Cmc08g0219051 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0219051
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	50S ribosomal protein L17
Location	CMiso1.1chr08: 7228829 .. 7233029 (+)
RNA-Seq Expression	Cmc08g0219051
Synteny	Cmc08g0219051

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGAGTTGGTCTACTTCGTTACATCAAAAACCCCGAAACGAAACCTAAAGGGTTTTTCCCTCTTCGAGCTCAGTCTTTGCTCTCTATTCGCCATTAACGATGACGAAGTTTAGAAAGCTTGGTCGACCTGCAGCACACCGGATGTCCATGCTCAGGTTCCTCATTTCTTACACCTACAATCAATGACGTTTTATATCCCAATTTCTGAACGTCTTTTACTTTCTCTTCTTTTGGCAGAACAATGGTTTCTCAGTTGGTGAAGCACGAACGCATTGAGACTACTGTTGCTAAGGTATTCCTATCCTTCATTTCAACCCCCCAATAACTTTCTCCTTATCATTCTGAGATCCCCATCTTCAACCTAACTGAATATTCCTTTTCCAAGTGATGAAATTTACCTGTATCCGAAATTTCCACTTTCAACTTTCCCTGTTTGGTTCATATGGTATCTTGGTTTGTTCTGTGATCTTTGGATATTTCATTTATCAATGTAATGGTTTCTTATCCTAAAAAAGAAAAAGAAAAAAAAAAAGAAATTTCCCTGTATCACAATTCGTAGGTTCGTTGCATTGTAAATGCGATATGTCTGGAGGCTTGATGTTTTGTATTGTCTAAATTGAGCTTACATTTTGATATTTTTCCCCCTGTAATCCGAATTTAGAGTTTTGGTTAGTTAGATATATGTATGTTATCTCTTTGACCTTGGTTTGCATCTCTTTTGTTCTTTAAAAATTTAACACCTTGCTTATTGTTGAAGGATATGTATCATTCGTCAAGATCAAATAGATATTTTGGATTTCTAACATCAAAACTATTATGAATTTATGAGTTATGACCATATTTTGGAGCTTATTAATGCCTTTTTCTTCCAACCTGTTTGAAGGCTAAAGAAGTTCGGCGGCTTGCTGATAACATGGTTCAACTGGGAAAAGAGGTCCGTAGTAGTGTAACCAATTTGTTTTCTCTCTCAGCTTGTTACTCTTGATTCTTTTTCTTCTTTTGGGGAGGGTGGGTTCTGCCTTCAAATTTTTATATTAGTTGGATACTAAGAAGCAGAGAAAATTCAGTTTGGTTAACGTGCATGACTGATACATATTAGACTCTCTAACACTTATTAGACATGTATTAGAGGCTTGGTAATGGTAGCACGATAGATATGTGTATGTTAGTTGTACAAAGTTGATATTAATTATAACATTTGTTAAATATGTATTGAACACTTGTTAATTAAGCATACTTAATAGACACACGATAAAATAGCACAGAAGTTAATCAATTTTAAGTGCGAAATATATCAAACTTATTTTTAAGCATGTAGGTCCATAAATTTATTGACTTTGAATTTTCATATGGTATAAAAGAGACGTACATTTTCAAAATGCACATTTTAATAAATGCGTACTTGTCGTGTTTGTGTCCTAGATCGTAAAAAATGGTGTTTTACTGTGTGAGTTGCATGATGTCATATACATTCTTATTTGCATATCCATGCTTCTTAGGTTGGATTCTTTGTCCATTATATAATATAACATTGCACTTAGTCGTGGGATATTAAATTTGTAGATAAAGGACTAATTTGTAAATGAAAAATGCATATGGTTCAAGATTTAGCTGATCTAAAATTAGGAACATGTAAAACTTTGCGGGAGAGAAAAAAGACGGGACGGAGATTAAGTTTTGCAATTAAATAATGCAGGAAGCAAATGATGGTATTGGGCACGGTCTTGATAAATATGCTTGCAGCTTGCGGGTAAAGAAGGGAAATAGGATTTGGCCTGCAACCAACATTGGAAGCTAAGCCAAATAAGAAATGAGGCGTGCCCAATTAATAGGTTAGACCACTGAAATTTTGGCCAGGATGACGCTTTATTTCAAATGTTTCTTAAGTCAGTATAAATAACTCTCAAAAGATGGAAACCAGAAATCAGCAATGGCACATCAATATGAGAAAGAAAGATCTTTAGAAGGAAGCTTAGTTGGAACCATTTGAAAGTGAAGGAACAGTGGTTTGAGGTTCGCTGGATGTTGGGATTAAAGTGGAGTTTCAATTTCAGTGACACCCAATAATGTTTGAATTAAAGTAATGGCTCTTCACCTGGCCCTACACGAAGGGGAATATAGTAGGTTTCGCTTCTGCTTACTCCTTTTTGCACCAAGGACACATTGTCATTTACTTCAAACTAAACATATTGGGATAGAAGGAAAACAATGAAATCAACCCACTAATAGAGTTGGTGTGATAGTTTAATAACTCTATTACACCATGGACCGCGTGCAAAGGCATTCTTACTATGTTTTGTTTCTGCAATGGTGCACTCTCAGAGGCATGAGAAGATCTGGTTCATCTGTTTTGGGAGTGCGAGTTTGCTCACCACCTTTAGAGTTGCTGTCTAAGAGCTTTTGGAGCTTGTTAGATTTGAAATAAAGATGGTGGGGACCGAAATTTAGAAGGTGAATGCTCATAGGAGTTTTAGAGAGGTGGAGAGATTGGGCGACAATGTTTGGGAAGTAGCTAGTTTTAACTCCTCTTTGTGGGCGTTCGGCACTAAGTCTTTTTTAATGGTCATGTTCTTTTGAACTGAAGTCCTTGTAGTTTTTTTTTTCTTTTTTGCCTTGTATATACTTTATATTTCTCCGTCAAAGCATGGTTTCTTATATAAGAAAAATAGGAATCTTCGTTTTGCTATTTGCTTTTTGATTCATAAAAGATAATAAGCTTGTTGTGACTTATTTATCTTTTGTTTTTAATCTAGGGTACCCTTTCTGCTGCAAGGCGTGCTGCTGCTTTTGTAAGAGGCGATGCTATCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAGTGAATCCCAAATCTACTAACCTCTATTTTATAATTTTATTTATTTATTATTAAATTGGATAGATATCATGTTTAACAGAGATAGAGCTGGTGGATATACAAGATTTCTGCGCACTCGGATACGTGTTGGTGATGCTGCACCAATGGCTTATATTGAGTAAGTGCTCATGATCGACAGCTGTGATAATTCTCCAGTGAACTGTAACACACGAGTAATAGTTGATGCTTTTCCTCTCATAATCGGTTGTAAACAAATCCTGCTGTTGCAATTTTTAATTGATTATTTATGCTGTGGATACAAATTTTTACTAGTAGGGAGGGAAATAAAGTCTAAAACACTAACCTATTTGATGGCCCGCTCTCCATGAAAGTTGAATCAATTGTATTAATTCGTAGTTTCTCTATACTATTGACACAGATTTGTTGATAGAGAAAATGAGCTCAGACAGTCAAAGCCTCCAAATCCTCCACCACCTCAGAGGCCTCCATTGGATCCATGGACTAGATCACGGCTTAGCAAGCAGTTGGCACCACCCAAAGAGATCAAATCCGACTCTGAGATCTAATACTTCATGTTTAACAAGAAGGCTCCCCCTCAAGAAGTTCATCTAGCCACCACCCCGTCCAATTTGTTTTGCAAACTTCAGATGTAAACCAAACAAGTATAGACAATGCTTAAAGCTTTCCCTCAAACAAGGAGTGTTTTTCAGCTCTCAAAGTTTCCCATTTCTTGTCCTTATACTGTTTCATCTATACAACATGACATCGGACCTTAAACTGATAAAGGCTGAGTCTCTCTCAAGTAGAATCTCAACTTATTCAAAAAAATATATTATGCTTTAGGTGACTTTGGTTGAATATAGGTGAGGAACAATGGTGATGGTGGATTGTGCATCTGTTGGAGTTGCAAATTTGGATCTTGCCGTCTTGTCGACAGCCAGCAATTGCTTTGCTGCAGCAGCAAAATTTGGAGATAGGCTTCAAATATTGTGAACCAAGCATGAAACAGACATAGTACTTACTATTTCCATCTATTATCAGACACGTCATTAAATAACAAATTCATTTTTTTCATGCTACTATAGTTCTAAAAATTTTCTCCACCCAATCCATGTCTCCACGTGCATGCATTTTATGTCCATGTGTCAAATAGGTAGTCTGAAACTCACCTTGATTGCTTTGGAGGCAAGGAAAATTAGTGATTGTTGGTTCACAGGAGAAAAGGAAAGGGGGTCAGATTTGTTTTCCCTTTCTCTTTTTTTCTTTTATCAAAATTTGCTTCATTTATAATTCTTGAAAGTTAATGCATTTATCCCTATAATGTGTATTCTGTGGATATGGGAGTACTTTTAGTG

mRNA sequence

TTGGAGTTGGTCTACTTCGTTACATCAAAAACCCCGAAACGAAACCTAAAGGGTTTTTCCCTCTTCGAGCTCAGTCTTTGCTCTCTATTCGCCATTAACGATGACGAAGTTTAGAAAGCTTGGTCGACCTGCAGCACACCGGATGTCCATGCTCAGAACAATGGTTTCTCAGTTGGTGAAGCACGAACGCATTGAGACTACTGTTGCTAAGGCTAAAGAAGTTCGGCGGCTTGCTGATAACATGGTTCAACTGGGAAAAGAGGGTACCCTTTCTGCTGCAAGGCGTGCTGCTGCTTTTGTAAGAGGCGATGCTATCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAAGATAGAGCTGGTGGATATACAAGATTTCTGCGCACTCGGATACGTGTTGGTGATGCTGCACCAATGGCTTATATTGAATTTGTTGATAGAGAAAATGAGCTCAGACAGTCAAAGCCTCCAAATCCTCCACCACCTCAGAGGCCTCCATTGGATCCATGGACTAGATCACGGCTTAGCAAGCAGTTGGCACCACCCAAAGAGATCAAATCCGACTCTGAGATCTAATACTTCATGTTTAACAAGAAGGCTCCCCCTCAAGAAGTTCATCTAGCCACCACCCCGTCCAATTTGTTTTGCAAACTTCAGATGTAAACCAAACAAGTATAGACAATGCTTAAAGCTTTCCCTCAAACAAGGAGTGTTTTTCAGCTCTCAAAGTTTCCCATTTCTTGTCCTTATACTGTTTCATCTATACAACATGACATCGGACCTTAAACTGATAAAGGCTGAGTCTCTCTCAAGTAGAATCTCAACTTATTCAAAAAAATATATTATGCTTTAGGTGACTTTGGTTGAATATAGGTGAGGAACAATGGTGATGGTGGATTGTGCATCTGTTGGAGTTGCAAATTTGGATCTTGCCGTCTTGTCGACAGCCAGCAATTGCTTTGCTGCAGCAGCAAAATTTGGAGATAGGCTTCAAATATTGTGAACCAAGCATGAAACAGACATAGTACTTACTATTTCCATCTATTATCAGACACGTCATTAAATAACAAATTCATTTTTTTCATGCTACTATAGTTCTAAAAATTTTCTCCACCCAATCCATGTCTCCACGTGCATGCATTTTATGTCCATGTGTCAAATAGGTAGTCTGAAACTCACCTTGATTGCTTTGGAGGCAAGGAAAATTAGTGATTGTTGGTTCACAGGAGAAAAGGAAAGGGGGTCAGATTTGTTTTCCCTTTCTCTTTTTTTCTTTTATCAAAATTTGCTTCATTTATAATTCTTGAAAGTTAATGCATTTATCCCTATAATGTGTATTCTGTGGATATGGGAGTACTTTTAGTG

Coding sequence (CDS)

ATGACGAAGTTTAGAAAGCTTGGTCGACCTGCAGCACACCGGATGTCCATGCTCAGAACAATGGTTTCTCAGTTGGTGAAGCACGAACGCATTGAGACTACTGTTGCTAAGGCTAAAGAAGTTCGGCGGCTTGCTGATAACATGGTTCAACTGGGAAAAGAGGGTACCCTTTCTGCTGCAAGGCGTGCTGCTGCTTTTGTAAGAGGCGATGCTATCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAAGATAGAGCTGGTGGATATACAAGATTTCTGCGCACTCGGATACGTGTTGGTGATGCTGCACCAATGGCTTATATTGAATTTGTTGATAGAGAAAATGAGCTCAGACAGTCAAAGCCTCCAAATCCTCCACCACCTCAGAGGCCTCCATTGGATCCATGGACTAGATCACGGCTTAGCAAGCAGTTGGCACCACCCAAAGAGATCAAATCCGACTCTGAGATCTAA

Protein sequence

MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELRQSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI

Homology

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BLAST of Cmc08g0219051 vs. NCBI nr
Match: XP_008441029.1 (PREDICTED: 50S ribosomal protein L17 [Cucumis melo] >KAA0025538.1 50S ribosomal protein L17 [Cucumis melo var. makuwa] >TYK25697.1 50S ribosomal protein L17 [Cucumis melo var. makuwa])

HSP 1 Score: 308.1 bits (788), Expect = 4.3e-80
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120
           RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR
Sbjct: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 160
           QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 159

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BLAST of Cmc08g0219051 vs. NCBI nr
Match: XP_004148646.1 (uncharacterized protein LOC101221792 [Cucumis sativus] >KGN48368.1 hypothetical protein Csa_003833 [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 1.8e-78
Identity = 154/159 (96.86%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120
           RRAA FVRGDA+LHKLFTELAYRYKDR GGYTRFLRTRIRVGDAAPMAYIEF+DRENELR
Sbjct: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 160
           QSKPPNPPPPQRPPLDPWTRSRLSKQ APPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 159

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BLAST of Cmc08g0219051 vs. NCBI nr
Match: XP_038880926.1 (50S ribosomal protein L17 [Benincasa hispida])

HSP 1 Score: 291.6 bits (745), Expect = 4.2e-75
Identity = 149/159 (93.71%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQ GKEGTL AA
Sbjct: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60

Query: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120
           RRAAAFVRGDA+LHKLFTE+AYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEF+DRENELR
Sbjct: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 160
           QSKPPNPPPPQR PLDPWTRSRLSKQ APPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI 159

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BLAST of Cmc08g0219051 vs. NCBI nr
Match: XP_022979157.1 (uncharacterized protein LOC111478877 [Cucurbita maxima])

HSP 1 Score: 285.8 bits (730), Expect = 2.3e-73
Identity = 145/159 (91.19%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQ GKEG+L AA
Sbjct: 21  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKEGSLCAA 80

Query: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120
           R AAAFVRGD +LHKLFTELAYRYKDRAGGYTR LRTRIRVGDAAPMAYIEF+DRENELR
Sbjct: 81  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 140

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 160
           QSKPPNP PPQ+ P+DPWTRSRLSKQ APPKEIKSDSEI
Sbjct: 141 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 179

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BLAST of Cmc08g0219051 vs. NCBI nr
Match: XP_022132421.1 (uncharacterized protein LOC111005280 [Momordica charantia])

HSP 1 Score: 279.6 bits (714), Expect = 1.6e-71
Identity = 142/159 (89.31%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRP  HRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQ GKE +L AA
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAA 60

Query: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120
           RRAAAFVRGD +LHKLFTELAYRYKDRAGGYTR LRTRIRVGDAAPMAYIEF+DRENELR
Sbjct: 61  RRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 160
           QSKPPNP P Q+ PLDPWTRSRLSKQ APPKEIKSDSE+
Sbjct: 121 QSKPPNPQPQQKAPLDPWTRSRLSKQFAPPKEIKSDSEV 159

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BLAST of Cmc08g0219051 vs. ExPASy Swiss-Prot
Match: A0L5Z9 (50S ribosomal protein L17 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=rplQ PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 61/113 (53.98%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 5   RKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAA 64
           R+L R  +HR +M++ M+  L KHERIETTV +AKE+R +A+ ++ LGK G L A R+A 
Sbjct: 8   RRLSRDTSHRQAMIKNMLVSLFKHERIETTVPRAKELRPVAEKVITLGKRGDLHARRQAL 67

Query: 65  AFVRGD-AILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRE 117
           + + GD  ++HKLFT+LA R KDR GGYTR L+TR R GD APM++IE V+R+
Sbjct: 68  SILNGDKEVVHKLFTDLAERNKDRQGGYTRILKTRFRYGDCAPMSFIELVERD 120

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BLAST of Cmc08g0219051 vs. ExPASy Swiss-Prot
Match: B3E858 (50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) OX=398767 GN=rplQ PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.8e-26
Identity = 59/110 (53.64%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 5   RKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAA 64
           R+LGR  +HR++M R MV+ L+ HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLLNHERIVTTDAKAKEIRSVAEKMITLGKRGDLHAHRQAA 67

Query: 65  AFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVD 115
           A++R  +++ KLF+ +A RYKDRAGGYTR ++   R+GDAA ++ IE V+
Sbjct: 68  AYIREKSVVTKLFSTIAPRYKDRAGGYTRIIKLGQRLGDAASLSVIELVE 117

[Close]

BLAST of Cmc08g0219051 vs. ExPASy Swiss-Prot
Match: A1ALW8 (50S ribosomal protein L17 OS=Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1) OX=338966 GN=rplQ PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.7e-26
Identity = 60/112 (53.57%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 5   RKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAA 64
           R+LGR  +HR +M R MV+ L  HE+I TT AKAKE+R +A+ M+ LGK G L + R AA
Sbjct: 8   RRLGRKTSHREAMFRNMVTSLFAHEKITTTDAKAKEIRSVAEKMITLGKRGDLHSTRIAA 67

Query: 65  AFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRE 117
           AF+R  +++ KLF+ +A RYK+RAGGYTR ++   R GDAAPM+ IE V+ E
Sbjct: 68  AFIREKSVVTKLFSTIAPRYKERAGGYTRIIKVGSRNGDAAPMSIIELVEEE 119

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BLAST of Cmc08g0219051 vs. ExPASy Swiss-Prot
Match: Q39XX8 (50S ribosomal protein L17 OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-25
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 5   RKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAA 64
           R+LGR  +HR++M R MV+  ++HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSFLEHERITTTDAKAKELRSIAEKMITLGKRGDLHAQRQAA 67

Query: 65  AFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELRQSK 124
           +++R   ++ KLF+ +A RYK+R GGYTR ++  IR GD AP++ IE V+ +   ++ K
Sbjct: 68  SYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDNAPLSVIELVEEQVNKKEKK 126

[Close]

BLAST of Cmc08g0219051 vs. ExPASy Swiss-Prot
Match: Q749B4 (50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-25
Identity = 65/148 (43.92%), Postives = 91/148 (61.49%), Query Frame = 0


Query: 5   RKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAA 64
           R+LGR  +HR++M R MV+ L  HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDLHAVRQAA 67

Query: 65  AFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELRQSKP 124
           +++R   ++ KLF+ +A RYK+R GGYTR ++  IR GD AP++ IE V+ + E +  K 
Sbjct: 68  SYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDCAPLSVIELVEEQFEKKVKKS 127

Query: 125 PNPPPPQRPPLDPWTRSRLSKQLAPPKE 153
               P Q     P          A P+E
Sbjct: 128 KPTAPAQAVATKPAVEETREAAAAQPQE 155

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BLAST of Cmc08g0219051 vs. ExPASy TrEMBL
Match: A0A5D3DPW3 (50S ribosomal protein L17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1230G00280 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.1e-80
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120
           RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR
Sbjct: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 160
           QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 159

[Close]

BLAST of Cmc08g0219051 vs. ExPASy TrEMBL
Match: A0A1S3B2I7 (50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103485266 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.1e-80
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120
           RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR
Sbjct: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 160
           QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 159

[Close]

BLAST of Cmc08g0219051 vs. ExPASy TrEMBL
Match: A0A0A0KFP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483480 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.7e-79
Identity = 154/159 (96.86%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120
           RRAA FVRGDA+LHKLFTELAYRYKDR GGYTRFLRTRIRVGDAAPMAYIEF+DRENELR
Sbjct: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 160
           QSKPPNPPPPQRPPLDPWTRSRLSKQ APPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of Cmc08g0219051 vs. ExPASy TrEMBL
Match: A0A6J1IN09 (uncharacterized protein LOC111478877 OS=Cucurbita maxima OX=3661 GN=LOC111478877 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 145/159 (91.19%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQ GKEG+L AA
Sbjct: 21  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKEGSLCAA 80

Query: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120
           R AAAFVRGD +LHKLFTELAYRYKDRAGGYTR LRTRIRVGDAAPMAYIEF+DRENELR
Sbjct: 81  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 140

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 160
           QSKPPNP PPQ+ P+DPWTRSRLSKQ APPKEIKSDSEI
Sbjct: 141 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 179

[Close]

BLAST of Cmc08g0219051 vs. ExPASy TrEMBL
Match: A0A6J1BS83 (uncharacterized protein LOC111005280 OS=Momordica charantia OX=3673 GN=LOC111005280 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.9e-72
Identity = 142/159 (89.31%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRP  HRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQ GKE +L AA
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAA 60

Query: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120
           RRAAAFVRGD +LHKLFTELAYRYKDRAGGYTR LRTRIRVGDAAPMAYIEF+DRENELR
Sbjct: 61  RRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 160
           QSKPPNP P Q+ PLDPWTRSRLSKQ APPKEIKSDSE+
Sbjct: 121 QSKPPNPQPQQKAPLDPWTRSRLSKQFAPPKEIKSDSEV 159

[Close]

BLAST of Cmc08g0219051 vs. TAIR 10
Match: AT5G09770.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 265.4 bits (677), Expect = 3.0e-71
Identity = 137/160 (85.62%), Postives = 146/160 (91.25%), Query Frame = 0


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPA HRMSMLRTMVSQLVKHERIETTV KAKEVRRLADNM+QLGKEG+LSAA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAA 60

Query: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120
           RRAA FVRGD +LHK+FTELA+RYKDRAGGYTR LRTRIRVGDAAPMAYIEF+DRENELR
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIK-SDSEI 160
           QSKP  P PPQR PLDPW RSRL++Q APPKE K  DSE+
Sbjct: 121 QSKPATPQPPQRVPLDPWERSRLTRQFAPPKEEKIPDSEL 160

[Close]

BLAST of Cmc08g0219051 vs. TAIR 10
Match: AT5G64650.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 261.2 bits (666), Expect = 5.6e-70
Identity = 134/160 (83.75%), Postives = 146/160 (91.25%), Query Frame = 0


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPA HRMSMLRTMVSQLV+HERIETTV KAKEVRRLADNM+QLGKEG+L+AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAA 60

Query: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120
           RRAA FVRGD +LHK+FTELA+RYKDRAGGYTR LRTRIRVGDAAPMAYIEF+DRENELR
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIK-SDSEI 160
           QSKP  P PP R PLDPW RSRL++Q APPKE K SDS++
Sbjct: 121 QSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTSDSDL 160

[Close]

BLAST of Cmc08g0219051 vs. TAIR 10
Match: AT3G54210.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 101.3 bits (251), Expect = 7.4e-22
Identity = 52/108 (48.15%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 6   KLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAAA 65
           KL RP   R ++LR + +QL+KH RI+TT A+A  +R+  D M+ L K+G+L   R+A  
Sbjct: 104 KLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALG 163

Query: 66  FVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFV 114
           ++    I+H LF E+  RY +R GGYTR +RT  R GD APMAYIE V
Sbjct: 164 YIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

The following BLAST results are available for this feature:

BLAST of Cmc08g0219051 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441029.1	4.3e-80	100.00	PREDICTED: 50S ribosomal protein L17 [Cucumis melo] >KAA0025538.1 50S ribosomal ...	[more]
XP_004148646.1	1.8e-78	96.86	uncharacterized protein LOC101221792 [Cucumis sativus] >KGN48368.1 hypothetical ...	[more]
XP_038880926.1	4.2e-75	93.71	50S ribosomal protein L17 [Benincasa hispida]	[more]
XP_022979157.1	2.3e-73	91.19	uncharacterized protein LOC111478877 [Cucurbita maxima]	[more]
XP_022132421.1	1.6e-71	89.31	uncharacterized protein LOC111005280 [Momordica charantia]	[more]

BLAST of Cmc08g0219051 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0L5Z9	1.5e-27	53.98	50S ribosomal protein L17 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
B3E858	2.8e-26	53.64	50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278...	[more]
A1ALW8	3.7e-26	53.57	50S ribosomal protein L17 OS=Pelobacter propionicus (strain DSM 2379 / NBRC 1038...	[more]
Q39XX8	1.1e-25	47.90	50S ribosomal protein L17 OS=Geobacter metallireducens (strain ATCC 53774 / DSM ...	[more]
Q749B4	1.1e-25	43.92	50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 1...	[more]

BLAST of Cmc08g0219051 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPW3	2.1e-80	100.00	50S ribosomal protein L17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B2I7	2.1e-80	100.00	50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103485266 PE=3 SV=1	[more]
A0A0A0KFP7	8.7e-79	96.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483480 PE=3 SV=1	[more]
A0A6J1IN09	1.1e-73	91.19	uncharacterized protein LOC111478877 OS=Cucurbita maxima OX=3661 GN=LOC111478877...	[more]
A0A6J1BS83	7.9e-72	89.31	uncharacterized protein LOC111005280 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of Cmc08g0219051 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09770.1	3.0e-71	85.63	Ribosomal protein L17 family protein	[more]
AT5G64650.1	5.6e-70	83.75	Ribosomal protein L17 family protein	[more]
AT3G54210.1	7.4e-22	48.15	Ribosomal protein L17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000456	Ribosomal protein L17	TIGRFAM	TIGR00059	TIGR00059	coord: 4..114 e-value: 3.0E-40 score: 135.0
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 17..113 e-value: 8.7E-33 score: 113.2
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 1..156
IPR000456	Ribosomal protein L17	HAMAP	MF_01368	Ribosomal_L17	coord: 2..113 score: 24.187284
IPR036373	Ribosomal protein L17 superfamily	GENE3D	3.90.1030.10	Ribosomal protein L17	coord: 1..113 e-value: 3.2E-45 score: 155.2
IPR036373	Ribosomal protein L17 superfamily	SUPERFAMILY	64263	Prokaryotic ribosomal protein L17	coord: 3..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..159
None	No IPR available	PANTHER	PTHR14413:SF22	BNAA09G06940D PROTEIN	coord: 1..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0219051.1	Cmc08g0219051.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome