Cmc08g0220881 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0220881
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ribonuclease H
Location	CMiso1.1chr08: 8738107 .. 8738715 (-)
RNA-Seq Expression	Cmc08g0220881
Synteny	Cmc08g0220881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATCATGATAGATGCAACTGCAGGGCATGAAGCTTTATCTTTTATGGATGGGTCGTCAGGATATAATCAGATTAGAATGGCTCTAGAGGACGAGGAGAAAACAGCATTCCGAACTCCAAAAGGTATATACTGTTATAAGGTAATGCCTTTCGGATTGAAAAATGCAGGTGCTACATATCAGCGCGCTATGCAAAGGATCTTTGATGATATGTTGCATAAACACATTGAATGTTATGTTGACGATCTCGTAGTCAAGTCCAAGAAGAAATGCGATCACTTGAAAGACCTAAAGCTGGTACTTGATCGCCTCAGAAAATATCAACTAAGAATGAACCCTCTCAAGTGTGCATTTGGTGTAACTTCAGGGAAGTTTTTGGGATTTATAGTGAGACATCGCGGCATCGAAGTTGATCACTCAAAAATTGATGCTATCCAGAAGATGCCAAGTCCGAAGAACCTGCACGAATTGAGACGATTGCAAGGTCGCTTGGCTTACATTAGAAGGTTTATATCTAATCTTGCAGGTCGATGTCAACCATTCCAGAGACTAATGAGGAAGGATGCAGTCTTTGATTGGGAACCAGTCATGCCAAAATGCATTTGA

mRNA sequence

ATGGAAATCATGATAGATGCAACTGCAGGGCATGAAGCTTTATCTTTTATGGATGGGTCGTCAGGATATAATCAGATTAGAATGGCTCTAGAGGACGAGGAGAAAACAGCATTCCGAACTCCAAAAGGTATATACTGTTATAAGGTAATGCCTTTCGGATTGAAAAATGCAGGTGCTACATATCAGCGCGCTATGCAAAGGATCTTTGATGATATGTTGCATAAACACATTGAATGTTATGTTGACGATCTCGTAGTCAAGTCCAAGAAGAAATGCGATCACTTGAAAGACCTAAAGCTGGTACTTGATCGCCTCAGAAAATATCAACTAAGAATGAACCCTCTCAAGTGTGCATTTGGTGTAACTTCAGGGAAGTTTTTGGGATTTATAGTGAGACATCGCGGCATCGAAGTTGATCACTCAAAAATTGATGCTATCCAGAAGATGCCAAGTCCGAAGAACCTGCACGAATTGAGACGATTGCAAGGTCGCTTGGCTTACATTAGAAGGTTTATATCTAATCTTGCAGGTCGATGTCAACCATTCCAGAGACTAATGAGGAAGGATGCAGTCTTTGATTGGGAACCAGTCATGCCAAAATGCATTTGA

Coding sequence (CDS)

ATGGAAATCATGATAGATGCAACTGCAGGGCATGAAGCTTTATCTTTTATGGATGGGTCGTCAGGATATAATCAGATTAGAATGGCTCTAGAGGACGAGGAGAAAACAGCATTCCGAACTCCAAAAGGTATATACTGTTATAAGGTAATGCCTTTCGGATTGAAAAATGCAGGTGCTACATATCAGCGCGCTATGCAAAGGATCTTTGATGATATGTTGCATAAACACATTGAATGTTATGTTGACGATCTCGTAGTCAAGTCCAAGAAGAAATGCGATCACTTGAAAGACCTAAAGCTGGTACTTGATCGCCTCAGAAAATATCAACTAAGAATGAACCCTCTCAAGTGTGCATTTGGTGTAACTTCAGGGAAGTTTTTGGGATTTATAGTGAGACATCGCGGCATCGAAGTTGATCACTCAAAAATTGATGCTATCCAGAAGATGCCAAGTCCGAAGAACCTGCACGAATTGAGACGATTGCAAGGTCGCTTGGCTTACATTAGAAGGTTTATATCTAATCTTGCAGGTCGATGTCAACCATTCCAGAGACTAATGAGGAAGGATGCAGTCTTTGATTGGGAACCAGTCATGCCAAAATGCATTTGA

Protein sequence

MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQPFQRLMRKDAVFDWEPVMPKCI

Homology

[Close]

BLAST of Cmc08g0220881 vs. NCBI nr
Match: TYJ98225.1 (uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 403.3 bits (1035), Expect = 1.2e-108
Identity = 194/195 (99.49%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1    MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
            MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT
Sbjct: 1415 MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 1474

Query: 61   YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
            YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG
Sbjct: 1475 YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 1534

Query: 121  VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
            VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ
Sbjct: 1535 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 1594

Query: 181  PFQRLMRKDAVFDWE 196
            PFQRLMRKDAVFDW+
Sbjct: 1595 PFQRLMRKDAVFDWD 1609

[Close]

BLAST of Cmc08g0220881 vs. NCBI nr
Match: TYK02262.1 (uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 403.3 bits (1035), Expect = 1.2e-108
Identity = 194/195 (99.49%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
           MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT
Sbjct: 791 MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 850

Query: 61  YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
           YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG
Sbjct: 851 YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 910

Query: 121 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
           VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ
Sbjct: 911 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 970

Query: 181 PFQRLMRKDAVFDWE 196
           PFQRLMRKDAVFDW+
Sbjct: 971 PFQRLMRKDAVFDWD 985

[Close]

BLAST of Cmc08g0220881 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 402.9 bits (1034), Expect = 1.6e-108
Identity = 193/195 (98.97%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1    MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
            MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT
Sbjct: 1437 MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 1496

Query: 61   YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
            YQRAMQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG
Sbjct: 1497 YQRAMQRIFDDMLHKHVECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 1556

Query: 121  VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
            VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ
Sbjct: 1557 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 1616

Query: 181  PFQRLMRKDAVFDWE 196
            PFQRLMRKDAVFDW+
Sbjct: 1617 PFQRLMRKDAVFDWD 1631

[Close]

BLAST of Cmc08g0220881 vs. NCBI nr
Match: TYK16275.1 (uncharacterized protein E5676_scaffold21G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 402.9 bits (1034), Expect = 1.6e-108
Identity = 193/195 (98.97%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
           MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT
Sbjct: 620 MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 679

Query: 61  YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
           YQRAMQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG
Sbjct: 680 YQRAMQRIFDDMLHKHVECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 739

Query: 121 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
           VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ
Sbjct: 740 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 799

Query: 181 PFQRLMRKDAVFDWE 196
           PFQRLMRKDAVFDW+
Sbjct: 800 PFQRLMRKDAVFDWD 814

[Close]

BLAST of Cmc08g0220881 vs. NCBI nr
Match: TYK18071.1 (uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa])

HSP 1 Score: 402.9 bits (1034), Expect = 1.6e-108
Identity = 193/195 (98.97%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1    MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
            MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT
Sbjct: 1367 MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 1426

Query: 61   YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
            YQRAMQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG
Sbjct: 1427 YQRAMQRIFDDMLHKHVECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 1486

Query: 121  VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
            VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ
Sbjct: 1487 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 1546

Query: 181  PFQRLMRKDAVFDWE 196
            PFQRLMRKDAVFDW+
Sbjct: 1547 PFQRLMRKDAVFDWD 1561

[Close]

BLAST of Cmc08g0220881 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.4e-32
Identity = 66/202 (32.67%), Postives = 109/202 (53.96%), Query Frame = 0


Query: 1   MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
           +E ++    G    + +D  S Y+ IR+   DE K AFR P+G++ Y VMP+G+  A A 
Sbjct: 485 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAH 544

Query: 61  YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
           +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N  KC F 
Sbjct: 545 FQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFH 604

Query: 121 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
            +  KF+G+ +  +G       ID + +   PKN  ELR+  G + Y+R+FI   +    
Sbjct: 605 QSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTH 664

Query: 181 PFQRLMRKDAVFDWEPVMPKCI 203
           P   L++KD  + W P   + I
Sbjct: 665 PLNNLLKKDVRWKWTPTQTQAI 686

[Close]

BLAST of Cmc08g0220881 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.4e-32
Identity = 66/202 (32.67%), Postives = 109/202 (53.96%), Query Frame = 0


Query: 1   MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
           +E ++    G    + +D  S Y+ IR+   DE K AFR P+G++ Y VMP+G+  A A 
Sbjct: 485 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAH 544

Query: 61  YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
           +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N  KC F 
Sbjct: 545 FQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFH 604

Query: 121 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
            +  KF+G+ +  +G       ID + +   PKN  ELR+  G + Y+R+FI   +    
Sbjct: 605 QSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTH 664

Query: 181 PFQRLMRKDAVFDWEPVMPKCI 203
           P   L++KD  + W P   + I
Sbjct: 665 PLNNLLKKDVRWKWTPTQTQAI 686

[Close]

BLAST of Cmc08g0220881 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.4e-32
Identity = 66/202 (32.67%), Postives = 109/202 (53.96%), Query Frame = 0


Query: 1   MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
           +E ++    G    + +D  S Y+ IR+   DE K AFR P+G++ Y VMP+G+  A A 
Sbjct: 485 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAH 544

Query: 61  YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
           +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N  KC F 
Sbjct: 545 FQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFH 604

Query: 121 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
            +  KF+G+ +  +G       ID + +   PKN  ELR+  G + Y+R+FI   +    
Sbjct: 605 QSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTH 664

Query: 181 PFQRLMRKDAVFDWEPVMPKCI 203
           P   L++KD  + W P   + I
Sbjct: 665 PLNNLLKKDVRWKWTPTQTQAI 686

[Close]

BLAST of Cmc08g0220881 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.4e-32
Identity = 66/202 (32.67%), Postives = 109/202 (53.96%), Query Frame = 0


Query: 1   MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
           +E ++    G    + +D  S Y+ IR+   DE K AFR P+G++ Y VMP+G+  A A 
Sbjct: 485 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAH 544

Query: 61  YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
           +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N  KC F 
Sbjct: 545 FQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFH 604

Query: 121 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
            +  KF+G+ +  +G       ID + +   PKN  ELR+  G + Y+R+FI   +    
Sbjct: 605 QSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTH 664

Query: 181 PFQRLMRKDAVFDWEPVMPKCI 203
           P   L++KD  + W P   + I
Sbjct: 665 PLNNLLKKDVRWKWTPTQTQAI 686

[Close]

BLAST of Cmc08g0220881 vs. ExPASy Swiss-Prot
Match: P0CT37 (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-4 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.4e-32
Identity = 66/202 (32.67%), Postives = 109/202 (53.96%), Query Frame = 0


Query: 1   MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
           +E ++    G    + +D  S Y+ IR+   DE K AFR P+G++ Y VMP+G+  A A 
Sbjct: 485 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAH 544

Query: 61  YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
           +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N  KC F 
Sbjct: 545 FQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFH 604

Query: 121 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
            +  KF+G+ +  +G       ID + +   PKN  ELR+  G + Y+R+FI   +    
Sbjct: 605 QSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTH 664

Query: 181 PFQRLMRKDAVFDWEPVMPKCI 203
           P   L++KD  + W P   + I
Sbjct: 665 PLNNLLKKDVRWKWTPTQTQAI 686

[Close]

BLAST of Cmc08g0220881 vs. ExPASy TrEMBL
Match: A0A5D3BTY1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.0e-109
Identity = 194/195 (99.49%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
           MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT
Sbjct: 791 MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 850

Query: 61  YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
           YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG
Sbjct: 851 YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 910

Query: 121 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
           VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ
Sbjct: 911 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 970

Query: 181 PFQRLMRKDAVFDWE 196
           PFQRLMRKDAVFDW+
Sbjct: 971 PFQRLMRKDAVFDWD 985

[Close]

BLAST of Cmc08g0220881 vs. ExPASy TrEMBL
Match: A0A5D3BIH8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001270 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.0e-109
Identity = 194/195 (99.49%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1    MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
            MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT
Sbjct: 1415 MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 1474

Query: 61   YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
            YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG
Sbjct: 1475 YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 1534

Query: 121  VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
            VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ
Sbjct: 1535 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 1594

Query: 181  PFQRLMRKDAVFDWE 196
            PFQRLMRKDAVFDW+
Sbjct: 1595 PFQRLMRKDAVFDWD 1609

[Close]

BLAST of Cmc08g0220881 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 7.9e-109
Identity = 193/195 (98.97%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1    MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
            MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT
Sbjct: 1437 MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 1496

Query: 61   YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
            YQRAMQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG
Sbjct: 1497 YQRAMQRIFDDMLHKHVECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 1556

Query: 121  VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
            VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ
Sbjct: 1557 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 1616

Query: 181  PFQRLMRKDAVFDWE 196
            PFQRLMRKDAVFDW+
Sbjct: 1617 PFQRLMRKDAVFDWD 1631

[Close]

BLAST of Cmc08g0220881 vs. ExPASy TrEMBL
Match: A0A5D3CXS1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00440 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 7.9e-109
Identity = 193/195 (98.97%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
           MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT
Sbjct: 620 MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 679

Query: 61  YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
           YQRAMQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG
Sbjct: 680 YQRAMQRIFDDMLHKHVECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 739

Query: 121 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
           VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ
Sbjct: 740 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 799

Query: 181 PFQRLMRKDAVFDWE 196
           PFQRLMRKDAVFDW+
Sbjct: 800 PFQRLMRKDAVFDWD 814

[Close]

BLAST of Cmc08g0220881 vs. ExPASy TrEMBL
Match: A0A5D3D1E5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004020 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 7.9e-109
Identity = 193/195 (98.97%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1    MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 60
            MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT
Sbjct: 1367 MEIMIDATAGHEALSFMDGSSGYNQIRMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGAT 1426

Query: 61   YQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 120
            YQRAMQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG
Sbjct: 1427 YQRAMQRIFDDMLHKHVECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFG 1486

Query: 121  VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 180
            VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ
Sbjct: 1487 VTSGKFLGFIVRHRGIEVDHSKIDAIQKMPSPKNLHELRRLQGRLAYIRRFISNLAGRCQ 1546

Query: 181  PFQRLMRKDAVFDWE 196
            PFQRLMRKDAVFDW+
Sbjct: 1547 PFQRLMRKDAVFDWD 1561

The following BLAST results are available for this feature:

BLAST of Cmc08g0220881 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98225.1	1.2e-108	99.49	uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]	[more]
TYK02262.1	1.2e-108	99.49	uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]	[more]
KAA0047477.1	1.6e-108	98.97	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
TYK16275.1	1.6e-108	98.97	uncharacterized protein E5676_scaffold21G00440 [Cucumis melo var. makuwa]	[more]
TYK18071.1	1.6e-108	98.97	uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0220881 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CT41	4.4e-32	32.67	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.4e-32	32.67	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	4.4e-32	32.67	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	4.4e-32	32.67	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT37	4.4e-32	32.67	Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc08g0220881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTY1	6.0e-109	99.49	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 ...	[more]
A0A5D3BIH8	6.0e-109	99.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TZU9	7.9e-109	98.97	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5D3CXS1	7.9e-109	98.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D1E5	7.9e-109	98.97	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00402...	[more]

BLAST of Cmc08g0220881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 7..131 e-value: 5.6E-25 score: 88.2
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..131 score: 10.187553
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 24..56 e-value: 2.6E-40 score: 140.0
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..174
None	No IPR available	PANTHER	PTHR24559:SF341	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 2..174
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..131 e-value: 1.7175E-63 score: 192.425
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 140..201 e-value: 5.9E-13 score: 50.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 3..131 e-value: 2.6E-40 score: 140.0
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 4..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0220881.1	Cmc08g0220881.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity