Cmc08g0218581 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0218581
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	TFIIS N-terminal domain-containing protein
Location	CMiso1.1chr08: 6773346 .. 6776726 (+)
RNA-Seq Expression	Cmc08g0218581
Synteny	Cmc08g0218581

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATAGGGTCAGAGCTGCGAAAGGAAGGAAAAATCCTATCTGGATATAGGAACAAATTTCAACCCAACACGCTTCAATATTCTCTCTTTTTTTGTTCTTCATTCTCTTAATTCTTTGCTCAGATCAAATTTCCCGGCCGTCGTTTCATTTCAGAAACTTCGGTTTTCGTTTTCATGGTGATGTTTTCTTTCAGTTTCAATATTGATTGATTCTGTGAGCATCATGATATGATGATGATGATGATGATGATGATGATGATGATGATGATGGATGGATGAGACTATTAACTAAACCACAAACTCCAAAAGGAAAACAAAATTTCTCGACTTGGGTTTTGATTTTGGAACATTCTTCTTCTCTTCTTGTTCTACCTAATGTAAATTGACCCACTTCCAAAATTTTCCCTTTTTATTCTTTGAGGACGAAATTCCGGTTGTTCTTCGTTTTCTCAAGGAATATTCCGTAGTTTTTGATTTGGGTTCTTTTTAATTTATTGTTTCAGTTGCTTTTTGTGTCCTTAATTTTGTTTCGTGACTTGGGTTTCTGTAATTTTGACGGGTTGTCTTCTTCTCCTCCTCCTCCTCCTTCTTCCTTCCAGACGGCCACTGAGAGTTTGGATTCTGAAAACGATCGGTTAAACTTTTCTTTAGGATCGAATCAGATCTATTCTATGTCATTTGGGTTTCTTTTCTTTTTTGTTTCTTTCAAAAAAATTTCGTTAACGGATTATGACGATTTTGCTTTTCCATCACTGGGGTTTCTGTGCAATTTCTAGCGTTTTTCCTTCTCTTTTGTTTATTGTCAGAGTTTGGAAGTAGAATAATAAACTTCCTTCTTAGATCCGTTTCTGTTTCCAGAGTCCATTACTGAAAACAAGAACTACAAACGTTTTTTTCTTTTTCAGATTGTTTATCGGGAAGATAACCTTTCTCTTCTCTCAATCAATCTCCGATTCTTCCAATCGGACTCCTAAAAAAAATGGTTCGGTTGGATTTAGATGATTTCCGAACTATATTAGATACGGCCGGCGTCGATGTTTGGACTTTCATCGATACAGCTATGGAAGTCGCTTCATTAGATTACGGTAACCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCGTCTCGATGTCGGAACTGTGATACGGATCGCAACCATGACGGTCGCTCTAATGGCTGTGAAATCAAACAGGGTTCAGGTGAGGTTAAGGGAGCTTCCCCTTCAACGCCGCAGTTCGTTGTAGTGGAAGGGGATGACGATGGAGCAGACCCATATGCAGGATTGTTTGATGATGAACAGAAGAAGGTTCTGGAAATAAAGGAACAGCTCGAAATTCCTCACCAGGTCTTCTTCTTTTGATTCTGATTGTATAGAATGTTCTGATTGTTTTGATGGATTTTTTCTCTTAACTGTACCAATTTGTTGTTTTGGACTGTTTTAGCCTGAAGATGCTTTGGTTGAACTGCTTCAAAACTTAGCAGACATGGATATAACATTCCAAGCTCTTAAGGTAAATGTTTATGGGGTTTTTTTTTCTTGTTCTTTGTGTATGTAAATTCTTCTTCTTTTTCTTCTTCTCTGTTTCTTCATTCTTCTTGTTCTTGTTAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGGTGCATAATTTTTTACATATTTCATTGAATGGTTGATGCTTGTAAATTTCGGAAGAGTATAGTTGGTGAATTATCAGTTCAATTCAACTGTTTGTTAACTGTTTCAATTTGTTCTTCATCAGAAAATGGAAGGAGATTGTTGATGAATGGGTCAGGTTGAATCAACCTGGGGAGCAAACAGCTACACTCTTAGGTAGAGACCAGTTTGAACTTCATAATTCAATTCCTTCGTAAGGTTAAATCTTAGTCACTCTGTTGTAGAAAGATTTAGCTAAGAATGATTTCTACTGTCAACGACAGCTGATGGCGACTCACCCCAGCAAAAAGCTCCTCAAAATGGTTATCATCAGGTGAACTGAAATCATTCATCTTATTCGGTTTTAATGTTTGTTTTCTATATGCGAAGAGATCGAGAAGTTTATCCTTTTCATAGTTTCTTTGCCTCCATGTTTCTAATGTTTTTTTTTGTTGTTGTTGTTGTTATGCAGGTTCCTGATTTTGCATACTCTCCGAATCCACACAGTGAGTATTGAATTAGAGCTCTTATTGTTTCACTTGTCATCATGTACCACGGATTGATTTGGTTTCTCATGATCTCTCCCTTTTTCTTTGTTTTGTTAGATGGAGGTTCTGGGTCCGATAGAAATAACTCAGAACCGGAACCGAAGGGGAAATCCGTTCCAAGAAGAGATGCCCCGCCGAAACCAACACAACAAGCTCCAACGTCGTCTTTAACTCCACAAAATGTATGGTAACCAAATTAGAGTCTTTTAACTCTATGTTTGGTTGCCAAAAATGGAGGAAGAAAATTGAAACTTTCGATTCTTATGCTTCCGAAAACATAACAAACTTAACTCAAACTGGGATCAATTGTGTTGAAATTTGACAAAATTTGAGTGGTAGGTCTAAATTTTCTCAGGTCCCAGATGATATGCATGGTCTTACCTTACTTACAGTCAGCCAAATTTTGTCTTCAACAACTTAGCTGTTTTAGGAAAGTTTTTCTTATTATGTCAATTGAATTGATGGCCATTTGCAGAGGCAGAAAGAACAACAGAAAGAAGCAAATTTTGATTCCCAAAAGCTTGCATCAGCTCGAAAAAGGCTTCAAGAGAATTACAAAGAAGCTGAAAATGGTTTGGCCTACATCTAATTTCTTCTCTTTGATTTCGTTTCTGGCTCTTTTTAGAACAAACAAAACATACTAATTTCTGTTTGTTTCTTTTTTTGAAGCTAAAAGGCAAAGAACAATTCAAGTCATGGACATCCATGAGATTCCAAAGCCAAAGAATGCCTTCTTCTCAAAGAACAAAGGCAGCGGTGGTGGTTCTCAAGGCAGACACTGGTGATAGATAATTTGGCAAATGCAAACCACATCTTCTAAATTAGGGTTCTCCGTTATCATCGAATGAATCGGTTTATCATCATCCTTTCTATTTGTTACATCTTTTGATCATTAAATTCTTAACTTCTCTATCAAGTTTAAAAAGAGAATCAAAAACTACTTTTCGCGTAAATCTTCTCTTAATAAGCAATGCTATTACTGATATATTGTTAATCTACTGAGTCTTGAAACCTCACTGCCTGTTCTATATCATGTAAAACTCAAATAGGAAGGCCATATCTCTCTCTCTAGTCTCTGTCTTATGTCACAATTGTGCC

mRNA sequence

TTCATAGGGTCAGAGCTGCGAAAGGAAGGAAAAATCCTATCTGGATATAGGAACAAATTTCAACCCAACACGCTTCAATATTCTCTCTTTTTTTGTTCTTCATTCTCTTAATTCTTTGCTCAGATCAAATTTCCCGGCCGTCGTTTCATTTCAGAAACTTCGGTTTTCGTTTTCATGGTGATGTTTTCTTTCAGTTTCAATATTGATTGATTCTGTGAGCATCATGATATGATGATGATGATGATGATGATGATGATGATGATGATGATGGATGGATGAGACTATTAACTAAACCACAAACTCCAAAAGGAAAACAAAATTTCTCGACTTGGGTTTTGATTTTGGAACATTCTTCTTCTCTTCTTGTTCTACCTAATGTAAATTGACCCACTTCCAAAATTTTCCCTTTTTATTCTTTGAGGACGAAATTCCGGTTGTTCTTCGTTTTCTCAAGGAATATTCCGTAGTTTTTGATTTGGGTTCTTTTTAATTTATTGTTTCAGTTGCTTTTTGTGTCCTTAATTTTGTTTCGTGACTTGGGTTTCTGTAATTTTGACGGGTTGTCTTCTTCTCCTCCTCCTCCTCCTTCTTCCTTCCAGACGGCCACTGAGAGTTTGGATTCTGAAAACGATCGGTTAAACTTTTCTTTAGGATCGAATCAGATCTATTCTATGTCATTTGGGTTTCTTTTCTTTTTTGTTTCTTTCAAAAAAATTTCGTTAACGGATTATGACGATTTTGCTTTTCCATCACTGGGGTTTCTGTGCAATTTCTAGCGTTTTTCCTTCTCTTTTGTTTATTGTCAGAGTTTGGAAGTAGAATAATAAACTTCCTTCTTAGATCCGTTTCTGTTTCCAGAGTCCATTACTGAAAACAAGAACTACAAACGTTTTTTTCTTTTTCAGATTGTTTATCGGGAAGATAACCTTTCTCTTCTCTCAATCAATCTCCGATTCTTCCAATCGGACTCCTAAAAAAAATGGTTCGGTTGGATTTAGATGATTTCCGAACTATATTAGATACGGCCGGCGTCGATGTTTGGACTTTCATCGATACAGCTATGGAAGTCGCTTCATTAGATTACGGTAACCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCGTCTCGATGTCGGAACTGTGATACGGATCGCAACCATGACGGTCGCTCTAATGGCTGTGAAATCAAACAGGGTTCAGGTGAGGTTAAGGGAGCTTCCCCTTCAACGCCGCAGTTCGTTGTAGTGGAAGGGGATGACGATGGAGCAGACCCATATGCAGGATTGTTTGATGATGAACAGAAGAAGGTTCTGGAAATAAAGGAACAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGAACTGCTTCAAAACTTAGCAGACATGGATATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGAAAATGGAAGGAGATTGTTGATGAATGGGTCAGGTTGAATCAACCTGGGGAGCAAACAGCTACACTCTTAGCTGATGGCGACTCACCCCAGCAAAAAGCTCCTCAAAATGGTTATCATCAGGTTCCTGATTTTGCATACTCTCCGAATCCACACAATGGAGGTTCTGGGTCCGATAGAAATAACTCAGAACCGGAACCGAAGGGGAAATCCGTTCCAAGAAGAGATGCCCCGCCGAAACCAACACAACAAGCTCCAACGTCGTCTTTAACTCCACAAAATAGGCAGAAAGAACAACAGAAAGAAGCAAATTTTGATTCCCAAAAGCTTGCATCAGCTCGAAAAAGGCTTCAAGAGAATTACAAAGAAGCTGAAAATGCTAAAAGGCAAAGAACAATTCAAGTCATGGACATCCATGAGATTCCAAAGCCAAAGAATGCCTTCTTCTCAAAGAACAAAGGCAGCGGTGGTGGTTCTCAAGGCAGACACTGGTGATAGATAATTTGGCAAATGCAAACCACATCTTCTAAATTAGGGTTCTCCGTTATCATCGAATGAATCGGTTTATCATCATCCTTTCTATTTGTTACATCTTTTGATCATTAAATTCTTAACTTCTCTATCAAGTTTAAAAAGAGAATCAAAAACTACTTTTCGCGTAAATCTTCTCTTAATAAGCAATGCTATTACTGATATATTGTTAATCTACTGAGTCTTGAAACCTCACTGCCTGTTCTATATCATGTAAAACTCAAATAGGAAGGCCATATCTCTCTCTCTAGTCTCTGTCTTATGTCACAATTGTGCC

Coding sequence (CDS)

ATGGTTCGGTTGGATTTAGATGATTTCCGAACTATATTAGATACGGCCGGCGTCGATGTTTGGACTTTCATCGATACAGCTATGGAAGTCGCTTCATTAGATTACGGTAACCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCGTCTCGATGTCGGAACTGTGATACGGATCGCAACCATGACGGTCGCTCTAATGGCTGTGAAATCAAACAGGGTTCAGGTGAGGTTAAGGGAGCTTCCCCTTCAACGCCGCAGTTCGTTGTAGTGGAAGGGGATGACGATGGAGCAGACCCATATGCAGGATTGTTTGATGATGAACAGAAGAAGGTTCTGGAAATAAAGGAACAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGAACTGCTTCAAAACTTAGCAGACATGGATATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGAAAATGGAAGGAGATTGTTGATGAATGGGTCAGGTTGAATCAACCTGGGGAGCAAACAGCTACACTCTTAGCTGATGGCGACTCACCCCAGCAAAAAGCTCCTCAAAATGGTTATCATCAGGTTCCTGATTTTGCATACTCTCCGAATCCACACAATGGAGGTTCTGGGTCCGATAGAAATAACTCAGAACCGGAACCGAAGGGGAAATCCGTTCCAAGAAGAGATGCCCCGCCGAAACCAACACAACAAGCTCCAACGTCGTCTTTAACTCCACAAAATAGGCAGAAAGAACAACAGAAAGAAGCAAATTTTGATTCCCAAAAGCTTGCATCAGCTCGAAAAAGGCTTCAAGAGAATTACAAAGAAGCTGAAAATGCTAAAAGGCAAAGAACAATTCAAGTCATGGACATCCATGAGATTCCAAAGCCAAAGAATGCCTTCTTCTCAAAGAACAAAGGCAGCGGTGGTGGTTCTCAAGGCAGACACTGGTGA

Protein sequence

MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSDRNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW

Homology

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BLAST of Cmc08g0218581 vs. NCBI nr
Match: XP_008440997.1 (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cucumis melo] >KAA0025564.1 putative mediator of RNA polymerase II transcription subunit 26c [Cucumis melo var. makuwa] >TYK12438.1 putative mediator of RNA polymerase II transcription subunit 26c [Cucumis melo var. makuwa])

HSP 1 Score: 682.2 bits (1759), Expect = 2.4e-192
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of Cmc08g0218581 vs. NCBI nr
Match: XP_004141981.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucumis sativus])

HSP 1 Score: 670.2 bits (1728), Expect = 9.3e-189
Identity = 341/345 (98.84%), Postives = 341/345 (98.84%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQGSGEVK ASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIP QPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHL
Sbjct: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDA PKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of Cmc08g0218581 vs. NCBI nr
Match: XP_038882890.1 (probable mediator of RNA polymerase II transcription subunit 26c [Benincasa hispida])

HSP 1 Score: 664.5 bits (1713), Expect = 5.1e-187
Identity = 335/345 (97.10%), Postives = 337/345 (97.68%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQ  GEVKGASPSTPQFV V+GDDDG DP+ GLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQSPGEVKGASPSTPQFVAVDGDDDGVDPHGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPED LVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDGLVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDAPPKP Q APTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPAQPAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of Cmc08g0218581 vs. NCBI nr
Match: XP_023544969.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 639.0 bits (1647), Expect = 2.3e-179
Identity = 323/345 (93.62%), Postives = 329/345 (95.36%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120
           RNCDTDR +DGRSNGCEIKQ   E K ASPSTPQFVVVEGDD+G DPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATL+AD DSPQQK PQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADSDSPQQKVPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNN EPEPKGKSVPRRDAPPKP Q AP SS TPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNVEPEPKGKSVPRRDAPPKPAQPAPMSSYTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAK+QRTIQVMDIHEIPKPKN FFSKNKG+GGGSQGRHW
Sbjct: 301 NYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 345

[Close]

BLAST of Cmc08g0218581 vs. NCBI nr
Match: XP_022950583.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita moschata] >KAG7034423.1 putative mediator of RNA polymerase II transcription subunit 26c, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 637.5 bits (1643), Expect = 6.7e-179
Identity = 322/345 (93.33%), Postives = 329/345 (95.36%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120
           RNCDTDR +DGRSNGCEIKQ   E K ASPSTPQFVVVEGDD+G DPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATL+ADGDSPQQK  QNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVTQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNN EPEPKGKSVPRRDAPPKP Q AP SS TPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNVEPEPKGKSVPRRDAPPKPAQPAPMSSYTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAK+QRTIQVMDIHEIPKPKN FFSKNKG+GGGSQGRHW
Sbjct: 301 NYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 345

[Close]

BLAST of Cmc08g0218581 vs. ExPASy Swiss-Prot
Match: F4KFC7 (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana OX=3702 GN=MED26C PE=1 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.9e-92
Identity = 204/363 (56.20%), Postives = 252/363 (69.42%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VASLDYG +LK RRD IVERLYA TS  ++CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  D-----------TDRNHDGR-SNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGL 123
           D             R ++GR     E +   G    A     +  V   DDD  DP+AGL
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPFAGL 120

Query: 124 FDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSN 183
           FDDEQK ++EIKE+LE P   E++LVELLQNL DMDITFQAL+ETDIGRHVNR+RKH SN
Sbjct: 121 FDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSN 180

Query: 184 DVRRLVKHLVRKWKEIVDEWVRLNQPGE-QTATLLADGDSPQQKAPQNG-YHQVPDFAYS 243
           +VRRL K LV+KWKE VDEWV+ NQPG+ +  +L+AD DSP QKA  NG   QVPDF YS
Sbjct: 181 NVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGYS 240

Query: 244 PNPHNGGSGSDRNN--SEPEPKGKSV---PRRD--APPKPTQQAPTSSLTPQNRQKEQQK 303
           P P NG S S +N+  +EPE K + V   PRR+  +P KP++ +P+    P+++   + K
Sbjct: 241 PVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQQTIPRDK---EHK 300

Query: 304 EANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQG 346
           E +FD     +ARKRLQ+NY++AENAK+QRTIQVMDIH+IPKPK   F   KG G    G
Sbjct: 301 EVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKG-GSSQGG 353

[Close]

BLAST of Cmc08g0218581 vs. ExPASy Swiss-Prot
Match: Q9FHK9 (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana OX=3702 GN=MED26B PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.9e-15
Identity = 118/431 (27.38%), Postives = 181/431 (42.00%), Query Frame = 0


Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCD 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L++     +RC  CD
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCR--VNRCVGCD 66

Query: 66  -----------TDRNHDGRSNG-------CEIKQGSGEVKGASPSTPQFVVVEG----DD 125
                       +R   G   G        E+  GS E K  S       +V      + 
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEA 126

Query: 126 DGADPYAGLFDDEQKKVLEIKE-QLEIPHQPEDALVELLQNLADMDITFQALKETDIGRH 185
           +        F    K+V  IKE  L    +P   L++ L++L  M +    LK T+IG+ 
Sbjct: 127 EALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIGKA 186

Query: 186 VNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQ-------PGEQTATLLADGDSPQQK 245
           VN LRKHSS+ +R+L K L+ +WKE+VD+WV   +         E     + D +     
Sbjct: 187 VNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEEAFPS 246

Query: 246 AP---------QNGY---HQVPDFAYSPNP-----HNGGSGSDR---NNSEPEPKGKSVP 305
            P          NG+   H      +  NP     HN     +R   N ++ +P+G  + 
Sbjct: 247 LPYDVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQNIAKRKPEGTQMR 306

Query: 306 RRDAP---------------PKPTQQAPTSSL---------------------TPQNRQ- 346
            +DAP                +P +Q+    +                     T Q R+ 
Sbjct: 307 IQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQKRKA 366

[Close]

BLAST of Cmc08g0218581 vs. ExPASy Swiss-Prot
Match: F4J4Y5 (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana OX=3702 GN=MED26A PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.5e-13
Identity = 103/389 (26.48%), Postives = 168/389 (43.19%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF--SCKVSRCIGC 67

Query: 64  D-TDRNHDGRSNGCEI-KQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVLE 123
           D  + +  G     EI   G G  +G S          G   G    A +  DE  ++ +
Sbjct: 68  DHLELSIAGDEAAVEIVGVGGGGDRGDS----------GVATGEGEEASVSVDEVMRIRD 127

Query: 124 IKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLV 183
           I    +   + +  L+E L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L K L 
Sbjct: 128 ILSNKD--DEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLAKTLF 187

Query: 184 RKWKEIVDEWVRLNQPGEQTAT-----LLADGDSPQQKAPQNGYHQVPDFAYSPN----- 243
            +WK +VD+W  +N P E   T      L      +++A  +  H +  +A  PN     
Sbjct: 188 AEWKRLVDQW--MNTPEEMAGTEGTPESLNLSVIDEEEAFPSPPHDLDIYAPEPNGFELS 247

Query: 244 ------------PHNGGSGSDRNNSEP---EPKG-------------KSVPRRDAPPKPT 303
                        H+  S  +R +       PKG             +   R +A  +P 
Sbjct: 248 QILDCLDCDGNPRHSVESKHERKSQSSAGRRPKGTNDANVVGRYCNDQQTRREEADVRPM 307

Query: 304 QQAPTSSLTPQNRQKEQQKE-----------ANFDSQKLAS-----------------AR 325
           + + T  + P+ + K+ +++                +KLA                  A+
Sbjct: 308 KHSATDVVEPKRQTKQSREQMVSAIQRKPTAVTEQKRKLAGPQQDKLKALDPDSKFEFAK 367

[Close]

BLAST of Cmc08g0218581 vs. ExPASy Swiss-Prot
Match: Q96MN5 (Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Homo sapiens OX=9606 GN=TCEANC2 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 3.5e-05
Identity = 31/95 (32.63%), Postives = 49/95 (51.58%), Query Frame = 0


Query: 102 DDGADPYAGLFDDEQKKVLEI------KEQLEIPHQPEDALVELLQNLADMDITFQALKE 161
           D G   Y     +  K+V+ +      K  LE+P Q ++ LVE LQ L     + + LK 
Sbjct: 19  DSGGKVYKQATIESLKRVVVVEDIKRWKTMLELPDQTKENLVEALQELKKKIPSREVLKS 78

Query: 162 TDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDE 191
           T IG  VN++RKHS ++V  L + +  +WK   ++
Sbjct: 79  TRIGHTVNKMRKHSDSEVASLAREVYTEWKTFTEK 113

[Close]

BLAST of Cmc08g0218581 vs. ExPASy Swiss-Prot
Match: B0UYI1 (Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Danio rerio OX=7955 GN=tceanc2 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.3e-04
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 123 KEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSN-DVRRLVKHLV 182
           K  LE+P QP++ ++E L+ L     + + LK T IG  VN LRKHS + +++ L K + 
Sbjct: 45  KSILELPGQPKENMIEALKELDKKVPSREVLKSTRIGHTVNNLRKHSDDPEIKSLAKEVY 104

Query: 183 RKWKEIVDE 191
           + W+  ++E
Sbjct: 105 KHWRTFIEE 113

[Close]

BLAST of Cmc08g0218581 vs. ExPASy TrEMBL
Match: A0A5A7SIU9 (Putative mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00130 PE=4 SV=1)

HSP 1 Score: 682.2 bits (1759), Expect = 1.1e-192
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of Cmc08g0218581 vs. ExPASy TrEMBL
Match: A0A1S3B2G2 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo OX=3656 GN=LOC103485244 PE=4 SV=1)

HSP 1 Score: 682.2 bits (1759), Expect = 1.1e-192
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of Cmc08g0218581 vs. ExPASy TrEMBL
Match: A0A0A0KHV9 (TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G486670 PE=4 SV=1)

HSP 1 Score: 670.2 bits (1728), Expect = 4.5e-189
Identity = 341/345 (98.84%), Postives = 341/345 (98.84%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQGSGEVK ASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIP QPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHL
Sbjct: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDA PKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of Cmc08g0218581 vs. ExPASy TrEMBL
Match: A0A6J1GFA3 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita moschata OX=3662 GN=LOC111453638 PE=4 SV=1)

HSP 1 Score: 637.5 bits (1643), Expect = 3.2e-179
Identity = 322/345 (93.33%), Postives = 329/345 (95.36%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120
           RNCDTDR +DGRSNGCEIKQ   E K ASPSTPQFVVVEGDD+G DPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATL+ADGDSPQQK  QNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVTQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNN EPEPKGKSVPRRDAPPKP Q AP SS TPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNVEPEPKGKSVPRRDAPPKPAQPAPMSSYTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAK+QRTIQVMDIHEIPKPKN FFSKNKG+GGGSQGRHW
Sbjct: 301 NYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 345

[Close]

BLAST of Cmc08g0218581 vs. ExPASy TrEMBL
Match: A0A6J1ILB4 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita maxima OX=3661 GN=LOC111478070 PE=4 SV=1)

HSP 1 Score: 630.6 bits (1625), Expect = 4.0e-177
Identity = 322/346 (93.06%), Postives = 329/346 (95.09%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120
           RNCDTDR +DGRSNGCEIKQ   E K ASPSTPQFVVVEGDD+G DPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATL+ADGDSPQQK  QNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAP-TSSLTPQNRQKEQQKEANFDSQKLASARKRLQ 300
           RNN EPEPKGKSVPRRDA PKP Q AP +SS TPQNRQKEQQKEANFDSQKLASARKRLQ
Sbjct: 241 RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300

Query: 301 ENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           ENYKEAENAK+QRTIQVMDIHEIPKPKN FFSKNKG+GGGSQGRHW
Sbjct: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 346

[Close]

BLAST of Cmc08g0218581 vs. TAIR 10
Match: AT5G09850.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 340.1 bits (871), Expect = 2.1e-93
Identity = 204/363 (56.20%), Postives = 252/363 (69.42%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VASLDYG +LK RRD IVERLYA TS  ++CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  D-----------TDRNHDGR-SNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGL 123
           D             R ++GR     E +   G    A     +  V   DDD  DP+AGL
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPFAGL 120

Query: 124 FDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSN 183
           FDDEQK ++EIKE+LE P   E++LVELLQNL DMDITFQAL+ETDIGRHVNR+RKH SN
Sbjct: 121 FDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSN 180

Query: 184 DVRRLVKHLVRKWKEIVDEWVRLNQPGE-QTATLLADGDSPQQKAPQNG-YHQVPDFAYS 243
           +VRRL K LV+KWKE VDEWV+ NQPG+ +  +L+AD DSP QKA  NG   QVPDF YS
Sbjct: 181 NVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGYS 240

Query: 244 PNPHNGGSGSDRNN--SEPEPKGKSV---PRRD--APPKPTQQAPTSSLTPQNRQKEQQK 303
           P P NG S S +N+  +EPE K + V   PRR+  +P KP++ +P+    P+++   + K
Sbjct: 241 PVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQQTIPRDK---EHK 300

Query: 304 EANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQG 346
           E +FD     +ARKRLQ+NY++AENAK+QRTIQVMDIH+IPKPK   F   KG G    G
Sbjct: 301 EVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKG-GSSQGG 353

[Close]

BLAST of Cmc08g0218581 vs. TAIR 10
Match: AT5G05140.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 84.3 bits (207), Expect = 2.0e-16
Identity = 118/431 (27.38%), Postives = 181/431 (42.00%), Query Frame = 0


Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCD 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L++     +RC  CD
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCR--VNRCVGCD 66

Query: 66  -----------TDRNHDGRSNG-------CEIKQGSGEVKGASPSTPQFVVVEG----DD 125
                       +R   G   G        E+  GS E K  S       +V      + 
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEA 126

Query: 126 DGADPYAGLFDDEQKKVLEIKE-QLEIPHQPEDALVELLQNLADMDITFQALKETDIGRH 185
           +        F    K+V  IKE  L    +P   L++ L++L  M +    LK T+IG+ 
Sbjct: 127 EALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIGKA 186

Query: 186 VNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQ-------PGEQTATLLADGDSPQQK 245
           VN LRKHSS+ +R+L K L+ +WKE+VD+WV   +         E     + D +     
Sbjct: 187 VNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEEAFPS 246

Query: 246 AP---------QNGY---HQVPDFAYSPNP-----HNGGSGSDR---NNSEPEPKGKSVP 305
            P          NG+   H      +  NP     HN     +R   N ++ +P+G  + 
Sbjct: 247 LPYDVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQNIAKRKPEGTQMR 306

Query: 306 RRDAP---------------PKPTQQAPTSSL---------------------TPQNRQ- 346
            +DAP                +P +Q+    +                     T Q R+ 
Sbjct: 307 IQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQKRKA 366

[Close]

BLAST of Cmc08g0218581 vs. TAIR 10
Match: AT3G10820.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 79.3 bits (194), Expect = 6.5e-15
Identity = 63/202 (31.19%), Postives = 99/202 (49.01%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF--SCKVSRCIGC 67

Query: 64  D-TDRNHDGRSNGCEI-KQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVLE 123
           D  + +  G     EI   G G  +G S          G   G    A +  DE  ++ +
Sbjct: 68  DHLELSIAGDEAAVEIVGVGGGGDRGDS----------GVATGEGEEASVSVDEVMRIRD 127

Query: 124 IKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLV 183
           I    +   + +  L+E L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L K L 
Sbjct: 128 ILSNKD--DEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLAKTLF 187

Query: 184 RKWKEIVDEWVRLNQPGEQTAT 204
            +WK +VD+W  +N P E   T
Sbjct: 188 AEWKRLVDQW--MNTPEEMAGT 193

[Close]

BLAST of Cmc08g0218581 vs. TAIR 10
Match: AT3G10820.2 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-14
Identity = 103/389 (26.48%), Postives = 168/389 (43.19%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF--SCKVSRCIGC 67

Query: 64  D-TDRNHDGRSNGCEI-KQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVLE 123
           D  + +  G     EI   G G  +G S          G   G    A +  DE  ++ +
Sbjct: 68  DHLELSIAGDEAAVEIVGVGGGGDRGDS----------GVATGEGEEASVSVDEVMRIRD 127

Query: 124 IKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLV 183
           I    +   + +  L+E L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L K L 
Sbjct: 128 ILSNKD--DEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLAKTLF 187

Query: 184 RKWKEIVDEWVRLNQPGEQTAT-----LLADGDSPQQKAPQNGYHQVPDFAYSPN----- 243
            +WK +VD+W  +N P E   T      L      +++A  +  H +  +A  PN     
Sbjct: 188 AEWKRLVDQW--MNTPEEMAGTEGTPESLNLSVIDEEEAFPSPPHDLDIYAPEPNGFELS 247

Query: 244 ------------PHNGGSGSDRNNSEP---EPKG-------------KSVPRRDAPPKPT 303
                        H+  S  +R +       PKG             +   R +A  +P 
Sbjct: 248 QILDCLDCDGNPRHSVESKHERKSQSSAGRRPKGTNDANVVGRYCNDQQTRREEADVRPM 307

Query: 304 QQAPTSSLTPQNRQKEQQKE-----------ANFDSQKLAS-----------------AR 325
           + + T  + P+ + K+ +++                +KLA                  A+
Sbjct: 308 KHSATDVVEPKRQTKQSREQMVSAIQRKPTAVTEQKRKLAGPQQDKLKALDPDSKFEFAK 367

The following BLAST results are available for this feature:

BLAST of Cmc08g0218581 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440997.1	2.4e-192	100.00	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cuc...	[more]
XP_004141981.1	9.3e-189	98.84	probable mediator of RNA polymerase II transcription subunit 26c [Cucumis sativu...	[more]
XP_038882890.1	5.1e-187	97.10	probable mediator of RNA polymerase II transcription subunit 26c [Benincasa hisp...	[more]
XP_023544969.1	2.3e-179	93.62	probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita pepo...	[more]
XP_022950583.1	6.7e-179	93.33	probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita mosc...	[more]

BLAST of Cmc08g0218581 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KFC7	2.9e-92	56.20	Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ...	[more]
Q9FHK9	2.9e-15	27.38	Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ...	[more]
F4J4Y5	3.5e-13	26.48	Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ...	[more]
Q96MN5	3.5e-05	32.63	Transcription elongation factor A N-terminal and central domain-containing prote...	[more]
B0UYI1	1.3e-04	36.23	Transcription elongation factor A N-terminal and central domain-containing prote...	[more]

BLAST of Cmc08g0218581 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SIU9	1.1e-192	100.00	Putative mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo...	[more]
A0A1S3B2G2	1.1e-192	100.00	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo...	[more]
A0A0A0KHV9	4.5e-189	98.84	TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4...	[more]
A0A6J1GFA3	3.2e-179	93.33	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita mo...	[more]
A0A6J1ILB4	4.0e-177	93.06	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita ma...	[more]

BLAST of Cmc08g0218581 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09850.1	2.1e-93	56.20	Transcription elongation factor (TFIIS) family protein	[more]
AT5G05140.1	2.0e-16	27.38	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.1	6.5e-15	31.19	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.2	2.5e-14	26.48	Transcription elongation factor (TFIIS) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 288..315
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..319
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..279
None	No IPR available	PANTHER	PTHR47210:SF1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED	coord: 4..345
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 116..189 e-value: 1.5796E-19 score: 79.6598
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 119..190 e-value: 1.7E-9 score: 47.6
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 113..202 e-value: 1.7E-23 score: 84.2
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 117..198
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 139..188 e-value: 7.1E-13 score: 48.4
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 114..191 score: 25.527599
IPR044790	Mediator of RNA polymerase II transcription subunit 26c-like	PANTHER	PTHR47210	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED	coord: 4..345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0218581.1	Cmc08g0218581.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus