSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIEED-PKTYQEAL 80
            T N   E+  RRS+R +T+     +       E  + ++    N + I  D P ++ E  
Sbjct: 846  TKNDGIEIINRRSERLKTKPQISYN-------EEDNSLNKVVLNAHTIFNDVPNSFDEIQ 905

Query: 81   NSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWIFKRKKKPNGSIERYKARL 140
               D S W+EAI +EL++  +N+TW +   P     +  +W+F  K    G+  RYKARL
Sbjct: 906  YRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARL 965

Query: 141  VVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLILQIDVKTTFLNGDLEEEIYM 200
            V  G+TQK  IDY +T++PV +I++ R +++L + +NL + Q+DVKT FLNG L+EEIYM
Sbjct: 966  VARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYM 1025

Query: 201  TQPEGFKISGQENKVCK 217
              P+G  IS   + VCK
Sbjct: 1026 RLPQG--ISCNSDNVCK 1033

[Close]

BLAST of Cmc08g0221681 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-16
Identity = 44/105 (41.90%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 68  IEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWIFKRKKK 127
           I+++PK+   AL       W +A++ ELD+L  N TW LV  P+    + CKW+FK K  
Sbjct: 24  IKKEPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 83

Query: 128 PNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALA 173
            +G+++R KARLV  G+ Q++GI + +TYSPV +  TIRT++ +A
Sbjct: 84  SDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc08g0221681 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 1.1e-104
Identity = 198/222 (89.19%), Postives = 205/222 (92.34%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDC 60
           MHDPE   IVSE PVSETVDT NL CELE RRSKR+RTEKSFGPDFLSTFIVERRDEIDC
Sbjct: 766 MHDPE---IVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKW 120
           NFTNL+LI+EDPKTYQEALNSVDS MWKEAIKSELDSL MNHTWELVDLPMGNKPIRCKW
Sbjct: 826 NFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLIL 180
           IFKRK KPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR LIALA IHNLLI 
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIH 945

Query: 181 QIDVKTTFLNGDLEEEIYMTQPEGFKISGQENKVCK-RESPY 222
           Q+DVKT FLNG+LEEEIYMTQPEGFKISGQENKVCK R+S Y
Sbjct: 946 QMDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLY 984

[Close]

BLAST of Cmc08g0221681 vs. ExPASy TrEMBL
Match: A0A5A7TFH9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003410 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 8.7e-83
Identity = 157/168 (93.45%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDC 60
           MHDPENPSIVSE PVSETVDTSNLRCELELRRSKR+RTEKSFG DFLSTFIVERRDEID 
Sbjct: 496 MHDPENPSIVSEIPVSETVDTSNLRCELELRRSKRQRTEKSFGQDFLSTFIVERRDEIDR 555

Query: 61  NFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKW 120
           NFTNLYLI+EDPKTYQEALNSVD SMWKEAI SELDSLVMNHTW+LVDLPM NKPIRCKW
Sbjct: 556 NFTNLYLIDEDPKTYQEALNSVDLSMWKEAINSELDSLVMNHTWDLVDLPMENKPIRCKW 615

Query: 121 IFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTL 169
           IFKRK KPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR L
Sbjct: 616 IFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRAL 663

[Close]

BLAST of Cmc08g0221681 vs. ExPASy TrEMBL
Match: A0A5A7T166 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00120 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.4e-77
Identity = 149/166 (89.76%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDC 60
           MHDPE   IVSE PVSE VDT NL CELE RRSKR+RTEKSFGPDFLSTFIVERRDEIDC
Sbjct: 766 MHDPE---IVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKW 120
           NFTNL+LI ED KTYQEALNSVDS MWKEAIKSELDSL MNHTWELVDLPMGNKPIRCKW
Sbjct: 826 NFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR 167
           IFKRK KPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR 928

[Close]

BLAST of Cmc08g0221681 vs. ExPASy TrEMBL
Match: A0A5A7T8N6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001890 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 2.1e-76
Identity = 144/159 (90.57%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDC 60
           MHDPEN SIVSET VSE V+TSNLRCELELRRSKR+RTEKSF PDFLSTFIVERRDEID 
Sbjct: 494 MHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVERRDEIDF 553

Query: 61  NFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKW 120
           NFTNLYLI+EDPKTYQE LNSV+ SMWKEAIKSELDSLVMNHTW+LVDLPMGNKPIRC+W
Sbjct: 554 NFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCRW 613

Query: 121 IFKRKKKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPV 160
           IFKRK KPNGS+ERYKARLVVVGYTQKQGIDYFDTYSPV
Sbjct: 614 IFKRKTKPNGSMERYKARLVVVGYTQKQGIDYFDTYSPV 652

[Close]

BLAST of Cmc08g0221681 vs. ExPASy TrEMBL
Match: A0A5D3BFX4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00190 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 8.2e-73
Identity = 137/145 (94.48%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCELELRRSKRKRTEKSFGPDFLSTFIVERRDEIDC 60
           MHDPENPSIVSETPVSETV+TSNLRCELEL RSKR+RTEKSFGPDFLSTFIVERRDEIDC
Sbjct: 350 MHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVERRDEIDC 409

Query: 61  NFTNLYLIEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKW 120
           NFTNLYLI+EDPKTYQEALNSV+SSMWKEAIKSELDSLVMNHTW+LVDLPMGNKPIRCKW
Sbjct: 410 NFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 469

Query: 121 IFKRKKKPNGSIERYKARLVVVGYT 146
           IFKRK KPNGSIERYK RLVVVGYT
Sbjct: 470 IFKRKTKPNGSIERYKTRLVVVGYT 494

[Close]

BLAST of Cmc08g0221681 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 141.7 bits (356), Expect = 7.4e-34
Identity = 63/136 (46.32%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 70  EDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWIFKRKKKPN 129
           ++P TY EA   +   +W  A+  E+ ++   HTWE+  LP   KPI CKW++K K   +
Sbjct: 84  KEPSTYNEAKEFL---VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 130 GSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALAVIHNLLILQIDVKTTFL 189
           G+IERYKARLV  GYTQ++GID+ +T+SPV K+T+++ ++A++ I+N  + Q+D+   FL
Sbjct: 144 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 203

Query: 190 NGDLEEEIYMTQPEGF 206
           NGDL+EEIYM  P G+
Sbjct: 204 NGDLDEEIYMKLPPGY 216

[Close]

BLAST of Cmc08g0221681 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 88.6 bits (218), Expect = 7.4e-18
Identity = 44/105 (41.90%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 68  IEEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWIFKRKKK 127
           I+++PK+   AL       W +A++ ELD+L  N TW LV  P+    + CKW+FK K  
Sbjct: 24  IKKEPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 83

Query: 128 PNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRTLIALA 173
            +G+++R KARLV  G+ Q++GI + +TYSPV +  TIRT++ +A
Sbjct: 84  SDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc08g0221681 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	2.2e-104	89.19	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042080.1	1.8e-82	93.45	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK18022.1 ty1-cop...	[more]
KAA0036643.1	3.0e-77	89.76	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038001.1	4.3e-76	90.57	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ97996.1	1.7e-72	94.48	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0221681 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.3e-38	44.44	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	1.2e-28	42.95	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.3e-27	42.18	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	3.8e-27	37.56	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	1.0e-16	41.90	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0221681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	1.1e-104	89.19	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TFH9	8.7e-83	93.45	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T166	1.4e-77	89.76	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T8N6	2.1e-76	90.57	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BFX4	8.2e-73	94.48	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc08g0221681 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	7.4e-34	46.32	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	7.4e-18	41.90	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 101..217 e-value: 2.0E-38 score: 132.4
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 70..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0221681.1	Cmc08g0221681.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006631	fatty acid metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding