Cmc08g0220431 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0220431
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionLysM domain-containing protein
LocationCMiso1.1chr08: 8393494 .. 8394275 (+)
RNA-Seq ExpressionCmc08g0220431
SyntenyCmc08g0220431
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCATTGAAGGAACCTTTCAACTTCCTCTCAAGAAAAAACTTCACCCACTTCAACTACCTTTATAACCCAAACCTTATTCATTTCTTTCTTATACACACACACATGTATATATACACATATTAGCATTAAGAAACATAACCAATTAATTCCATATAGAAGTGTTATATATACAATGGGGAAGAGATCACCATCACCACCACCACCACCATCCTCATCAAAGGCAACGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAGAGCAGTGAATTATTAGAGTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATTAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCACATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTATCAAATATCCCACCTTTCTCACACCTTAATTATTATTCATCTAATTCAATTATATTTTTCTTGGGTTATTATATCATTATATATATTGCTTCTTCTTTTGTTTCCGATAAGTTTTTGTAATGGATAATCTTATGTGTATCTTTTTAGTTAACAATTGTAATGGTGTGGAAAATTGAACCGTCCGTCCTTGAAACGATAATTTTTTTTTTCTTTTTGACAATATAGGTGTAAAGAAGAATCAAACTTTTTAACTTTTTCGAGATTTATTCTATTTGCTTTATAATAATACTTATGCTTATCATGATTTACTGAGTTATGTTCA

mRNA sequence

CTTCATTGAAGGAACCTTTCAACTTCCTCTCAAGAAAAAACTTCACCCACTTCAACTACCTTTATAACCCAAACCTTATTCATTTCTTTCTTATACACACACACATGTATATATACACATATTAGCATTAAGAAACATAACCAATTAATTCCATATAGAAGTGTTATATATACAATGGGGAAGAGATCACCATCACCACCACCACCACCATCCTCATCAAAGGCAACGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAGAGCAGTGAATTATTAGAGTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATTAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCACATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTATCAAATATCCCACCTTTCTCACACCTTAATTATTATTCATCTAATTCAATTATATTTTTCTTGGGTTATTATATCATTATATATATTGCTTCTTCTTTTGTTTCCGATAAGTTTTTGTAATGGATAATCTTATGTGTATCTTTTTAGTTAACAATTGTAATGGTGTGGAAAATTGAACCGTCCGTCCTTGAAACGATAATTTTTTTTTTCTTTTTGACAATATAGGTGTAAAGAAGAATCAAACTTTTTAACTTTTTCGAGATTTATTCTATTTGCTTTATAATAATACTTATGCTTATCATGATTTACTGAGTTATGTTCA

Coding sequence (CDS)

ATGGGGAAGAGATCACCATCACCACCACCACCACCATCCTCATCAAAGGCAACGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAGAGCAGTGAATTATTAGAGTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATTAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCACATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTATCAAATATCCCACCTTTCTCACACCTTAA

Protein sequence

MGKRSPSPPPPPSSSKATVVSLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFIKYPTFLTP
Homology
BLAST of Cmc08g0220431 vs. NCBI nr
Match: KAE8647420.1 (hypothetical protein Csa_003059 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 5.5e-44
Identity = 94/104 (90.38%), Postives = 94/104 (90.38%), Query Frame = 0

Query: 1   MGKRSPSPPPPPSSSKATVVSLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSIS 60
           MGKRS S     S SKA VVSLVILVLSCLIWCCKSSELL YNCEEIYVVHEGETLQSIS
Sbjct: 1   MGKRS-SSSSSSSLSKAKVVSLVILVLSCLIWCCKSSELLHYNCEEIYVVHEGETLQSIS 60

Query: 61  EKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFIKYPTFLTP 105
           EKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHF KYPTFLTP
Sbjct: 61  EKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFFKYPTFLTP 103

BLAST of Cmc08g0220431 vs. NCBI nr
Match: KAG6595189.1 (hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027207.1 hypothetical protein SDJN02_11218, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.0 bits (284), Expect = 7.8e-22
Identity = 56/82 (68.29%), Postives = 64/82 (78.05%), Query Frame = 0

Query: 13 SSSKATVVSLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEEN 72
          SSS+   + LV+++    +WCC S E+L   C+EIYVV EGETLQSISEKCGDPFI E N
Sbjct: 5  SSSRREFLVLVLVLSWWCVWCCNSQEVL-MGCDEIYVVREGETLQSISEKCGDPFIFEHN 64

Query: 73 PHINDPDDVFPGLVIKITPFHH 95
          PHIND DDVFPGLVIKITPF H
Sbjct: 65 PHINDVDDVFPGLVIKITPFLH 85

BLAST of Cmc08g0220431 vs. NCBI nr
Match: XP_022744694.1 (uncharacterized protein LOC111295462 [Durio zibethinus])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 0

Query: 23  VILVLSCLIWCCKSSELLEYN-------------CEEIYVVHEGETLQSISEKCGDPFIV 82
           V+L+LSC   CC+ S   +Y              C+EIYVV EGETLQ+ISEKCGDPFIV
Sbjct: 24  VMLILSC---CCEESSGKDYRGKEVLVLQQKNKPCDEIYVVREGETLQTISEKCGDPFIV 83

Query: 83  EENPHINDPDDVFPGLVIKITPFHH 95
           EENPHI+DPDDVFPGLVIKITPF++
Sbjct: 84  EENPHIHDPDDVFPGLVIKITPFNN 105

BLAST of Cmc08g0220431 vs. NCBI nr
Match: XP_010271716.1 (PREDICTED: uncharacterized protein LOC104607716 [Nelumbo nucifera])

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-19
Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = 0

Query: 23  VILVLSCLIWCCKSSE----------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVEEN 82
           ++LV+  L+ CC SSE          ++   C+EIYVV EGETL +ISEKCGDPFIVEEN
Sbjct: 24  LVLVVLLLLGCCDSSESESLVRMNLRMISKPCDEIYVVEEGETLHTISEKCGDPFIVEEN 83

Query: 83  PHINDPDDVFPGLVIKITPF 93
           PHI+DPDDVFPGLVIKITPF
Sbjct: 84  PHIHDPDDVFPGLVIKITPF 103

BLAST of Cmc08g0220431 vs. NCBI nr
Match: OMO68297.1 (hypothetical protein COLO4_29778 [Corchorus olitorius] >OMO82149.1 hypothetical protein CCACVL1_12057 [Corchorus capsularis])

HSP 1 Score: 105.1 bits (261), Expect = 3.6e-19
Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 0

Query: 23  VILVLSCLIWCCKSSELLEYN------------------CEEIYVVHEGETLQSISEKCG 82
           V+LVLS    CC+SS+  E+                   C+EIYVV EGETLQ+ISEKCG
Sbjct: 24  VMLVLS----CCESSDQREFKGGDDLQLKELIMMKNNKPCDEIYVVKEGETLQTISEKCG 83

Query: 83  DPFIVEENPHINDPDDVFPGLVIKITPFHH 95
           DP+IVEENPHI+DPDDVFPGLVIKITPFH+
Sbjct: 84  DPYIVEENPHIHDPDDVFPGLVIKITPFHN 109

BLAST of Cmc08g0220431 vs. ExPASy TrEMBL
Match: A0A6P5YVX7 (uncharacterized protein LOC111295462 OS=Durio zibethinus OX=66656 GN=LOC111295462 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.8e-20
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 0

Query: 23  VILVLSCLIWCCKSSELLEYN-------------CEEIYVVHEGETLQSISEKCGDPFIV 82
           V+L+LSC   CC+ S   +Y              C+EIYVV EGETLQ+ISEKCGDPFIV
Sbjct: 24  VMLILSC---CCEESSGKDYRGKEVLVLQQKNKPCDEIYVVREGETLQTISEKCGDPFIV 83

Query: 83  EENPHINDPDDVFPGLVIKITPFHH 95
           EENPHI+DPDDVFPGLVIKITPF++
Sbjct: 84  EENPHIHDPDDVFPGLVIKITPFNN 105

BLAST of Cmc08g0220431 vs. ExPASy TrEMBL
Match: A0A1U8AYB4 (uncharacterized protein LOC104607716 OS=Nelumbo nucifera OX=4432 GN=LOC104607716 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-19
Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = 0

Query: 23  VILVLSCLIWCCKSSE----------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVEEN 82
           ++LV+  L+ CC SSE          ++   C+EIYVV EGETL +ISEKCGDPFIVEEN
Sbjct: 24  LVLVVLLLLGCCDSSESESLVRMNLRMISKPCDEIYVVEEGETLHTISEKCGDPFIVEEN 83

Query: 83  PHINDPDDVFPGLVIKITPF 93
           PHI+DPDDVFPGLVIKITPF
Sbjct: 84  PHIHDPDDVFPGLVIKITPF 103

BLAST of Cmc08g0220431 vs. ExPASy TrEMBL
Match: A0A1R3IHT9 (LysM domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_12057 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 0

Query: 23  VILVLSCLIWCCKSSELLEYN------------------CEEIYVVHEGETLQSISEKCG 82
           V+LVLS    CC+SS+  E+                   C+EIYVV EGETLQ+ISEKCG
Sbjct: 24  VMLVLS----CCESSDQREFKGGDDLQLKELIMMKNNKPCDEIYVVKEGETLQTISEKCG 83

Query: 83  DPFIVEENPHINDPDDVFPGLVIKITPFHH 95
           DP+IVEENPHI+DPDDVFPGLVIKITPFH+
Sbjct: 84  DPYIVEENPHIHDPDDVFPGLVIKITPFHN 109

BLAST of Cmc08g0220431 vs. ExPASy TrEMBL
Match: A0A1R3HD93 (LysM domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_29778 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 0

Query: 23  VILVLSCLIWCCKSSELLEYN------------------CEEIYVVHEGETLQSISEKCG 82
           V+LVLS    CC+SS+  E+                   C+EIYVV EGETLQ+ISEKCG
Sbjct: 24  VMLVLS----CCESSDQREFKGGDDLQLKELIMMKNNKPCDEIYVVKEGETLQTISEKCG 83

Query: 83  DPFIVEENPHINDPDDVFPGLVIKITPFHH 95
           DP+IVEENPHI+DPDDVFPGLVIKITPFH+
Sbjct: 84  DPYIVEENPHIHDPDDVFPGLVIKITPFHN 109

BLAST of Cmc08g0220431 vs. ExPASy TrEMBL
Match: A0A803MQG7 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.9e-19
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 32 WCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP 91
          W   S +++   C+E+YVV EGETL SISEKCGDP+IVEENPHINDPDDVFPGLVIKITP
Sbjct: 36 WRYVSKDMISMPCDEVYVVREGETLHSISEKCGDPYIVEENPHINDPDDVFPGLVIKITP 95

Query: 92 FHH 95
          F +
Sbjct: 96 FRN 98

BLAST of Cmc08g0220431 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-19
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 28  SCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVI 87
           +C +W  +  +++E  CEE+YVV EG+TL SISEKCGDPFIVE NPHI+DPDDVFPGL+I
Sbjct: 45  NCEVW--RGKQMMERPCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLI 104

Query: 88  KI 90
           K+
Sbjct: 105 KL 104

BLAST of Cmc08g0220431 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 35 KSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH 94
          + S+     CEEIY+V EGETL +I +KCGDPFIVE NPHI+DPDDVFPGLV+KI PF+
Sbjct: 39 RGSQFSTKPCEEIYIVGEGETLHTIGDKCGDPFIVERNPHIHDPDDVFPGLVLKIAPFY 97

BLAST of Cmc08g0220431 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 84.3 bits (207), Expect = 6.1e-17
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 44  CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP 92
           C+EIY V EGETLQ+ISEKCGDP+IVE NPHI+D DD+FPGL+I+ITP
Sbjct: 60  CDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITP 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647420.15.5e-4490.38hypothetical protein Csa_003059 [Cucumis sativus][more]
KAG6595189.17.8e-2268.29hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022744694.11.6e-1963.53uncharacterized protein LOC111295462 [Durio zibethinus][more]
XP_010271716.12.8e-1965.00PREDICTED: uncharacterized protein LOC104607716 [Nelumbo nucifera][more]
OMO68297.13.6e-1961.11hypothetical protein COLO4_29778 [Corchorus olitorius] >OMO82149.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6P5YVX77.8e-2063.53uncharacterized protein LOC111295462 OS=Durio zibethinus OX=66656 GN=LOC11129546... [more]
A0A1U8AYB41.3e-1965.00uncharacterized protein LOC104607716 OS=Nelumbo nucifera OX=4432 GN=LOC104607716... [more]
A0A1R3IHT91.7e-1961.11LysM domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_1205... [more]
A0A1R3HD931.7e-1961.11LysM domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_29778 PE... [more]
A0A803MQG73.9e-1973.02Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G25433.11.0e-1966.13peptidoglycan-binding LysM domain-containing protein [more]
AT5G62150.12.3e-1967.80peptidoglycan-binding LysM domain-containing protein [more]
AT3G52790.16.1e-1777.08peptidoglycan-binding LysM domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036779LysM domain superfamilyGENE3D3.10.350.10LysM domaincoord: 39..94
e-value: 1.0E-8
score: 36.6
IPR018392LysM domainPFAMPF01476LysMcoord: 48..90
e-value: 3.2E-5
score: 23.9
IPR018392LysM domainCDDcd00118LysMcoord: 47..89
e-value: 1.68919E-6
score: 39.7761
NoneNo IPR availablePANTHERPTHR33648EMBRYO SAC 1coord: 20..93
NoneNo IPR availablePANTHERPTHR33648:SF15EMBRYO SAC 1coord: 20..93
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..29
score: 6.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0220431.1Cmc08g0220431.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane