Cmc08g0213961 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0213961
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description50S ribosomal protein L7/L12
LocationCMiso1.1chr08: 4259926 .. 4261486 (+)
RNA-Seq ExpressionCmc08g0213961
SyntenyCmc08g0213961
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTATTATTTTTAGTTAAGAGAAATTGAGTTTAAATTTAGACTTATGAGAGTATGAGAAGTAAATTGAGAAATACTAAAATAAAATAGATTTAAAAAACTACAATAACCAAAATTGAATGTAAATCAAAATGATGTGTGAAATCCTTCTGTTAAAGGGTAACGTGGACTTTTTGCCTATTTTTGGACTATTATTCAAACTCTTGACATTGTAAGACATATTTCAAAATTTCAAGTAGTTTTGAGGGTCACTAATCGAGAGGTGAAACCCTAATGAATTCAGACAACCGTAGAACCTCGGAGTCGGCGCTTCAATGAAACACGATTCTCTGTGACTTACCAATATCGTCGTCGGTCTCCGCCAGAAACCCTAATATCTCGAAATGCCATCAATTGCCTCCAAACTTCCGGCCAAATCTTTAGTGAGACTTCTCACTATCGCTCCAAGACCATTGCTAGTTCGGTCCCTCAGCACCGTCGCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGACCTCAATAAAATCGAACGACACGACTATGCCATCCTCTTCGGGTATAAAATGGGTTTAAACAAATACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGCTCAGCCGCCGCCGGATCTGCCGCCGCCGAAACAAAAGAAGCTGAGAAAACTGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCAGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACAAAAGATCAAGGGAACCCAATTATTGAGAAGCTTAAGGAGTTGGGAGCTACTGCGGTATTGGAATGACTTTTTTTTTCTTCTCTGTCATTTCATACGTTCTTTTTGGAGTAAAATAATGCTGCCCTTGTTAGAGGACTATCGAAATTTTTTCAAAGTGCCAAGATTTATGAAGGTTACAATTCAAAGTCATATTGTTGCTTGATTCGATATTCAAAGTACATTTGGTTTTTTCCCCTTTGGCATTTCTCCGCCGGATTTGCATGAGAATCAGTTTCATTCTGACGTTCTTAGCCGGACCTGAAGAATTTAGCCAATCTATAATCCCCATGTGAACGGAGAGGATGAATCTGTCCTAAAAGCTCTCTCTCGTGATAGAAGAAAAATCTCTACTTCTTGTTTAGTTCAATTCCCCGAGGGAAAGCTATATGTATTTTGTTCTTTCCATGAGATTGTTGAAGAACAATTAAACAATCTTAATTATGTTGCTTCTCTTCTCATGTGGGCTTAAATTCTTGGCAAAAAGTTGTGAAAAATTGTTCTTTGTTCTTTGTTCTTTGACGATCGATTTATTTCTTCCTTTTTTTTCATGGGTTTAAGGGATTTTTGTAATCTGACTTATATCTAATTAATCAAATTCAATGATAAATTCTCCCTTTTTTTCCTTCACATGTATATATTGAAGTTAAAGTCATGGTTTTATTAGTCTTGTAATGCATGGCCGAGTGCAGATAGAACAAA

mRNA sequence

TATTATTATTTTTAGTTAAGAGAAATTGAGTTTAAATTTAGACTTATGAGAGTATGAGAAGTAAATTGAGAAATACTAAAATAAAATAGATTTAAAAAACTACAATAACCAAAATTGAATGTAAATCAAAATGATGTGTGAAATCCTTCTGTTAAAGGGTAACGTGGACTTTTTGCCTATTTTTGGACTATTATTCAAACTCTTGACATTGTAAGACATATTTCAAAATTTCAAGTAGTTTTGAGGGTCACTAATCGAGAGGTGAAACCCTAATGAATTCAGACAACCGTAGAACCTCGGAGTCGGCGCTTCAATGAAACACGATTCTCTGTGACTTACCAATATCGTCGTCGGTCTCCGCCAGAAACCCTAATATCTCGAAATGCCATCAATTGCCTCCAAACTTCCGGCCAAATCTTTAGTGAGACTTCTCACTATCGCTCCAAGACCATTGCTAGTTCGGTCCCTCAGCACCGTCGCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGACCTCAATAAAATCGAACGACACGACTATGCCATCCTCTTCGGGTATAAAATGGGTTTAAACAAATACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGCTCAGCCGCCGCCGGATCTGCCGCCGCCGAAACAAAAGAAGCTGAGAAAACTGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCAGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACAAAAGATCAAGGGAACCCAATTATTGAGAAGCTTAAGGAGTTGGGAGCTACTGCGGTATTGGAATGACTTTTTTTTTCTTCTCTGTCATTTCATACGTTCTTTTTGGAGTAAAATAATGCTGCCCTTGTTAGAGGACTATCGAAATTTTTTCAAAGTGCCAAGATTTATGAAGGTTACAATTCAAAGTCATATTGTTGCTTGATTCGATATTCAAAGTACATTTGGTTTTTTCCCCTTTGGCATTTCTCCGCCGGATTTGCATGAGAATCAGTTTCATTCTGACGTTCTTAGCCGGACCTGAAGAATTTAGCCAATCTATAATCCCCATGTGAACGGAGAGGATGAATCTGTCCTAAAAGCTCTCTCTCGTGATAGAAGAAAAATCTCTACTTCTTGTTTAGTTCAATTCCCCGAGGGAAAGCTATATGTATTTTGTTCTTTCCATGAGATTGTTGAAGAACAATTAAACAATCTTAATTATGTTGCTTCTCTTCTCATGTGGGCTTAAATTCTTGGCAAAAAGTTGTGAAAAATTGTTCTTTGTTCTTTGTTCTTTGACGATCGATTTATTTCTTCCTTTTTTTTCATGGGTTTAAGGGATTTTTGTAATCTGACTTATATCTAATTAATCAAATTCAATGATAAATTCTCCCTTTTTTTCCTTCACATGTATATATTGAAGTTAAAGTCATGGTTTTATTAGTCTTGTAATGCATGGCCGAGTGCAGATAGAACAAA

Coding sequence (CDS)

ATGCCATCAATTGCCTCCAAACTTCCGGCCAAATCTTTAGTGAGACTTCTCACTATCGCTCCAAGACCATTGCTAGTTCGGTCCCTCAGCACCGTCGCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGACCTCAATAAAATCGAACGACACGACTATGCCATCCTCTTCGGGTATAAAATGGGTTTAAACAAATACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGCTCAGCCGCCGCCGGATCTGCCGCCGCCGAAACAAAAGAAGCTGAGAAAACTGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCAGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACAAAAGATCAAGGGAACCCAATTATTGAGAAGCTTAAGGAGTTGGGAGCTACTGCGGTATTGGAATGA

Protein sequence

MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAILFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Homology
[Close]
BLAST of Cmc08g0213961 vs. NCBI nr
Match: XP_008440399.1 (PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >KAA0036410.1 50S ribosomal protein L7/L12 [Cucumis melo var. makuwa] >TYK12806.1 50S ribosomal protein L7/L12 [Cucumis melo var. makuwa])

HSP 1 Score: 307.0 bits (785), Expect = 1.0e-79
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60
           MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Cmc08g0213961 vs. NCBI nr
Match: XP_004141864.1 (uncharacterized protein LOC101203973 [Cucumis sativus] >KGN48616.1 hypothetical protein Csa_003359 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 5.5e-78
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60
           MPSIASKLPAKSLVRLLT+APRPLLVRSLSTVAEERTQKLERIADELLDL KIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF YKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Cmc08g0213961 vs. NCBI nr
Match: XP_038882677.1 (50S ribosomal protein L7/L12 [Benincasa hispida])

HSP 1 Score: 291.2 bits (744), Expect = 5.7e-75
Identity = 159/168 (94.64%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60
           MPSIASKLPAK+LVRLLT+APRPLLVRSLSTV++ERTQKLERIADELLDL KIERHDYAI
Sbjct: 1   MPSIASKLPAKALVRLLTVAPRPLLVRSLSTVSKERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF  KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Cmc08g0213961 vs. NCBI nr
Match: XP_022132437.1 (uncharacterized protein LOC111005295 [Momordica charantia])

HSP 1 Score: 284.3 bits (726), Expect = 7.0e-73
Identity = 155/168 (92.26%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60
           MPSIASKLPAK+LVRLLT+APRPLLVRSLSTV++ER QKLERIADELL L+KIERHDYAI
Sbjct: 1   MPSIASKLPAKALVRLLTVAPRPLLVRSLSTVSQERIQKLERIADELLGLSKIERHDYAI 60

Query: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF  KMGLNKYGPAVSGLSAPGSA+AGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSASAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT+LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Cmc08g0213961 vs. NCBI nr
Match: XP_022977261.1 (uncharacterized protein LOC111477630 [Cucurbita maxima])

HSP 1 Score: 283.5 bits (724), Expect = 1.2e-72
Identity = 156/168 (92.86%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60
           M SIASKLPAK+LVRLLT+A RPLLVRSLSTV+EERTQKLERIADE+LDL KIERHDYAI
Sbjct: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60

Query: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF  KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Cmc08g0213961 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.9e-15
Identity = 52/128 (40.62%), Postives = 73/128 (57.03%), Query Frame = 0 

Query: 40  LERIADELLDLNKIERHDYAILFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKT 99
           +E I ++L  L  ++  + +     + G++   P     SA G +AA         AEKT
Sbjct: 4   IESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAAGESAAA-------VAEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA  KI +IKEVR  T+LGLKEAKD VE  P  LK GV+KD+   + +KL+
Sbjct: 64  EFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKKLE 123

Query: 160 ELGATAVL 168
             GAT +L
Sbjct: 124 AAGATIIL 124

[Close]
BLAST of Cmc08g0213961 vs. ExPASy Swiss-Prot
Match: A9BDG4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0 

Query: 37  TQKLERIADELLDLNKIERHDYAILFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEA 96
           ++K + I D L  L+ +E  +         G++    A   ++APG+    SAA E  E 
Sbjct: 2   SKKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAGGGASAAGEAAE- 61

Query: 97  EKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIE 156
           EKT FD+ LE FDAAAKIK++KEVR  T LGL EAK +VE  P  +K+G +K+    + +
Sbjct: 62  EKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASKEDAEALKK 121

Query: 157 KLKELGATAVLE 169
            ++ +G    L+
Sbjct: 122 AIEAVGGKVTLK 132

[Close]
BLAST of Cmc08g0213961 vs. ExPASy Swiss-Prot
Match: A6LKB9 (50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429) OX=391009 GN=rplL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 59/134 (44.03%), Postives = 78/134 (58.21%), Query Frame = 0 

Query: 38  QKLERIADELLDLNKIERHDYAILFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAE 97
           +KLE+I +E+  L   E  +   +   K G++   P V  +   G+AA G AAAE    E
Sbjct: 2   EKLEQIVNEIEQLTVAELAELVKMLEDKFGVSASAP-VMAMPVAGAAAGGGAAAE----E 61

Query: 98  KTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKV---PVVLKKGVTKDQGNPI 157
           KT FD+ L+ F  A KI +IK VR  T LGLKEAKDLVEK      V+K+GV KD+   I
Sbjct: 62  KTEFDVVLKSF-GAKKINVIKVVREITGLGLKEAKDLVEKAGTPDAVIKQGVNKDEAEEI 121

Query: 158 IEKLKELGATAVLE 169
            +KL+E GA   L+
Sbjct: 122 KKKLEEAGAEVELK 129

[Close]
BLAST of Cmc08g0213961 vs. ExPASy Swiss-Prot
Match: Q9L5W4 (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494 GN=rplL PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-14
Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = 0 

Query: 40  LERIADELLDLNKIERHDYAILFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKT 99
           +E I ++L  L  I+  + +     + G++         SAP +A A +   +   AEKT
Sbjct: 4   IESIVEKLSSLTLIQAAELSKRLEEEWGVS--------ASAPVAAVAPAVXXDVAVAEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA +KI +IKEVR+ TDLGLKEAK+LVE +   L+ GV+KD+ N + +KL+
Sbjct: 64  EFEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKKKLE 123

Query: 160 ELGATAVL 168
             GAT  L
Sbjct: 124 AAGATISL 123

[Close]
BLAST of Cmc08g0213961 vs. ExPASy Swiss-Prot
Match: Q7U3T9 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) OX=84588 GN=rplL PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.5e-14
Identity = 51/130 (39.23%), Postives = 76/130 (58.46%), Query Frame = 0 

Query: 39  KLERIADELLDLNKIERHDYAILFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEK 98
           K + I + L  L+ +E  +         G++    A   ++APG AAAG    E  E EK
Sbjct: 4   KTDEILESLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPG-AAAGGGGGEVAE-EK 63

Query: 99  TVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKL 158
           T FD+ LE FDAAAKIK++K VR  T LGL +AK LVE  P  +K+G++KD+   + +++
Sbjct: 64  TEFDVILESFDAAAKIKVLKAVRNATGLGLGDAKALVEAAPKPIKEGISKDEAEALKKEI 123

Query: 159 KELGATAVLE 169
           +E+G    L+
Sbjct: 124 EEVGGKVTLK 131

[Close]
BLAST of Cmc08g0213961 vs. ExPASy TrEMBL
Match: A0A5D3CQX4 (50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003980 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.9e-80
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60
           MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Cmc08g0213961 vs. ExPASy TrEMBL
Match: A0A1S3B113 (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103484859 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.9e-80
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60
           MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Cmc08g0213961 vs. ExPASy TrEMBL
Match: A0A0A0KLI9 (Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G495700 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.7e-78
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60
           MPSIASKLPAKSLVRLLT+APRPLLVRSLSTVAEERTQKLERIADELLDL KIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF YKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Cmc08g0213961 vs. ExPASy TrEMBL
Match: A0A6J1BTU0 (uncharacterized protein LOC111005295 OS=Momordica charantia OX=3673 GN=LOC111005295 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.4e-73
Identity = 155/168 (92.26%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60
           MPSIASKLPAK+LVRLLT+APRPLLVRSLSTV++ER QKLERIADELL L+KIERHDYAI
Sbjct: 1   MPSIASKLPAKALVRLLTVAPRPLLVRSLSTVSQERIQKLERIADELLGLSKIERHDYAI 60

Query: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF  KMGLNKYGPAVSGLSAPGSA+AGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSASAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT+LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Cmc08g0213961 vs. ExPASy TrEMBL
Match: A0A6J1IJE5 (uncharacterized protein LOC111477630 OS=Cucurbita maxima OX=3661 GN=LOC111477630 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.8e-73
Identity = 156/168 (92.86%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60
           M SIASKLPAK+LVRLLT+A RPLLVRSLSTV+EERTQKLERIADE+LDL KIERHDYAI
Sbjct: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60

Query: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF  KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Cmc08g0213961 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-39
Identity = 92/161 (57.14%), Postives = 117/161 (72.67%), Query Frame = 0 

Query: 10  AKSLVRLLTIAPRPLLVRSLSTVA--EERTQKLERIADELLDLNKIERHDYAILFGYKMG 69
           ++SL  L    P     R L  VA  E RT+KLERIAD+LL LN+IE +DY++LF +K+G
Sbjct: 10  SRSLGYLHRTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIG 69

Query: 70  LNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLG 129
           LN+YG AV   +  GS    SA+ ETK AEKT FD+KLEKF+AA+KIK+IKE+R FTDLG
Sbjct: 70  LNRYGSAV---AVTGSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLG 129

Query: 130 LKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           LKEAK LVEK PV++K G+TK++   I+EKLK +GA   LE
Sbjct: 130 LKEAKALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVALE 167

[Close]
BLAST of Cmc08g0213961 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 109.0 bits (271), Expect = 3.8e-24
Identity = 72/163 (44.17%), Postives = 102/163 (62.58%), Query Frame = 0 

Query: 12  SLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAILFGYKMGLNK- 71
           S V+L TI       RS S+ A + ++ + +I +EL +L  +E  D   +   K+ +++ 
Sbjct: 23  SSVQLFTIQS-----RSYSSPATQ-SENVSKIVNELSNLTLLETMDLTEILRQKLNISEL 82

Query: 72  --YGPAVSGLSAPGSAAAGSAAAETKEAE---KTVFDIKLEKFDAAAKIKIIKEVRTFTD 131
                 + G+S PGS A+ SA  E KE +   KT FD+ L+ +DA +KIK+IKEVRT T 
Sbjct: 83  PVMAAMMPGMSLPGSGASKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITA 142

Query: 132 LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           LGLKEAKDLVEK P +LKKGV+K++   IIEKLK +GA   +E
Sbjct: 143 LGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of Cmc08g0213961 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 108.6 bits (270), Expect = 4.9e-24
Identity = 65/142 (45.77%), Postives = 90/142 (63.38%), Query Frame = 0 

Query: 37  TQKLERIADELLDLNKIERHDYAILFGYKMGLNKYGPAVS----------GLSAPGSAAA 96
           T ++ R+ DE+  L  +E  +   +   K G+ +  P V+          G+   G   +
Sbjct: 68  TDRVFRLVDEISSLTLLEISELGSIIMKKKGMTEL-PTVAVMKPGAGGGVGVGGGGGMVS 127

Query: 97  GSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGV 156
            S  +E  + EKTVF+IKLE F+A+AKIKIIKE+R+FTDLGLKEAK LVEK P +LK G+
Sbjct: 128 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 187

Query: 157 TKDQGNPIIEKLKELGATAVLE 169
           +K++G  I+EKLK LGA  VLE
Sbjct: 188 SKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of Cmc08g0213961 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 108.6 bits (270), Expect = 4.9e-24
Identity = 65/142 (45.77%), Postives = 90/142 (63.38%), Query Frame = 0 

Query: 37  TQKLERIADELLDLNKIERHDYAILFGYKMGLNKYGPAVS----------GLSAPGSAAA 96
           T ++ R+ DE+  L  +E  +   +   K G+ +  P V+          G+   G   +
Sbjct: 68  TDRVFRLVDEISSLTLLEISELGSIIMKKKGMTEL-PTVAVMKPGAGGGVGVGGGGGMVS 127

Query: 97  GSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGV 156
            S  +E  + EKTVF+IKLE F+A+AKIKIIKE+R+FTDLGLKEAK LVEK P +LK G+
Sbjct: 128 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 187

Query: 157 TKDQGNPIIEKLKELGATAVLE 169
           +K++G  I+EKLK LGA  VLE
Sbjct: 188 SKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of Cmc08g0213961 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 102.1 bits (253), Expect = 4.6e-22
Identity = 62/133 (46.62%), Postives = 85/133 (63.91%), Query Frame = 0 

Query: 37  TQKLERIADELLDLNKIERHDYAILFGYKMGLNKYGPAVS-GLSAPGSAAAGSAAAETKE 96
           + K+  +A+ +  L+  ER          + L K     S G+ A     AG+     ++
Sbjct: 57  SSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAGNV---EEK 116

Query: 97  AEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPII 156
            EKT FD+KLEKF+A+ KIK+IKEVRTFT LGLKEAK+LVEKVP +LK+GVTK++ N II
Sbjct: 117 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 176

Query: 157 EKLKELGATAVLE 169
            K+K +G  AV+E
Sbjct: 177 AKIKAVGGIAVME 186

The following BLAST results are available for this feature:
BLAST of Cmc08g0213961 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008440399.11.0e-79100.00PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >KAA0036410.1 50S ribosom... [more]
XP_004141864.15.5e-7898.21uncharacterized protein LOC101203973 [Cucumis sativus] >KGN48616.1 hypothetical ... [more]
XP_038882677.15.7e-7594.6450S ribosomal protein L7/L12 [Benincasa hispida][more]
XP_022132437.17.0e-7392.26uncharacterized protein LOC111005295 [Momordica charantia][more]
XP_022977261.11.2e-7292.86uncharacterized protein LOC111477630 [Cucurbita maxima][more]
BLAST of Cmc08g0213961 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P411896.9e-1540.6350S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=... [more]
A9BDG41.5e-1437.8850S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=930... [more]
A6LKB91.5e-1444.0350S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CI... [more]
Q9L5W42.6e-1440.6350S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494... [more]
Q7U3T94.5e-1439.2350S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) OX=84588 GN=rp... [more]
BLAST of Cmc08g0213961 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CQX44.9e-80100.0050S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3B1134.9e-80100.0050S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103484859 PE=4 SV=1[more]
A0A0A0KLI92.7e-7898.21Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4957... [more]
A0A6J1BTU03.4e-7392.26uncharacterized protein LOC111005295 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1IJE55.8e-7392.86uncharacterized protein LOC111477630 OS=Cucurbita maxima OX=3661 GN=LOC111477630... [more]
BLAST of Cmc08g0213961 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G37660.11.1e-3957.14Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT4G36420.13.8e-2444.17Ribosomal protein L12 family protein [more]
AT1G70190.14.9e-2445.77Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT1G70190.24.9e-2445.77Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT3G06040.14.6e-2246.62Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 101..167
e-value: 9.8E-21
score: 73.9
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 94..167
e-value: 6.2E-21
score: 76.3
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 97..167
NoneNo IPR availablePANTHERPTHR45987:SF1150S RIBOSOMAL PROTEIN L7/L12coord: 3..168
IPR000206Ribosomal protein L7/L12PANTHERPTHR4598739S RIBOSOMAL PROTEIN L12coord: 3..168
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 39..167
e-value: 3.26843E-31
score: 107.241

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0213961.1Cmc08g0213961.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome