Cmc08g0218251 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0218251
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerases IV and V subunit 4-like
Location	CMiso1.1chr08: 6589285 .. 6593572 (-)
RNA-Seq Expression	Cmc08g0218251
Synteny	Cmc08g0218251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCAAAAACTTCTTTTTGCAAATTTCTTTTCCAATTACAATTTATAATTAGAGAATTGAAAGCTTGAAACGAAGCGAAGGCTCGTCGTCATTCGGTTGCGCAAGACGAAAGGGAAGATTCTCCCATTTTCCGATCAACCCAACAGGTCCTTTTCTTCTTCAACTCCGCCATTGCATTATTCTCATCTTCCTTCTTATTTTACTCTTCTCTTCTCTACTTTTTGTCGATTCTTTTTCCCTGTTTTTCTCTTTTCGTTTCAAGGAAATATAGTGTTTCATTTCAGTTTCCAATTTGTAAACTAACATAAACATCTCATGAATGCCTTAGTTTTGATTTTCTGAAGTAGGTTTTTCTTGGAGCTTAATCGAACTAAACCAGAGGAACAAATTTTCAGTAATGTCGGAGAAAGGCGAAAAGGGTTTTTCAGTGCAAAAAAAACCTGCAAAGTCTTCCCTCAAGTCTTCCGCTCTCAAGGATGGTTCGTATCGTTAATATCTTTTCACTCTACCGGGAATGGGAGGTTGTGTGTTGTTTTCAACTTCATGCATCTGTTCTGTTGCCCCCATTGATTCAACTGAATTCACTCTTGTCCAAATTACTTATCAATCTTCGAGGAAGATTTTGTTTTGAAAATCTCTTTGATTTTAAAGCTACTATTATAAATGTGAACTGAAAATTAGTGAATCCTTGTTGCTTCCAGCTTTCCATGTGATTATGCTGGTAGTTTGCTAAATTGATCATGGGTCACAGGCATACATCATTAAATATAATTAGTTATGTTTTCTATCAAATGATTCCTAACTTGTTGCATAGCTTCTCTAAAAGGAAAGGATGATAGTTTGTCAAAGCTAAAGAAGGGAAGGAAAGTCCAGTTCGATGCTCAAGGTCAATATCCTTTTTTAATCCTTCTAGGAGTGATACTTTTTGTGTTATTCAAAATACAAATCACTTGATGTGCTAATGTTGAATAAGTTATATGTCAGAAGAATGTGCTTACCATATAAAACTACTTAATTCGGAAATAATTGTACATACAGGATCAGTTGATGCGCCAAATACTTTTTCGATGAAATACAGTGGCAAAAATGGTACTAATTTTAAATGTTTATTTTATTTTCTATTTTATTTACTCTAATCTTTCTACTGACTTCATAAGGCTCTTCTTTGTTATTTTTCTGTTAATACAAATTCTCTCCTTTCCAATTGTGGCTTGTAGGTGACATGGGTAAAGGAGGAAAAGGTGCAAACACGAAGGCTTCTGTTGCAAAGGAACCCCAATCACTAGAATTAAAGATTGAGCAAGGTGGTTATTGCCTTGACTTTGAATATGGTTTTATTCAGTATCGCATGGTCATGAATTATTCGCTTTTGCTGTTATTCATATCATGGAACGTCGGTTTTGCCTTACTCTGTATGGCAACTGGCTGTTTTCTCTTTTCTGTTCTGAGGCTGTATTTATTTTTTTTTTTTACTTTTATTCTTTTACTGATGGAATTAAGAGAAGTATGTCTCCTAGTGTGAAATTGTTCATTTGATGGAATTGTTGGAGGGTGTTTGTATCCTGTTTATATTGTGCCTTTTTTTCTTTTTCATTTTGGTTTTAAATTGGTGTGCAGAACTGCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAAGCTGCACAACTTTTACAGGGAATCCAAGATCAGATGGTTTTTCTATCCGCTGATCCAACCATAAAAATTCCCACGTAAGTGAATATTAGTAACCATTTATTTGTAAGAATAATTTCCCATGCTTACAAACTTGGTTTGCTTTCATCTTTTAGGTCATTTGATAGGGGATTGCAATATGCTAAAAGAGCCAACCACTATGTAAATGCGGAGTCAGTTAGACCAGTTCTTGAGTATCCTTGTTTTGATGAATAGGCCATTAGATTGTATTCCTAATTTCTTTTTTATTTTTCTTTTTGGATGGTATCAATTTATATACTACTGTGGAAGTATGCTTTTGCACCAACCCAGCACTCCTGGTGTGCTGTATGGTACTTGTTTCATTTGTCTTTTTATTTGAGTGCTTAACTGAAAATTCTAGAACCCTCAAGAAATATGGCATAACAGATAGTGAGGTAGTTATATCTATCTTCTTTTTTGCCTTTCTCAAAATTAGTTCTTCGAATGATGAACTGACTCGGTATTAATATTGATTCAGATATGTGTGATTGCTAATGTCTGCCCAGACACTACTGATGAAGTTTTTGCTCTTCTTCCATCCTTGAAGGTACGATTTATCTGTCCGTATTTTCTGTAATATCACCATGCCATATGAATATACTTAAAACACATTTTTTTCCTGCCTATCTGAGCATCGCTAAAGTGGCCAAGGCATTGTACCCTCAATCAAAAGGTTAGAGGGTTAAATTGTCACCTCTATTAGTTGAACTTAAAAATTTATTTAGTTTCTATACTTATTCTGCTATTTGGTCCTCTTGTATTTCCTTAGATCAAGTAGGTCGTCCTAGCTTATAATTACTTGACAAGAATAATTTAGTGATTTACTAATGGGTAAAAAATATGCACGTGTGCTGAATTTCAACACAATATGAAAATATTTCGTTTCCTATCACCCTAAAAAAAGTGAAAATATATAATATAAGAACTGAAAATGCAAGGGTAAAACAAAAATTGAAGACTTTAAAAGAGCAATGGTAAAATAATTATAAATGGGTCATAACCTTTTTCAGTCAACTTGGTATTGCCTCCCTCTTAATATATTGTAATTCTAAAAGTATATTCAAAATATTTAAGGTTTTGTAGCTTCTCTTGTTTGCCCTCCCAAAAACTTTAGGATTCAATATTATATTTATAGAAAGTTAGATCGAAAAGAATTTGCTCCTCTCTAAGATTTTTTCTTTTCTTTTTTTGGATTTTTCTTGTTCGGAGGTAATCCTTTTGAACTGAAACTATTCTTCAAATGTTTCCAAGTGTTAGTAAGGACCTTAAAAATACATTTAAATATGTGTAGCCTACATAGATGGGTTATGTATTGGTTATGCATCATTGGAATTTTGTTGCTTTTGATTATTGTTTATTCATTTATTTGATTCCAACATGGTTACATACAAAGCAGAACAAAAGAAGCAAGCTAAGTGAACCTCTCAACAATGTCTTGAGTGAGCTAGCCAAGGTAAAATCATCCTGAACTGAAGCCATCGAGTTGCTTGCTGTTGCTGTTGCTCAGGTCCGGTTGCCCTCTCCCCTTCCTGTGAAAATTGTTTTATGGCATTTGAAAATTAGGACCTTATCTTTTCAATGGCTTTCAATAGATATAACTTCGGGGGAAGTAAAGTATTAGCCCATCGGAATATTTTGTTCTTGAAGAGATCTGTATTTGCTACTGGCATTGTTGATATAGTGTAGAAATATGGCTTAACTTTACTGAGAATGCATTTCCCACCTGAATCAACTCTGATAGCCTGAAAATTAAACTAGAAAACTTAGATAACTTATAGATATTAAATGTCAATTATTATATGCTTTTTGCTATTAGAGTACAAGATAATACTTTCAAGATTTTCAAATGCTCCATTCTAACTAAATGTACTTTCCGTTTCCGATAAGAAGAAAAATTTACGTGGAGATTATAAAGACCAACGATGTCATTTGGAATGCCCATTGACTCTCCAATCCACAAACGTTATTCTAACAAAAGAATTGTTCCGATATCTCATGAACTACATTCTTTCACTAAAACCACTAGACAATTCATCAGCCTTTTCCATTTCCTAATTATATTGCGATCAATAGAAACAGGATCCGGCTGAATTCTTGGACTTGTTGTTGCCATGGAAAATTGTTGATCCAAGTTCTGGGCAGTGTTTTGTTCATGTAATGAACGTTTATCCTTATTATTGTGTTCTTGGATGTCAGTTTCTTCACGATTGATCTCAGAATACTTCAACAAAGGGTTCTTCAATCAGCTTCTGGGTTAGAGCTTCATCAACTTTAAATGAGTTGTCCAGAATTGATCATTCCTCTCCCCTCCTTGTTCTTTCTGATTCACTGAACCTCAATTCGTCCATTGAAATCAATCCACACTGAGCTTTCTTGCTAGAATTTCTTGACGATTGGTCATACATTTTAACACAATCTTTAACTATATGCCCAATTATACCACAATTGAAACAAAAATCCGGTAACTTTTCATATCTTATTGGAAATCAACTTTCTTTCATTGAACTAGGGGTGAGTATGATAAATCGAAAAACCGAGTCGATTAATCAAATCGAAGTCGGTTGACGGAA

mRNA sequence

CCCCAAAAACTTCTTTTTGCAAATTTCTTTTCCAATTACAATTTATAATTAGAGAATTGAAAGCTTGAAACGAAGCGAAGGCTCGTCGTCATTCGGTTGCGCAAGACGAAAGGGAAGATTCTCCCATTTTCCGATCAACCCAACAGGTTTTTCTTGGAGCTTAATCGAACTAAACCAGAGGAACAAATTTTCAGTAATGTCGGAGAAAGGCGAAAAGGGTTTTTCAGTGCAAAAAAAACCTGCAAAGTCTTCCCTCAAGTCTTCCGCTCTCAAGGATGCTTCTCTAAAAGGAAAGGATGATAGTTTGTCAAAGCTAAAGAAGGGAAGGAAAGTCCAGTTCGATGCTCAAGGATCAGTTGATGCGCCAAATACTTTTTCGATGAAATACAGTGGCAAAAATGGTGACATGGGTAAAGGAGGAAAAGGTGCAAACACGAAGGCTTCTGTTGCAAAGGAACCCCAATCACTAGAATTAAAGATTGAGCAAGGTGAACTGCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAAGCTGCACAACTTTTACAGGGAATCCAAGATCAGATGGTTTTTCTATCCGCTGATCCAACCATAAAAATTCCCACGTCATTTGATAGGGGATTGCAATATGCTAAAAGAGCCAACCACTATGTAAATGCGGAGTCAGTTAGACCAGTTCTTGAAACCCTCAAGAAATATGGCATAACAGATAGTGAGATATGTGTGATTGCTAATGTCTGCCCAGACACTACTGATGAAGTTTTTGCTCTTCTTCCATCCTTGAAGAACAAAAGAAGCAAGCTAAGTGAACCTCTCAACAATGTCTTGAGTGAGCTAGCCAAGGTAAAATCATCCTGAACTGAAGCCATCGAGTTGCTTGCTGTTGCTGTTGCTCAGGTCCGGTTGCCCTCTCCCCTTCCTGTGAAAATTGTTTTATGGCATTTGAAAATTAGGACCTTATCTTTTCAATGGCTTTCAATAGATATAACTTCGGGGGAAGTAAAGTATTAGCCCATCGGAATATTTTGTTCTTGAAGAGATCTGTATTTGCTACTGGCATTGTTGATATAGTGTAGAAATATGGCTTAACTTTACTGAGAATGCATTTCCCACCTGAATCAACTCTGATAGCCTGAAAATTAAACTAGAAAACTTAGATAACTTATAGATATTAAATGTCAATTATTATATGCTTTTTGCTATTAGAGTACAAGATAATACTTTCAAGATTTTCAAATGCTCCATTCTAACTAAATGTACTTTCCGTTTCCGATAAGAAGAAAAATTTACGTGGAGATTATAAAGACCAACGATGTCATTTGGAATGCCCATTGACTCTCCAATCCACAAACGTTATTCTAACAAAAGAATTGTTCCGATATCTCATGAACTACATTCTTTCACTAAAACCACTAGACAATTCATCAGCCTTTTCCATTTCCTAATTATATTGCGATCAATAGAAACAGGATCCGGCTGAATTCTTGGACTTGTTGTTGCCATGGAAAATTGTTGATCCAAGTTCTGGGCAGTGTTTTGTTCATGTAATGAACGTTTATCCTTATTATTGTGTTCTTGGATGTCAGTTTCTTCACGATTGATCTCAGAATACTTCAACAAAGGGTTCTTCAATCAGCTTCTGGGTTAGAGCTTCATCAACTTTAAATGAGTTGTCCAGAATTGATCATTCCTCTCCCCTCCTTGTTCTTTCTGATTCACTGAACCTCAATTCGTCCATTGAAATCAATCCACACTGAGCTTTCTTGCTAGAATTTCTTGACGATTGGTCATACATTTTAACACAATCTTTAACTATATGCCCAATTATACCACAATTGAAACAAAAATCCGGTAACTTTTCATATCTTATTGGAAATCAACTTTCTTTCATTGAACTAGGGGTGAGTATGATAAATCGAAAAACCGAGTCGATTAATCAAATCGAAGTCGGTTGACGGAA

Coding sequence (CDS)

ATGTCGGAGAAAGGCGAAAAGGGTTTTTCAGTGCAAAAAAAACCTGCAAAGTCTTCCCTCAAGTCTTCCGCTCTCAAGGATGCTTCTCTAAAAGGAAAGGATGATAGTTTGTCAAAGCTAAAGAAGGGAAGGAAAGTCCAGTTCGATGCTCAAGGATCAGTTGATGCGCCAAATACTTTTTCGATGAAATACAGTGGCAAAAATGGTGACATGGGTAAAGGAGGAAAAGGTGCAAACACGAAGGCTTCTGTTGCAAAGGAACCCCAATCACTAGAATTAAAGATTGAGCAAGGTGAACTGCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAAGCTGCACAACTTTTACAGGGAATCCAAGATCAGATGGTTTTTCTATCCGCTGATCCAACCATAAAAATTCCCACGTCATTTGATAGGGGATTGCAATATGCTAAAAGAGCCAACCACTATGTAAATGCGGAGTCAGTTAGACCAGTTCTTGAAACCCTCAAGAAATATGGCATAACAGATAGTGAGATATGTGTGATTGCTAATGTCTGCCCAGACACTACTGATGAAGTTTTTGCTCTTCTTCCATCCTTGAAGAACAAAAGAAGCAAGCTAAGTGAACCTCTCAACAATGTCTTGAGTGAGCTAGCCAAGGTAAAATCATCCTGA

Protein sequence

MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNTFSMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQGELPKNVKCQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIANVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS

Homology

[Close]

BLAST of Cmc08g0218251 vs. NCBI nr
Match: XP_008440955.1 (PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis melo] >XP_008440957.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis melo] >XP_008440958.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis melo] >XP_008440959.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis melo])

HSP 1 Score: 413.3 bits (1061), Expect = 1.3e-111
Identity = 219/221 (99.10%), Postives = 220/221 (99.55%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNTF 60
           MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPN+F
Sbjct: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQGELPKNVKCQCLMDCEAAQLLQG 120
           SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQ ELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQ-ELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180
           IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA
Sbjct: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180

Query: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 222
           NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS
Sbjct: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 220

[Close]

BLAST of Cmc08g0218251 vs. NCBI nr
Match: XP_004134991.2 (DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis sativus] >XP_011658100.1 DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis sativus] >XP_011658101.1 DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis sativus] >KGN49020.1 hypothetical protein Csa_002874 [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 6.1e-109
Identity = 212/221 (95.93%), Postives = 218/221 (98.64%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNTF 60
           MSEKGEKGFSVQK+PAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDA NTF
Sbjct: 1   MSEKGEKGFSVQKRPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQGELPKNVKCQCLMDCEAAQLLQG 120
           SMKYSGKNGD+GKGGKGANTKAS+AKEPQ+LELKIEQ ELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SMKYSGKNGDLGKGGKGANTKASIAKEPQALELKIEQ-ELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180
           IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYG+TDSEICVIA
Sbjct: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIA 180

Query: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 222
           NVCPDTTDEVFALLPSLK KRSKLSEP+NNVLSELAKVKSS
Sbjct: 181 NVCPDTTDEVFALLPSLKRKRSKLSEPINNVLSELAKVKSS 220

[Close]

BLAST of Cmc08g0218251 vs. NCBI nr
Match: XP_008440960.1 (PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis melo])

HSP 1 Score: 401.4 bits (1030), Expect = 5.2e-108
Identity = 215/221 (97.29%), Postives = 216/221 (97.74%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNTF 60
           MSEKGEKGFSVQKKPAKSSLKSSALKD    GKDDSLSKLKKGRKVQFDAQGSVDAPN+F
Sbjct: 1   MSEKGEKGFSVQKKPAKSSLKSSALKD----GKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQGELPKNVKCQCLMDCEAAQLLQG 120
           SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQ ELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQ-ELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180
           IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA
Sbjct: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180

Query: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 222
           NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS
Sbjct: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 216

[Close]

BLAST of Cmc08g0218251 vs. NCBI nr
Match: XP_011658103.1 (DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis sativus] >XP_011658104.1 DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 392.5 bits (1007), Expect = 2.4e-105
Identity = 208/221 (94.12%), Postives = 214/221 (96.83%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNTF 60
           MSEKGEKGFSVQK+PAKSSLKSSALKD    GKDDSLSKLKKGRKVQFDAQGSVDA NTF
Sbjct: 1   MSEKGEKGFSVQKRPAKSSLKSSALKD----GKDDSLSKLKKGRKVQFDAQGSVDATNTF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQGELPKNVKCQCLMDCEAAQLLQG 120
           SMKYSGKNGD+GKGGKGANTKAS+AKEPQ+LELKIEQ ELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SMKYSGKNGDLGKGGKGANTKASIAKEPQALELKIEQ-ELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180
           IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYG+TDSEICVIA
Sbjct: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIA 180

Query: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 222
           NVCPDTTDEVFALLPSLK KRSKLSEP+NNVLSELAKVKSS
Sbjct: 181 NVCPDTTDEVFALLPSLKRKRSKLSEPINNVLSELAKVKSS 216

[Close]

BLAST of Cmc08g0218251 vs. NCBI nr
Match: XP_038881037.1 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispida] >XP_038881038.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispida] >XP_038881039.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 388.3 bits (996), Expect = 4.5e-104
Identity = 205/221 (92.76%), Postives = 212/221 (95.93%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNTF 60
           MS+KGEKGF VQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDA +TF
Sbjct: 1   MSDKGEKGFPVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAQSTF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQGELPKNVKCQCLMDCEAAQLLQG 120
           SMKYSGKNGD+GKGGKG NTKAS AKEPQ LELKIEQ ELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SMKYSGKNGDLGKGGKGVNTKASAAKEPQPLELKIEQ-ELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180
           IQDQMV LSADPTIKIPTSFDRGLQYAKRANHYVN+ESVRPVLETLKK+G+T+SEICVIA
Sbjct: 121 IQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLETLKKHGLTESEICVIA 180

Query: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 222
           NVCPDTTDEVFALLPSLK KRSKLSEPLNNVL ELAKVKSS
Sbjct: 181 NVCPDTTDEVFALLPSLKGKRSKLSEPLNNVLFELAKVKSS 220

[Close]

BLAST of Cmc08g0218251 vs. ExPASy Swiss-Prot
Match: Q6DBA5 (DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPD4 PE=1 SV=2)

HSP 1 Score: 156.0 bits (393), Expect = 5.0e-37
Identity = 102/223 (45.74%), Postives = 131/223 (58.74%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNTF 60
           MSEKG KG        KSSLKS   KD    GKD S +KLKKGRK+ FD +         
Sbjct: 1   MSEKGGKGL-------KSSLKS---KDG---GKDGSSTKLKKGRKIHFDQRTPPANYKIL 60

Query: 61  SMKYSGK--NGDMGKGGKGANTKASVAKEPQSLELKIEQGELPKNVKCQCLMDCEAAQLL 120
           ++    +       K GK      S      S ELK    +LP+N   +C+MDCEA Q+L
Sbjct: 61  NVSSDQQPFQSSAAKCGKSDKPTKSSKNSLHSFELK----DLPEN--AECMMDCEAFQIL 120

Query: 121 QGIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICV 180
            GI+ Q+V LS DP+IKIP S+DR L Y +   HY N +SVR VLE LK YGI+D E+CV
Sbjct: 121 DGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCV 180

Query: 181 IANVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 222
           IAN   ++ DEV A +PSLK K+  +++PL + L EL+K+K S
Sbjct: 181 IANASSESVDEVLAFIPSLKTKKEVINQPLQDALEELSKLKKS 204

[Close]

BLAST of Cmc08g0218251 vs. ExPASy Swiss-Prot
Match: O48890 (DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB4 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.1e-19
Identity = 50/135 (37.04%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 86  KEPQSLELKIEQGELPKNVKCQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQ 145
           +E  + ELKI      + +K +CLM+CE + +L+   +Q+  +S DP  ++   F++ LQ
Sbjct: 5   EEENAAELKIGD----EFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 64

Query: 146 YAKRANHYVNAESVRPVLETLKKYGITDSEICVIANVCPDTTDEVFALLPSLKNK-RSKL 205
           Y KR + Y N ++VR V E L ++ +T+ E+CV+ N+CP+T +E  A++PSLK K R+  
Sbjct: 65  YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 124

Query: 206 SEPLNNVLSELAKVK 220
            E +  +L++L+ VK
Sbjct: 125 DEAIEKMLNDLSLVK 135

[Close]

BLAST of Cmc08g0218251 vs. ExPASy Swiss-Prot
Match: Q54S04 (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689 GN=polr2d PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 38/135 (28.15%), Postives = 70/135 (51.85%), Query Frame = 0


Query: 99  ELPKNVK-CQCLMDCEAAQLLQ---GIQDQ----------MVFLSADPTIKIPTSFDRGL 158
           + P+++K  + L++ E A LL+   GI +           ++ L  +    I  +F + L
Sbjct: 21  KFPRDLKDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSINDIIRTFHKTL 80

Query: 159 QYAKRANHYVNAESVRPVLETLKKYGITDSEICVIANVCPDTTDEVFALLPSLKNKRSKL 218
            YA++ + Y N  S++ V   L K  + + EI  +AN+CP+ +DE  +L+PSLK      
Sbjct: 81  AYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIPSLKKME--- 140

Query: 219 SEPLNNVLSELAKVK 220
            + L  +L EL+ ++
Sbjct: 141 DDELQAILDELSNLR 152

[Close]

BLAST of Cmc08g0218251 vs. ExPASy Swiss-Prot
Match: O15514 (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.5e-04
Identity = 36/142 (25.35%), Postives = 73/142 (51.41%), Query Frame = 0


Query: 82  ASVAKEPQSLELKIEQGEL--PKNVK-CQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPT 141
           A+   +P++ +++ +  +L  PK  +  + L++ E   LL+  + Q    SA+   ++  
Sbjct: 2   AAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSE 61

Query: 142 SFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIANVCPDTTDEVFALLPSLK 201
            F + L Y  R + + N E++  V   L +  +   E+  +AN+CP+T +E  AL+PSL+
Sbjct: 62  VFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLE 121

Query: 202 NKRSKLSEPLNNVLSELAKVKS 221
            +     E L  +L ++   +S
Sbjct: 122 GRFE--DEELQQILDDIQTKRS 139

[Close]

BLAST of Cmc08g0218251 vs. ExPASy Swiss-Prot
Match: Q9D7M8 (DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.5e-04
Identity = 36/142 (25.35%), Postives = 73/142 (51.41%), Query Frame = 0


Query: 82  ASVAKEPQSLELKIEQGEL--PKNVK-CQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPT 141
           A+   +P++ +++ +  +L  PK  +  + L++ E   LL+  + Q    SA+   ++  
Sbjct: 2   AAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSE 61

Query: 142 SFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIANVCPDTTDEVFALLPSLK 201
            F + L Y  R + + N E++  V   L +  +   E+  +AN+CP+T +E  AL+PSL+
Sbjct: 62  VFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLE 121

Query: 202 NKRSKLSEPLNNVLSELAKVKS 221
            +     E L  +L ++   +S
Sbjct: 122 GRFE--DEELQQILDDIQTKRS 139

[Close]

BLAST of Cmc08g0218251 vs. ExPASy TrEMBL
Match: A0A1S3B2C2 (DNA-directed RNA polymerases IV and V subunit 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485216 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.4e-112
Identity = 219/221 (99.10%), Postives = 220/221 (99.55%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNTF 60
           MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPN+F
Sbjct: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQGELPKNVKCQCLMDCEAAQLLQG 120
           SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQ ELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQ-ELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180
           IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA
Sbjct: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180

Query: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 222
           NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS
Sbjct: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 220

[Close]

BLAST of Cmc08g0218251 vs. ExPASy TrEMBL
Match: A0A0A0KH45 (RPOL4c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G510870 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.0e-109
Identity = 212/221 (95.93%), Postives = 218/221 (98.64%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNTF 60
           MSEKGEKGFSVQK+PAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDA NTF
Sbjct: 1   MSEKGEKGFSVQKRPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQGELPKNVKCQCLMDCEAAQLLQG 120
           SMKYSGKNGD+GKGGKGANTKAS+AKEPQ+LELKIEQ ELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SMKYSGKNGDLGKGGKGANTKASIAKEPQALELKIEQ-ELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180
           IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYG+TDSEICVIA
Sbjct: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIA 180

Query: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 222
           NVCPDTTDEVFALLPSLK KRSKLSEP+NNVLSELAKVKSS
Sbjct: 181 NVCPDTTDEVFALLPSLKRKRSKLSEPINNVLSELAKVKSS 220

[Close]

BLAST of Cmc08g0218251 vs. ExPASy TrEMBL
Match: A0A1S3B2C7 (DNA-directed RNA polymerases IV and V subunit 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485216 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.5e-108
Identity = 215/221 (97.29%), Postives = 216/221 (97.74%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNTF 60
           MSEKGEKGFSVQKKPAKSSLKSSALKD    GKDDSLSKLKKGRKVQFDAQGSVDAPN+F
Sbjct: 1   MSEKGEKGFSVQKKPAKSSLKSSALKD----GKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQGELPKNVKCQCLMDCEAAQLLQG 120
           SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQ ELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQ-ELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180
           IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA
Sbjct: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180

Query: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 222
           NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS
Sbjct: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 216

[Close]

BLAST of Cmc08g0218251 vs. ExPASy TrEMBL
Match: A0A6J1KMD1 (DNA-directed RNA polymerases IV and V subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111497005 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 8.4e-96
Identity = 194/222 (87.39%), Postives = 202/222 (90.99%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNTF 60
           MSEKGEKGF VQKKP KSSLKS A KDASLKGKDDSLSK KKGRKVQFDAQGSVDA    
Sbjct: 1   MSEKGEKGFPVQKKPGKSSLKSLASKDASLKGKDDSLSKSKKGRKVQFDAQGSVDAHINL 60

Query: 61  SMKYSGKNGDMGKGGKGAN-TKASVAKEPQSLELKIEQGELPKNVKCQCLMDCEAAQLLQ 120
           SMK+ GKNGD+GKGGKG N  KASV+KE Q LELKIEQ ELPKNVKCQCLMDCEAAQLLQ
Sbjct: 61  SMKFGGKNGDLGKGGKGINGGKASVSKEQQPLELKIEQ-ELPKNVKCQCLMDCEAAQLLQ 120

Query: 121 GIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVI 180
           GIQDQMV LSADPTIKIPTSFDRGLQYAKRANHYVN ESVRPVLETLKKYG+ DSEICVI
Sbjct: 121 GIQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVADSEICVI 180

Query: 181 ANVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 222
           ANVCPDT DEVFAL+PSLK+KRSKL+EPLNNVLSELAK+KSS
Sbjct: 181 ANVCPDTIDEVFALVPSLKSKRSKLTEPLNNVLSELAKLKSS 221

[Close]

BLAST of Cmc08g0218251 vs. ExPASy TrEMBL
Match: A0A6J1EJD9 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433844 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.2e-95
Identity = 192/222 (86.49%), Postives = 202/222 (90.99%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNTF 60
           MSEKGEKGF VQKKP KSSLKSSA KDASLKGKDDSLSK KKGRKVQFDAQGSVDA    
Sbjct: 1   MSEKGEKGFPVQKKPGKSSLKSSASKDASLKGKDDSLSKSKKGRKVQFDAQGSVDAQINL 60

Query: 61  SMKYSGKNGDMGKGGKGAN-TKASVAKEPQSLELKIEQGELPKNVKCQCLMDCEAAQLLQ 120
           S+K+SGKNGD+GKGGKG N  KASV+KE Q LELKIEQ ELPKNVKCQCLMDCEAAQLLQ
Sbjct: 61  SLKFSGKNGDLGKGGKGINGGKASVSKEQQPLELKIEQ-ELPKNVKCQCLMDCEAAQLLQ 120

Query: 121 GIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVI 180
           GIQDQM  LSADPTIKIPTSFDRGLQYAKRANHYVN E VRPVLETLKKYG+ DSEICVI
Sbjct: 121 GIQDQMALLSADPTIKIPTSFDRGLQYAKRANHYVNTELVRPVLETLKKYGVADSEICVI 180

Query: 181 ANVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 222
           ANVCPDTTDEVF+L+PSLK+KRSKL+EPLNNVL ELAK+KSS
Sbjct: 181 ANVCPDTTDEVFSLVPSLKSKRSKLTEPLNNVLIELAKLKSS 221

[Close]

BLAST of Cmc08g0218251 vs. TAIR 10
Match: AT4G15950.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 156.0 bits (393), Expect = 3.5e-38
Identity = 102/223 (45.74%), Postives = 131/223 (58.74%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNTF 60
           MSEKG KG        KSSLKS   KD    GKD S +KLKKGRK+ FD +         
Sbjct: 1   MSEKGGKGL-------KSSLKS---KDG---GKDGSSTKLKKGRKIHFDQRTPPANYKIL 60

Query: 61  SMKYSGK--NGDMGKGGKGANTKASVAKEPQSLELKIEQGELPKNVKCQCLMDCEAAQLL 120
           ++    +       K GK      S      S ELK    +LP+N   +C+MDCEA Q+L
Sbjct: 61  NVSSDQQPFQSSAAKCGKSDKPTKSSKNSLHSFELK----DLPEN--AECMMDCEAFQIL 120

Query: 121 QGIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICV 180
            GI+ Q+V LS DP+IKIP S+DR L Y +   HY N +SVR VLE LK YGI+D E+CV
Sbjct: 121 DGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCV 180

Query: 181 IANVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 222
           IAN   ++ DEV A +PSLK K+  +++PL + L EL+K+K S
Sbjct: 181 IANASSESVDEVLAFIPSLKTKKEVINQPLQDALEELSKLKKS 204

[Close]

BLAST of Cmc08g0218251 vs. TAIR 10
Match: AT5G09920.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-20
Identity = 50/135 (37.04%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 86  KEPQSLELKIEQGELPKNVKCQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQ 145
           +E  + ELKI      + +K +CLM+CE + +L+   +Q+  +S DP  ++   F++ LQ
Sbjct: 5   EEENAAELKIGD----EFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 64

Query: 146 YAKRANHYVNAESVRPVLETLKKYGITDSEICVIANVCPDTTDEVFALLPSLKNK-RSKL 205
           Y KR + Y N ++VR V E L ++ +T+ E+CV+ N+CP+T +E  A++PSLK K R+  
Sbjct: 65  YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 124

Query: 206 SEPLNNVLSELAKVK 220
            E +  +L++L+ VK
Sbjct: 125 DEAIEKMLNDLSLVK 135

The following BLAST results are available for this feature:

BLAST of Cmc08g0218251 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440955.1	1.3e-111	99.10	PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis m...	[more]
XP_004134991.2	6.1e-109	95.93	DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis sativus] >XP...	[more]
XP_008440960.1	5.2e-108	97.29	PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis m...	[more]
XP_011658103.1	2.4e-105	94.12	DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis sativus] >XP...	[more]
XP_038881037.1	4.5e-104	92.76	DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispi...	[more]

BLAST of Cmc08g0218251 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DBA5	5.0e-37	45.74	DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana OX=3702 ...	[more]
O48890	6.1e-19	37.04	DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q54S04	1.6e-06	28.15	DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689...	[more]
O15514	1.5e-04	25.35	DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE...	[more]
Q9D7M8	1.5e-04	25.35	DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d P...	[more]

BLAST of Cmc08g0218251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B2C2	6.4e-112	99.10	DNA-directed RNA polymerases IV and V subunit 4 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A0A0KH45	3.0e-109	95.93	RPOL4c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G510870 PE=4...	[more]
A0A1S3B2C7	2.5e-108	97.29	DNA-directed RNA polymerases IV and V subunit 4 isoform X2 OS=Cucumis melo OX=36...	[more]
A0A6J1KMD1	8.4e-96	87.39	DNA-directed RNA polymerases IV and V subunit 4-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1EJD9	3.2e-95	86.49	DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 OS=Cucurbita mos...	[more]

BLAST of Cmc08g0218251 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15950.1	3.5e-38	45.74	RNA polymerase II, Rpb4, core protein	[more]
AT5G09920.1	4.3e-20	37.04	RNA polymerase II, Rpb4, core protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006590	RNA polymerase Rpb4/RPC9, core	SMART	SM00657	rpol4neu2	coord: 101..220 e-value: 1.4E-5 score: 32.4
IPR005574	RNA polymerase subunit RPB4/RPC9	PFAM	PF03874	RNA_pol_Rpb4	coord: 109..218 e-value: 3.5E-10 score: 40.3
IPR038324	Rpb4/RPC9 superfamily	GENE3D	1.20.1250.40		coord: 84..221 e-value: 2.0E-28 score: 100.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..48
None	No IPR available	PANTHER	PTHR21297:SF2	DNA-DIRECTED RNA POLYMERASES IV AND V SUBUNIT 4	coord: 1..221
None	No IPR available	PANTHER	PTHR21297	DNA-DIRECTED RNA POLYMERASE II	coord: 1..221
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 81..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0218251.1	Cmc08g0218251.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0000428	DNA-directed RNA polymerase complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030880	RNA polymerase complex
molecular_function	GO:0000166	nucleotide binding