Cmc08g0216291 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0216291
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description50S ribosomal protein L6, putative
LocationCMiso1.1chr08: 5549145 .. 5554133 (+)
RNA-Seq ExpressionCmc08g0216291
SyntenyCmc08g0216291
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTTTTCATATCTATTCACCAGCGACGAATCGAGTAAAAGTTACAAATAACAATACTACAACAAAATCAAATCCACGATAAACCAAACAATCAGCCCGAAAGGTGAACAAGATGTATTGAGAGAATCACCTAGGGTAAGCATCGGCGTCCTTTTTAGAAAATTTAGATATCTCCAAGTAATCATGTTCATCATTCATTCCAAGTAGAAGAAAACGACCGTCGAGGCAGGGTGTGAATGATGTGGCCATCGGTTTCAATAACTTCAATCCATGTCTCCGCAATTCCAAGTCCCTTCGATTTCAATCCGATAGCCATTCCAAATGAAAATAGGAAGAAAATAAATCATTACATAAAAACAAATGACGAATCTGGACAGAAACTAGAAGAATTAAAACTACCTGATGATGGAAGGCCGGAGGAGACTTAGGAGATAACTACATCGAGAGAATTTAAATCCTGGAATTAACTCTTCAGTAACAGCAGCGCCGCCGATCACATGGCGCCTCTCAAGAACGGCAACAGAGAGGCCGGCACGGGCAAGATAAGCAGCGGCTATCAAACCGTTGTGGCCTGCGCCGACGACGAGCGCGTCCCATTTCTTATCCTTCAGCACTGCGCGCGTTGCATTGCCGCTGAAGCTTCGATTCCACATAGCTTCAACTCTCTTTCTTGATCGGTAAATGGAATACTTCAACTACAAATCCAACCATTTTCAGATAACCAGTGGGATTGTTACGTGTACTGATTTTGTCTTCTTGCAGGATTATGTATGCGAGTGGAAGCAGTTCCATGAATTTCCTGATTTTGGCGCCAATCGCTTTCCTCCATCAGGATGGTTTGTCCTTTTCAACACTTTCAGGACAATTGCTCTTTGGTTGTGATGTGAGTGGAGATGTTGATTTCACAACATAACTATATGTCTATTGTCACAATTTTGGTTTTATAAAAATAATAATTAGAATTGGAATTTTGGTGTATATATTTATATACAGATTTGAATAATTATTTATCTAAATATTCAATATATTTTATTCATTTAATTTTGTAAGTGATTTTAAAATGGTTAAACAATTTAAAATCACTTCCACTTAACCAATCAATATCTCTAATCACCTTCTTTATATCAGCAAAGGAATGGAATCAATTTTGAAAAAAAATTAATTCATTTTGGTATAACTTTTTGAACAATGTTTTTAAACTTACATCATTTGAAATTACTAAAATGACCAGTATTTATATTTTTTTTTAAGCTTCCATCTGTCTTGCAACACAGGCCTTTATGGCCAATGAGCGACAACAAATAACTTTTTTACATTCCTTCTTCGTTATGCTGTTTTTTCCTTTTTCTTATTTTCTTGTTCTCTAGCATGAGCGAAAAAAAGTAAAACAATAGAAATAGTTTAAACGAAGAAAAAAAAAATTATAGTTGTATTTGACGAAGTAGAAAGAGAAAGATGATAAGGAACAGCCAAATCTTTAGGCTCGTGCAATTGATACTTCAATACGTAACTACATCAACAAAAAAAGTCATTTTTCAAATCTTTAGATTTCAGTTCTATCTTGAAAAAGTTATTCTTACAAGTTTTTCGATATTTATCTAAAAAAAAGAGTGAGAGAAAAAAATGTTGTTTCCATTTTCCTATAAACCATATTTGACCTTCAGCTCGTCCTGTAGCAAGAGGCTGTTTGCCCCACCTTGCAAGCTGTTTTTGTTGCGACCACACTCATCTTTTTGTGTTGGTTTGGATTAAATTTTGTGTTAGGTTTTGTTGAGTTTCAAATTTGGAGGAAAAAATTTCTAGGATCGGGTCGTCGGGTTTTCTAAATAACCCAGTCCGACCCGGTTAGGCATATAATATATTAAAAAAAAAAAAAAAAAAAACTAAAACCTAAAACCTTTTCGTAATTCGCCGCACGCCCCTTTTCTTCAATCTTCAGTTCAGCTTCCTCCCCGTCGGCCGACCATTTCTTCGCTCGCCCTTCAAGCCGGCCGCCCCCCCTCCGCCGGTGTCCAGTTGCCCTCTTCGACACTGTTCGTCCTTCATCATTTTTTCCGCCTTCCCTGTTGTCCTCCTTCCCGCCAACACTTTGGATTTGGTGTTGAATTTGTTTTCTGACTGCACTTAGGTGAGTTAAACATTTTGAATTCGCTGAATCTGCTGAATTTGATTTCGTTGAATTTGTGTTGTTGAAATTGTTCAGTTAAATAAAATTTTGGTTTAACTTCAAAAGCCTTGCTTGGATCCCAACACAATTAAGTTTCAGTAAAAATATATATATACATATATATTGACATCTTAAAATATATACCAAACAAGTCCTAAAAAAGTTATTTGGTATGTTTAATAATTTTATGTATTGTCTGAAATCTCAACTTTAGTTTCAATGTACTCAAATTCTCGAGACATGAATTGTAACTTGTCACGAACTATTGTTTGAATGGCTCTATTGTTCAAGCAGCTTCTTTACTTTGTCTGAATGTGATGTGATTTCAATAACCATAGTATTCATCTTTGCATTTTGATGTCTTTTTCTTTTTATCCCGGTAAAGTTCTATCTTTTATTGGTGTTGCCCGAGGTGGTAAGCTTATTACATTCATCTTCTTCTATGATCCTTCGCCATTGTTCTCCCTATATTATAGCTATACTATACGTATATCAGTAAAGATACTATTTTCTGAGTTTTGTATTTCAATCTTAATATTGAAGCTTCAGTTACCACATCTCCCTTCGCAATTGAGTTTTAAATTTTATATCATAATTAAAGTCTAAACTTTACCTTGTTCCTGTGTTTTTTCCCACCACTATTTTCCCCATTTTTGAGTGAGGTTCAATCTTAATCTTGGAGCTTCATCTACCCAGTGCTTCTAAAGTTCAAGGTGCAATAAAGCTCATCAGTCCTAGGAAAAAAAAAAGGAAAAAAGAAAAAAAAAGAAGCAAAAGCTCAGATTGTTGTTTGTTATTCCGACTATGTAATACTACGTAAAGAAAAAAAATCATAGTTGAAGTGGACATGAAAGAAAGCCCCTAAACATAAGGGATTTTGATTTCAAGTTTAGTAAATTTGATTCTTTTAGTTAATAAAGGAGGATAGGCTCTAGTTATTTTACTAGTTTTCAAAAACAATTAAAAAAGTTCAAGGGCTAAGGCTTTGAGCCTTGGGGCTTCACAAAAGGTGCACCTTACTTTTTTAAACATAGGTATAATACAAAACTTGGGGGGAAGGAATTTATCTGATGGTGGTCTCCTATCTAGAACTTAATAATGTACGAGTTTCCTTGGTGTCCATATGTTGTAGTTAGAGGTAAAAGAGGTTATTTTGTAAGCTTGGTCAAGGTGTGCAAGCAAGTTGGTTAGGGCACTAACAAATAGAAAAATGTATTTGTTTACTTGTGCCGTGGGGAGGTTTCAAGGGGTGATTTGGCATCCATATCGTGTAGGGTAAAGGGGTTGTCTTGTAAGATTAGTCAAGGCATGCAAGCAAAGTTGGTTGGTAAGGATACCTGGGAAGGTGTTGATGAGCTTTATGGCAGCACCTAGAGGACCTTCAGAGGGTGATAGGTGGATCAGATGGCTCAACATTGTCTTCTTTCTCATCGGGTTATCTCATTTTTGTCCATATGGGATCAAGATAATAGGGTGACATGCGGATGAGGAATGACTGACGGGATGATGGATTATCTTGATTGTTACTTTTATCCCTTTATACTTTAGATTCACTATGCTAAATTTATCTCAACCTAATAATTTGACTTTGAAGTATGGTGGACATTTTATGTGATGAAAGATTCGCGGGCTGAGTGGTTCCAGGTTTTGGAATCTCTCGAGTTAGATCGATATAATTTTATAGGTTTAGTTTATAAATTCAATCCACTCGATGCTAACTAGTAACTATCATATCAGGGTTTTTTAAGTACATAATCATATCAGGTTTTGAACCAATGATCTCGTGAGATTTCAAAGTAATTGAAACTACTTGCTGCCCGTTCTTCTTGGGTCACCAAATTATAATTGGTAATTTATTTTCGAAGTTCATTTCCAATCCAATTACAGTTTTAATGTGTTCATACAAGCCCATTGACAATGAACTTTGCTGCTTGTTTAATGTTAACCATTCCTATCTCGTCTGTTTCCAACAAATATTAAATATCAGTAAACTAACTAGTTTGTGAATTTCATCTTAATAGGTAAGCAGGAACTATAATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGGTACAAAGCCAGAGCCGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGTTGAGCTAACCGTTCCGCCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAATATAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATATCGACGAGGTCGTAAAGAGGAAACAAGGAAAGAAGTCTAAATAAGATAACAGAAGCACAAAATCCCTCGTTGATCTTTATTCAGACACAAAGTGCCTCAGTTATGAATAATTGTTTTTGTTGTATGCATGTTTTTAGAGCATTCCATGAATTTAGCCATGCGACTGAACTGTAATTGCTTCAATGCCTATTCTTGAAATGTCATCTCATCGATCATTGATGTTGAATGTTGAAGAATGCAGACCATGCAAGAAAAGGCTATTTGAGTTGAGCGTTGTCGACCATTAACCTTTTTCTTTTTCTTTTCATGTGGGATGGAGCCTCTGACCACGTTGATCATTGAGGTTCAACTCTCATACACTTGCTTGTATTATGAGTAGAAATGCCCTCTTTTCTTTGCAAGATGTTTATGCCAATTTTCTCACGGACCTTGATTAAAAGTTTCAAACAAAACAGCCCTTTCCTAATCGCTTCAGTATCTAACATGATTTCTTTCTGTTTAGAAACTGATCGTCATTGTT

mRNA sequence

TGTTTTTCATATCTATTCACCAGCGACGAATCGAGTAAAAGTTACAAATAACAATACTACAACAAAATCAAATCCACGATAAACCAAACAATCAGCCCGAAAGGTGAACAAGATGTATTGAGAGAATCACCTAGGGTAAGCATCGGCGTCCTTTTTAGAAAATTTAGATATCTCCAAGTAATCATGTTCATCATTCATTCCAAGTAGAAGAAAACGACCGTCGAGGCAGGGTGTGAATGATGTGGCCATCGGTTTCAATAACTTCAATCCATGTCTCCGCAATTCCAAGTCCCTTCGATTTCAATCCGATAGCCATTCCAAATGAAAATAGGAAGAAAATAAATCATTACATAAAAACAAATGACGAATCTGGACAGAAACTAGAAGAATTAAAACTACCTGATGATGGAAGGCCGGAGGAGACTTAGGAGATAACTACATCGAGAGAATTTAAATCCTGGAATTAACTCTTCAGTAACAGCAGCGCCGCCGATCACATGGCGCCTCTCAAGAACGGCAACAGAGAGGCCGGCACGGGCAAGATAAGCAGCGGCTATCAAACCGTTGTGGCCTGCGCCGACGACGAGCGCGTCCCATTTCTTATCCTTCAGCACTGCGCGCGTTGCATTGCCGCTGAAGCTTCGATTCCACATAGCTTCAACTCTCTTTCTTGATCGGATTATGTATGCGAGTGGAAGCAGTTCCATGAATTTCCTGATTTTGGCGCCAATCGCTTTCCTCCATCAGGATGGTTTGTCCTTTTCAACACTTTCAGGACAATTGCTCTTTGGTTGTGATCTTCCTCCCCGTCGGCCGACCATTTCTTCGCTCGCCCTTCAAGCCGGCCGCCCCCCCTCCGCCGGTGTCCAGTTGCCCTCTTCGACACTGTTCGTCCTTCATCATTTTTTCCGCCTTCCCTGTTGTCCTCCTTCCCGCCAACACTTTGGATTTGGTGTTGAATTTGTTTTCTGACTGCACTTAGGTAAGCAGGAACTATAATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGGTACAAAGCCAGAGCCGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGTTGAGCTAACCGTTCCGCCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAATATAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATATCGACGAGGTCGTAAAGAGGAAACAAGGAAAGAAGTCTAAATAAGATAACAGAAGCACAAAATCCCTCGTTGATCTTTATTCAGACACAAAGTGCCTCAGTTATGAATAATTGTTTTTGTTGTATGCATGTTTTTAGAGCATTCCATGAATTTAGCCATGCGACTGAACTGTAATTGCTTCAATGCCTATTCTTGAAATGTCATCTCATCGATCATTGATGTTGAATGTTGAAGAATGCAGACCATGCAAGAAAAGGCTATTTGAGTTGAGCGTTGTCGACCATTAACCTTTTTCTTTTTCTTTTCATGTGGGATGGAGCCTCTGACCACGTTGATCATTGAGGTTCAACTCTCATACACTTGCTTGTATTATGAGTAGAAATGCCCTCTTTTCTTTGCAAGATGTTTATGCCAATTTTCTCACGGACCTTGATTAAAAGTTTCAAACAAAACAGCCCTTTCCTAATCGCTTCAGTATCTAACATGATTTCTTTCTGTTTAGAAACTGATCGTCATTGTT

Coding sequence (CDS)

ATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGGTACAAAGCCAGAGCCGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGTTGAGCTAACCGTTCCGCCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAATATAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATATCGACGAGGTCGTAAAGAGGAAACAAGGAAAGAAGTCTAAATAA

Protein sequence

MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK
Homology
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BLAST of Cmc08g0216291 vs. NCBI nr
Match: XP_008440709.1 (PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis melo] >KAA0036229.1 60S ribosomal protein L6 [Cucumis melo var. makuwa] >TYK12623.1 60S ribosomal protein L6 [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 2.3e-50
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEV+KRKQGKKSK
Sbjct: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 102

[Close]
BLAST of Cmc08g0216291 vs. NCBI nr
Match: XP_004143514.1 (uncharacterized protein LOC101220210 [Cucumis sativus] >XP_031743651.1 uncharacterized protein LOC101220210 [Cucumis sativus] >KGN48829.1 hypothetical protein Csa_003933 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 2.5e-49
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           DK RVHQFAAAVRSCKPPEVYKGKGIMY+DEV+KRKQGKKSK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 102

[Close]
BLAST of Cmc08g0216291 vs. NCBI nr
Match: XP_022950399.1 (uncharacterized protein LOC111453510 [Cucurbita moschata] >XP_022978580.1 uncharacterized protein LOC111478518 [Cucurbita maxima] >XP_023543123.1 uncharacterized protein LOC111803085 [Cucurbita pepo subsp. pepo] >XP_038881955.1 60S ribosomal protein L6, mitochondrial [Benincasa hispida] >XP_038881956.1 60S ribosomal protein L6, mitochondrial [Benincasa hispida] >XP_038881957.1 60S ribosomal protein L6, mitochondrial [Benincasa hispida] >XP_038881958.1 60S ribosomal protein L6, mitochondrial [Benincasa hispida] >KAG7034145.1 60S ribosomal protein L6, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.5 bits (519), Expect = 4.3e-49
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           DK RVHQFAAAVRSCKPPEVYKGKGIMYIDEV+K+KQGKKSK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 102

[Close]
BLAST of Cmc08g0216291 vs. NCBI nr
Match: XP_019059560.1 (PREDICTED: uncharacterized protein LOC109117197 [Tarenaya hassleriana] >XP_019059561.1 PREDICTED: uncharacterized protein LOC109117197 [Tarenaya hassleriana] >XP_019059562.1 PREDICTED: uncharacterized protein LOC109117197 [Tarenaya hassleriana] >XP_019059563.1 PREDICTED: uncharacterized protein LOC109117197 [Tarenaya hassleriana])

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-48
Identity = 97/102 (95.10%), Postives = 100/102 (98.04%), Query Frame = 0 

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVEL VPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           DK+RVHQFAA VRSCKPPEVYKGKGIMYIDEV+K+KQGKKSK
Sbjct: 61  DKHRVHQFAATVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 102

[Close]
BLAST of Cmc08g0216291 vs. NCBI nr
Match: PON38569.1 (Ribosomal protein [Parasponia andersonii] >PON82808.1 Ribosomal protein [Trema orientale])

HSP 1 Score: 201.8 bits (512), Expect = 2.8e-48
Identity = 97/102 (95.10%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEA+FFRFLKIVGVGYKARAE+AGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAQFFRFLKIVGVGYKARAESAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           DK RVHQFAAAVRSCKPPEVYKGKGIMYIDEV+K+KQGKKSK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 102

[Close]
BLAST of Cmc08g0216291 vs. ExPASy Swiss-Prot
Match: P26861 (60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL6 PE=3 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 8.1e-35
Identity = 67/100 (67.00%), Postives = 82/100 (82.00%), Query Frame = 0 

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFF FL+I+GVGYKA   A G +LYLKLG+SHE+ L V P+VRVFC K N++CCTG+
Sbjct: 1   MEAKFFCFLEIIGVGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGM 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK 101
           D  +V QFAA V+SCKPPEVYKGKGI Y +E++ +KQGKK
Sbjct: 61  DHQKVTQFAAIVKSCKPPEVYKGKGIQYRNEIIHKKQGKK 100

[Close]
BLAST of Cmc08g0216291 vs. ExPASy Swiss-Prot
Match: P82193 (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 8.2e-19
Identity = 49/98 (50.00%), Postives = 67/98 (68.37%), Query Frame = 0 

Query: 5   FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYR 64
           F + L++VGVGY+A  E  G+ L L LG+SH V + +P  ++V   +N  V  +G DK  
Sbjct: 123 FEKKLQLVGVGYRATVE--GKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSV 182

Query: 65  VHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           V QFAA +RS +PPE YKGKG+ Y+DEVV+RK+GK  K
Sbjct: 183 VGQFAATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGK 218

[Close]
BLAST of Cmc08g0216291 vs. ExPASy Swiss-Prot
Match: Q2JQN4 (50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=rplF PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 0 

Query: 5   FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYR 64
           F R L++VGVGY  RA   G  L L +GYSH VE+  PP +++    NNV+  +GIDK  
Sbjct: 83  FERRLELVGVGY--RASTQGNKLILNVGYSHPVEIPFPPGIQIAVEGNNVIVVSGIDKEL 142

Query: 65  VHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           V   AA +R+ +PPE YKGKGI Y+ E V+RK GK  K
Sbjct: 143 VGNTAARIRAVRPPEPYKGKGIRYVGEQVRRKAGKSGK 178

[Close]
BLAST of Cmc08g0216291 vs. ExPASy Swiss-Prot
Match: Q38US6 (50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) OX=314315 GN=rplF PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-18
Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 0 

Query: 5   FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYR 64
           F + L ++GVGY  RA+  G+ L L +GYSH VE+  P  V V    N  +  +GI K +
Sbjct: 82  FKKTLDLIGVGY--RAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQK 141

Query: 65  VHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           V QFAA +R  +PPE YKGKGI Y DE V+RK+GK  K
Sbjct: 142 VGQFAAEIRDVRPPEPYKGKGIRYTDEHVRRKEGKTGK 177

[Close]
BLAST of Cmc08g0216291 vs. ExPASy Swiss-Prot
Match: B2IK77 (50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIMB 8712) OX=395963 GN=rplF PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.3e-18
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 0 

Query: 5   FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYR 64
           F R L+I GVGYKA  +  G+ L L LGYSH++   +P  + +   K   V  TGIDK R
Sbjct: 83  FERKLEITGVGYKAAVQ--GKNLQLSLGYSHDISFPIPDGIAIAAPKPTEVSITGIDKQR 142

Query: 65  VHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK 101
           V Q AA +R+ +PPE YKGKG+ Y  E + RK+GKK
Sbjct: 143 VGQIAAEIRALRPPEPYKGKGVKYAGEFIFRKEGKK 176

[Close]
BLAST of Cmc08g0216291 vs. ExPASy TrEMBL
Match: A0A5D3CL55 (60S ribosomal protein L6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002100 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-50
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEV+KRKQGKKSK
Sbjct: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 102

[Close]
BLAST of Cmc08g0216291 vs. ExPASy TrEMBL
Match: A0A1S3B2D0 (60S ribosomal protein L6, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103485047 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-50
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEV+KRKQGKKSK
Sbjct: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 102

[Close]
BLAST of Cmc08g0216291 vs. ExPASy TrEMBL
Match: A0A0A0KJ40 (Ribosomal_L6 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G502670 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.2e-49
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           DK RVHQFAAAVRSCKPPEVYKGKGIMY+DEV+KRKQGKKSK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK 102

[Close]
BLAST of Cmc08g0216291 vs. ExPASy TrEMBL
Match: A0A6J1IQJ4 (uncharacterized protein LOC111478518 OS=Cucurbita maxima OX=3661 GN=LOC111478518 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.1e-49
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           DK RVHQFAAAVRSCKPPEVYKGKGIMYIDEV+K+KQGKKSK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 102

[Close]
BLAST of Cmc08g0216291 vs. ExPASy TrEMBL
Match: A0A6J1GFP3 (uncharacterized protein LOC111453510 OS=Cucurbita moschata OX=3662 GN=LOC111453510 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.1e-49
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           DK RVHQFAAAVRSCKPPEVYKGKGIMYIDEV+K+KQGKKSK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 102

[Close]
BLAST of Cmc08g0216291 vs. TAIR 10
Match: AT2G18400.1 (ribosomal protein L6 family protein )

HSP 1 Score: 193.7 bits (491), Expect = 7.0e-50
Identity = 94/102 (92.16%), Postives = 95/102 (93.14%), Query Frame = 0 

Query: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60
           MEAKFFRFLKIVGVGYKARAE AGR LYLKLGYSHEVEL VPPAVRVFCFKNNVVCCTGI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGI 60

Query: 61  DKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           DK RVHQFAA VRSCKPPE YKGKGIMY DEVVK+KQGKKSK
Sbjct: 61  DKQRVHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

[Close]
BLAST of Cmc08g0216291 vs. TAIR 10
Match: AT1G05190.1 (Ribosomal protein L6 family )

HSP 1 Score: 90.5 bits (223), Expect = 8.4e-19
Identity = 45/98 (45.92%), Postives = 66/98 (67.35%), Query Frame = 0 

Query: 5   FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYR 64
           F + L +VGVGY+A  +  G+ L L LG+SH V++ +P +++V   +N  +  +G DK  
Sbjct: 126 FEKKLILVGVGYRATVD--GKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSE 185

Query: 65  VHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK 103
           + QFAA VR  +PPE YKGKG+ Y DE+V+RK+GK  K
Sbjct: 186 IGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGK 221

The following BLAST results are available for this feature:
BLAST of Cmc08g0216291 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008440709.12.3e-5099.02PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis melo] >KAA0036229.1 ... [more]
XP_004143514.12.5e-4997.06uncharacterized protein LOC101220210 [Cucumis sativus] >XP_031743651.1 uncharact... [more]
XP_022950399.14.3e-4997.06uncharacterized protein LOC111453510 [Cucurbita moschata] >XP_022978580.1 unchar... [more]
XP_019059560.12.1e-4895.10PREDICTED: uncharacterized protein LOC109117197 [Tarenaya hassleriana] >XP_01905... [more]
PON38569.12.8e-4895.10Ribosomal protein [Parasponia andersonii] >PON82808.1 Ribosomal protein [Trema o... [more]
BLAST of Cmc08g0216291 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P268618.1e-3567.0060S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL6... [more]
P821938.2e-1950.0050S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=... [more]
Q2JQN41.1e-1850.0050S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=rpl... [more]
Q38US64.1e-1848.9850S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) OX=314... [more]
B2IK775.3e-1848.9650S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 ... [more]
BLAST of Cmc08g0216291 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CL551.1e-5099.0260S ribosomal protein L6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3B2D01.1e-5099.0260S ribosomal protein L6, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103485047 ... [more]
A0A0A0KJ401.2e-4997.06Ribosomal_L6 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G50267... [more]
A0A6J1IQJ42.1e-4997.06uncharacterized protein LOC111478518 OS=Cucurbita maxima OX=3661 GN=LOC111478518... [more]
A0A6J1GFP32.1e-4997.06uncharacterized protein LOC111453510 OS=Cucurbita moschata OX=3662 GN=LOC1114535... [more]
BLAST of Cmc08g0216291 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G18400.17.0e-5092.16ribosomal protein L6 family protein [more]
AT1G05190.18.4e-1945.92Ribosomal protein L6 family [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019906Ribosomal protein L6, bacterial-typePRINTSPR00059RIBOSOMALL6coord: 65..86
score: 56.45
coord: 23..39
score: 44.97
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 12..88
e-value: 3.5E-16
score: 59.6
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 5..102
e-value: 1.1E-33
score: 117.2
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 5..100
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 1..101
NoneNo IPR availablePANTHERPTHR11655:SF17RIBOSOMAL PROTEIN L6-RELATEDcoord: 1..101
IPR002358Ribosomal protein L6, conserved sitePROSITEPS00525RIBOSOMAL_L6_1coord: 78..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0216291.1Cmc08g0216291.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0016020 membrane
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome