Cmc08g0216671 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0216671
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Protein pleiotropic regulatory locus 1
Location	CMiso1.1chr08: 5715747 .. 5716717 (+)
RNA-Seq Expression	Cmc08g0216671
Synteny	Cmc08g0216671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGGGATTGGTAAAATTACAGAGTCATAAGTGGTCACCTAAGTTGTGTAGGGTCTATTGCATTTGATCCAAGCAACATGTGTTTTTGTACTGGATCAGTAGATCGTACCAACGGGATTTGAGATGAAGAACAAGTCAAATGCTGGGATCTCTAACAGAACAAGGTAATCAGTTCTTATCTTGGGTGTTTATTATCTGGCTCTTCATCCAACTATTGATATTTTGATTACTGCGGGTCGTGATTCTGTCTGTCGAATTTTTGACATTCGAGGTTCAAATTCATGCCCTTTCAAGACATGGTAACACAATTTGCTCTGTTTTTTTTCTCGACCCACTGATTTACAGGTTGTGATTGTCTCCCATGACCTAACTATTACGTTTTGGGATCGTAGATATGGAAAAACAATGACAACTCTAACACATCAGAAGAAATCTTTTCGAGCAATGGCACAACATCCTAACAACACAGTGTCTTTGCATCTGCTTCAGCGGATAATATCAAGAAATTTAATCTTCCCAGAGGGGAGTTTGGGCAGAACATGCGGTGGATGTCAGTGAGTGGAGTTGACAATGGTAGTTTATGGTTCTGGGATTGGAATACTGCTTATAACTTTCAGCGATCACAAACAATTGCTCAACCTGGCTCGTTGGATAGTGATGCTGGGATTTATGCTCTTTCCTATTACATAACTGGTTCGAGGCTTGTAACTTGTGAAGCAGATAAAACTAATAGATGTGGATAGAAGATGAAAATGCTACCCCTATAACTGACTATCTCTTCAAAAATATCAAGCCATCCGAAGATATACGAAGACTCTAGGCTTAGTTTTTCAATTTTTTTTAATTTCTTTTTTGTTGTAAATATAATCACTAACGTTTGTGAATTCTTTGGAAATTAGTCAATTTTCCTTAGAACATTGTAATTGTCATGTTTCTATTTTCTCTTACAAACTACGAAGTACAGAATATTT

mRNA sequence

GTCGGGATTGGTAAAATTACAGAGTCATAAGTGGTCACCTAAGTTGTGTAGGGTCTATTGCATTTGATCCAAGCAACATGTGTTTTTGTACTGGATCAGTAGATCGTACCAACGGGATTTGAGATGAAGAACAAGTCAAATGCTGGGATCTCTAACAGAACAAGGTTGTGATTGTCTCCCATGACCTAACTATTACGTTTTGGGATCGTAGATATGGAAAAACAATGACAACTCTAACACATCAGAAGAAATCTTTTCGAGCAATGGCACAACATCCTAACAACACAGTGTCTTTGCATCTGCTTCAGCGGATAATATCAAGAAATTTAATCTTCCCAGAGGGGAGTTTGGGCAGAACATGCGGTGGATGTCAGTGAGTGGAGTTGACAATGGTAGTTTATGGTTCTGGGATTGGAATACTGCTTATAACTTTCAGCGATCACAAACAATTGCTCAACCTGGCTCGTTGGATAGTGATGCTGGGATTTATGCTCTTTCCTATTACATAACTGGTTCGAGGCTTGTAACTTGTGAAGCAGATAAAACTAATAGATGTGGATAGAAGATGAAAATGCTACCCCTATAACTGACTATCTCTTCAAAAATATCAAGCCATCCGAAGATATACGAAGACTCTAGGCTTAGTTTTTCAATTTTTTTTAATTTCTTTTTTGTTGTAAATATAATCACTAACGTTTGTGAATTCTTTGGAAATTAGTCAATTTTCCTTAGAACATTGTAATTGTCATGTTTCTATTTTCTCTTACAAACTACGAAGTACAGAATATTT

Coding sequence (CDS)

ATGCGGTGGATGTCAGTGAGTGGAGTTGACAATGGTAGTTTATGGTTCTGGGATTGGAATACTGCTTATAACTTTCAGCGATCACAAACAATTGCTCAACCTGGCTCGTTGGATAGTGATGCTGGGATTTATGCTCTTTCCTATTACATAACTGGTTCGAGGCTTGTAACTTGTGAAGCAGATAAAACTAATAGATGTGGATAG

Protein sequence

MRWMSVSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKTNRCG

Homology

[Close]

BLAST of Cmc08g0216671 vs. NCBI nr
Match: KAA0025721.1 (protein pleiotropic regulatory locus 1 [Cucumis melo var. makuwa] >TYK12596.1 protein pleiotropic regulatory locus 1 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 5.2e-27
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 6  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKTNR 65
          VSGVDNGSLWFWDWNTAYNFQRSQT AQPGSLDS+AGIYALSY ITGSRLVTCEADKTNR
Sbjct: 31 VSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKTNR 90

Query: 66 CG 68
          CG
Sbjct: 91 CG 92

[Close]

BLAST of Cmc08g0216671 vs. NCBI nr
Match: KGN48861.1 (hypothetical protein Csa_003772 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 5.0e-22
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 7  SGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKTNRC 66
          SG DNG LWFWDW TAYNFQ+SQTIAQP SLDS+AGIYALSY I GSRLVTCEADKT RC
Sbjct: 6  SGGDNGILWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIRC 65

Query: 67 G 68
          G
Sbjct: 66 G 66

[Close]

BLAST of Cmc08g0216671 vs. NCBI nr
Match: XP_008458420.1 (PREDICTED: protein pleiotropic regulatory locus 1 [Cucumis melo] >XP_008458421.1 PREDICTED: protein pleiotropic regulatory locus 1 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 6   VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT 64
           V+G DNGSLWFWDW + +NFQ+SQTI QPGSLDS+AGIYALSY ITGSRLVTCEADKT
Sbjct: 398 VTGGDNGSLWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDITGSRLVTCEADKT 455

[Close]

BLAST of Cmc08g0216671 vs. NCBI nr
Match: XP_038874340.1 (protein pleiotropic regulatory locus 1 [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 6   VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT 64
           V+G DNGSLWFWDW + +NFQ+SQTI QPGSLDS+AGIYALSY ITGSRLVTCEADKT
Sbjct: 398 VTGGDNGSLWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDITGSRLVTCEADKT 455

[Close]

BLAST of Cmc08g0216671 vs. NCBI nr
Match: XP_022138465.1 (protein pleiotropic regulatory locus 1 [Momordica charantia] >XP_022138466.1 protein pleiotropic regulatory locus 1 [Momordica charantia] >XP_022138467.1 protein pleiotropic regulatory locus 1 [Momordica charantia] >XP_022138468.1 protein pleiotropic regulatory locus 1 [Momordica charantia])

HSP 1 Score: 107.5 bits (267), Expect = 4.7e-20
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 6   VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT 64
           V+G DNGSLWFWDW + +NFQ+SQTI QPGSLDS+AGIYALSY ITGSRL+TCEADKT
Sbjct: 398 VTGGDNGSLWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDITGSRLITCEADKT 455

[Close]

BLAST of Cmc08g0216671 vs. ExPASy Swiss-Prot
Match: Q42384 (Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana OX=3702 GN=PRL1 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-19
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 6   VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT 64
           V+G DNGS+WFWDW + ++FQ+S+TI QPGSL+S+AGIYA  Y  TGSRLVTCEADKT
Sbjct: 401 VTGGDNGSIWFWDWKSGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKT 458

[Close]

BLAST of Cmc08g0216671 vs. ExPASy Swiss-Prot
Match: Q39190 (Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana OX=3702 GN=PRL2 PE=2 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 9.2e-19
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 6   VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT 64
           V+G D G LWFWDW + +NFQR++TI QPGSL+S+AGIYA  Y  TGSRLVTCE DKT
Sbjct: 394 VTGGDKGGLWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKT 451

[Close]

BLAST of Cmc08g0216671 vs. ExPASy Swiss-Prot
Match: O13615 (Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp5 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-15
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 7   SGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT 64
           SG DNGS+ FWDW + + +Q  Q++ QPGSLDS+AGI+A S+  TG RL+TCEADK+
Sbjct: 388 SGADNGSMCFWDWKSGHKYQELQSVVQPGSLDSEAGIFASSFDKTGLRLITCEADKS 444

[Close]

BLAST of Cmc08g0216671 vs. ExPASy Swiss-Prot
Match: Q2KID6 (Pleiotropic regulator 1 OS=Bos taurus OX=9913 GN=PLRG1 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.1e-14
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 6   VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT 64
           VSG DNG++  WDW T YNFQR     QPGSLDS++GI+A ++  + SRL+T EADKT
Sbjct: 427 VSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLLTAEADKT 484

[Close]

BLAST of Cmc08g0216671 vs. ExPASy Swiss-Prot
Match: O43660 (Pleiotropic regulator 1 OS=Homo sapiens OX=9606 GN=PLRG1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.1e-14
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 6   VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT 64
           VSG DNG++  WDW T YNFQR     QPGSLDS++GI+A ++  + SRL+T EADKT
Sbjct: 428 VSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLLTAEADKT 485

[Close]

BLAST of Cmc08g0216671 vs. ExPASy TrEMBL
Match: A0A5D3CQ93 (Protein pleiotropic regulatory locus 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001800 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.5e-27
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 6  VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKTNR 65
          VSGVDNGSLWFWDWNTAYNFQRSQT AQPGSLDS+AGIYALSY ITGSRLVTCEADKTNR
Sbjct: 31 VSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKTNR 90

Query: 66 CG 68
          CG
Sbjct: 91 CG 92

[Close]

BLAST of Cmc08g0216671 vs. ExPASy TrEMBL
Match: A0A0A0KM95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504425 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-22
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 7  SGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKTNRC 66
          SG DNG LWFWDW TAYNFQ+SQTIAQP SLDS+AGIYALSY I GSRLVTCEADKT RC
Sbjct: 6  SGGDNGILWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIRC 65

Query: 67 G 68
          G
Sbjct: 66 G 66

[Close]

BLAST of Cmc08g0216671 vs. ExPASy TrEMBL
Match: A0A1S3C7C3 (protein pleiotropic regulatory locus 1 OS=Cucumis melo OX=3656 GN=LOC103497843 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 6   VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT 64
           V+G DNGSLWFWDW + +NFQ+SQTI QPGSLDS+AGIYALSY ITGSRLVTCEADKT
Sbjct: 398 VTGGDNGSLWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDITGSRLVTCEADKT 455

[Close]

BLAST of Cmc08g0216671 vs. ExPASy TrEMBL
Match: A0A6J1CB66 (protein pleiotropic regulatory locus 1 OS=Momordica charantia OX=3673 GN=LOC111009634 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-20
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 6   VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT 64
           V+G DNGSLWFWDW + +NFQ+SQTI QPGSLDS+AGIYALSY ITGSRL+TCEADKT
Sbjct: 398 VTGGDNGSLWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDITGSRLITCEADKT 455

[Close]

BLAST of Cmc08g0216671 vs. ExPASy TrEMBL
Match: W1P3X1 (WD_REPEATS_REGION domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00045p00233670 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.9e-20
Identity = 45/58 (77.59%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 6   VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT 64
           V+G DNGSLWFWDWN+ +NFQ++QTI QPGSLDS+AGIYALSY +TGSRL++CEADKT
Sbjct: 410 VTGGDNGSLWFWDWNSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLISCEADKT 467

[Close]

BLAST of Cmc08g0216671 vs. TAIR 10
Match: AT4G15900.1 (pleiotropic regulatory locus 1 )

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-20
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 6   VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT 64
           V+G DNGS+WFWDW + ++FQ+S+TI QPGSL+S+AGIYA  Y  TGSRLVTCEADKT
Sbjct: 401 VTGGDNGSIWFWDWKSGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKT 458

[Close]

BLAST of Cmc08g0216671 vs. TAIR 10
Match: AT3G16650.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 6.5e-20
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 6   VSGVDNGSLWFWDWNTAYNFQRSQTIAQPGSLDSDAGIYALSYYITGSRLVTCEADKT 64
           V+G D G LWFWDW + +NFQR++TI QPGSL+S+AGIYA  Y  TGSRLVTCE DKT
Sbjct: 394 VTGGDKGGLWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKT 451

The following BLAST results are available for this feature:

BLAST of Cmc08g0216671 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025721.1	5.2e-27	95.16	protein pleiotropic regulatory locus 1 [Cucumis melo var. makuwa] >TYK12596.1 pr...	[more]
KGN48861.1	5.0e-22	85.25	hypothetical protein Csa_003772 [Cucumis sativus]	[more]
XP_008458420.1	3.6e-20	82.76	PREDICTED: protein pleiotropic regulatory locus 1 [Cucumis melo] >XP_008458421.1...	[more]
XP_038874340.1	3.6e-20	82.76	protein pleiotropic regulatory locus 1 [Benincasa hispida]	[more]
XP_022138465.1	4.7e-20	81.03	protein pleiotropic regulatory locus 1 [Momordica charantia] >XP_022138466.1 pro...	[more]

BLAST of Cmc08g0216671 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42384	1.8e-19	70.69	Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana OX=3702 GN=PRL1 P...	[more]
Q39190	9.2e-19	68.97	Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana OX=3702 GN=PRL2 PE=2 ...	[more]
O13615	2.1e-15	59.65	Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
Q2KID6	3.1e-14	58.62	Pleiotropic regulator 1 OS=Bos taurus OX=9913 GN=PLRG1 PE=2 SV=1	[more]
O43660	3.1e-14	58.62	Pleiotropic regulator 1 OS=Homo sapiens OX=9606 GN=PLRG1 PE=1 SV=1	[more]

BLAST of Cmc08g0216671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQ93	2.5e-27	95.16	Protein pleiotropic regulatory locus 1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0KM95	2.4e-22	85.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504425 PE=4 SV=1	[more]
A0A1S3C7C3	1.7e-20	82.76	protein pleiotropic regulatory locus 1 OS=Cucumis melo OX=3656 GN=LOC103497843 P...	[more]
A0A6J1CB66	2.3e-20	81.03	protein pleiotropic regulatory locus 1 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
W1P3X1	3.9e-20	77.59	WD_REPEATS_REGION domain-containing protein OS=Amborella trichopoda OX=13333 GN=...	[more]

BLAST of Cmc08g0216671 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15900.1	1.3e-20	70.69	pleiotropic regulatory locus 1	[more]
AT3G16650.1	6.5e-20	68.97	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 2..66 e-value: 1.3E-9 score: 39.3
None	No IPR available	PANTHER	PTHR19923:SF1	BNAA01G27690D PROTEIN	coord: 6..65
None	No IPR available	PANTHER	PTHR19923	WD40 REPEAT PROTEINPRL1/PRL2-RELATED	coord: 6..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0216671.1	Cmc08g0216671.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0000974	Prp19 complex
molecular_function	GO:0005515	protein binding