Cmc08g0210011 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0210011
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	RNA polymerase II transcription factor B subunit 2
Location	CMiso1.1chr08: 1994067 .. 2002290 (+)
RNA-Seq Expression	Cmc08g0210011
Synteny	Cmc08g0210011

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTTTTCTCCCATCTTTTCTTTCATTTGTTGTGAGTTTGAGTTAGGTTAAACTTTATGTATATCTCCAAATTAATTTAAATATAATTTATAGTAATATACAAATTAATTTTGTACTTTTTTTACAACAATTTGATACTTTAGTTTTAAGTTATTAGCAAGTATTTTAGTTATTATTACTTTTTAAATCTAGCAACATGTCGAGTTTCAAGTTGCATATCTGTCCAAGTCGCCGCTGCCGTCCGATCACCTTTCAGCGGGTGTTGACGCGCGAGGTTCCAAATTTTATACTTAGGGTTTCCATTTTTACAAAGCGGTAATTGGACAATTCATATATCCATCTGTCTAAAAAAAAGAAGTTTAAATTGAAAGCTCATCTAACATGGCAATTTCCCGACCCAATAGCTTTTTTTATAATCAAGAAGAATTGGACATTCAACTACGTGTCATTCTTCGTCTTCGGTCTTCCGAATGAGCAAGCAGAGTGTCAATCTACTAAGGTTAACTTTGAATTAGTTGATAATTGATTGATTTCAGAGGATCCCAAGACTTCACCATTTGCTATAAATCTCACTCTCGACCTGGAAGCTGCAATTTTTTTTTTTAATTCGTGATTCTGTGCCTAAAGGACTAGCAAAGCTAATCCAAAATGCCTCAAGTAAAGATCATAGCGAAGAATTTTATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGATCAACTCTATGAGAATGCATTCATCTGCGAAGCCATTCTCAGGTCCTTGCTTTCCGTTTTTAACTGCTTTAATTGGTTGGGGTCGTATTTATAATTGAGACCACTGAGCTTGCTTGTTCATAATACGATGTCATTGAAACTGTTTTTTTTTTTAATTGATTGAGGTGTTCTTTATTATTATTTTCTTTTAATTAGTTTTTTTTTTTTTCATTTTTCCTTGGCCAAATTTAGGTATTTGCTAATGAATTTAACTTAATAGTAGCTAGTCGATCATAGTTTTGGAGGTTATAATACAAGAGTGCCGATCGTCTTTTGTAATCAGGTCACTTCCGCCACTGGCTAAGAAGTTTGTTTTACAAATGTTATACATTGATGCTCCAGTTTCAGCCAAGTCCATGGAGGAGTGGGTGCTCCCAGATGGAGTCTCAAAGTATAAGGTTGCTGTTGATCGATTGATTCAATTGAGAGTATTCATTGAGACTGCAGATAGGTGCTATTCTCTTCCCACATTTTCTTAAGAATTTGATATCTTTTCACAATTCTTCAAAAAATGCATTCTTAGTTAAATAGATCCAAGAAAGCTGTCATTGAAGAGTTCAAGAGAGAGGCTACGTTTGTGGAGTGTTGTTTTATTATTATTTTTAGCTTCATCTTCTTCGTGGATGTTTCTTTCCAAGAGTTGATAGATTGCCTTCGTGTTCATAATTCATATCACGATATCATCGGAATTGAGAGGTTTCTGCCAGGAGAACTTTAATTATGAGCTTGTTCTGCAATATGTAAATGCTTTTGCGTTACTTCTGTTTTGATCTCACTTAAATTGTTTATAATTCTATCAGCAGTTTTGCATTGTTTGTAGTCCTCAACCCTATCCTAAATTGTAATATTTTCTGTGAATCCCTATTTTATTTATAGGAAAAGAGAAACAACCTACCGGCTAAATCCAACTTTCCAAGCAAACCTCCAAAAGCTTTTAATACATGGGTAAGTCTTCTCTCAACTTTGCTCAATGAATGCATTTCTAAACCAGATATGCTAGGATGGATACATGATTTATCTCATTTCCTTTCTACTCAGCACAGACGTTCTGATGCATAGATCTTTCTTAATAAATGCACATTTTCTTTTACTTGCTCCCTTATTCATATTCATTAAGTTCAAGTAGATGATTACTTATTTTCTTTAAAAAGAAGCTGATCCTGGAGCTTAGACTCCATGATTTTAACATTTTAAAGTGATTTACTCTTGGTTTAGAAAATGATAATGAATTTGGGATCTTGCAGTGAAGTTCTAGCCAGAGAACCGATGCCTTCTAATATAACCGTGAGGCTTCCAAGTTTGGAAGATCTTGAGGCTTATGCTCTGGATCAGTGGGAGGTTGGACAGTCATCAAAATGATTTTAATAATCTGTTTTTTTAGTTCAATCTTTTCTAGTTTAGTCTTCGGCTAGTATTGATTCCATCTCTTAGACTCAATCTAAGGCAACCATCTTCTAAGTTGATTACTGTCCAAGTTTTAACTGTGGATATTCTTTTGACCTGTTATTGTCTTAGTTCAGTGCTTCTTGCTGCAATTGATAAACTCGGGCCAAGCAGAGAAGCCATCAAATATTAGTTCTTCTGTGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAGAGGTTAAAATCTTGTTCAATGTACTCTAGCTTATATTTTGCGAGATATCTGATAAAATGTTATGTATGGTATTCTAGGGATAAAGAAGCTCCACGATTAACTGAGAGTGGTTTCCAGTTCTTGGTATGAATCACATGAACCATAGACTTTTTGAAATCCTCACCAATCTGACTTACCAGGGATTCTTGTGATATGCAAACTTCAGTTGATGGAAACAAATGCACAACTTTGGTATATCATCCGAGAATATATATCTAACGCTGAGGTTTGTGTTTTCCTTTTTTATTGTCATAGCCTATTGCCTTCCTCCAAGGTGTGTGTATATATATTCTATTTCTGTCATTAATTTTCTATTTGAATCTGATTAATGGATGGGTCTACTGTAACTCATAATGAAAAGCAACTATTATTAATCTTAAGACCCTTTTCTTTAGTTTTACTGGACTGTATAATTTATTTATTTATTTTCTTCTAATAACTCGTATTCCTCTCTTGTAAATGCATGCTTAATCAATATGGTTCAGGAGCGAGGTGTGGATCCTGCAGATTTGATTTCTTTTCTGCTAGAGCTTAGTTTTCACGTCACAGGAGAGGTATCAATTCCTTGAATTTCTTTTTACATCTTTATCTTTTATTATTGTTGTCTTCTGTTATCCCATCGTAGAACTCTCCTTGAAGTTTTGTTGCTTCATATCATTTTAATACCAAACTACTTTGGATTGGTTCAGGAGTCTATATATATATATATATATATTAACACAGATTGATTGTCTGTAGTTCGCTATATTGTGCATCTATCCTAATTTACCTTTTCTTGTTTATGGCAAGGTTGAATTTGATTGAAATTTTATCAATACTCTTTTCATTTATATAATGTCTGTCATTCTTTTTTTACAAGTTTGTGTGTTCTAGAAAATAAACAAAGGGGTTTAGTTCTGTTTCCCTCCATCATAAGGGTGAACAAGTGTATTAGTTATGGAGAATATAGTACAAGTATAGTTAACGCATCAACCCAATTAATGACGACTGGGATTATAGTAAATTCCTCCCTTTGACATTCATAAATAAGAATAGTAAATGCATTTAGTTTGATCGTCTTACATAATCATCTTTCCTTCTAAATTTATCCTTAAAATCTCTGCAGTTCCTTTCATCAGTGTTTGCTGCATTGTGGTCAAGTTTCCATATTTCTTGTGCATGTGATGCACAAGAATCATATGGGTTTTCCTTTGAGAAAGTTTGGCTTGTATTAATCCCCCTCATAACATGATGCAAAATGAAAAATCTAATTTTCTTTGGGTTTCCATGCCTCCACCTCAGGTAACCTTAAACAAGTTACTACTCTATTGGTCAAGAACGGCAGTAATTTCAAGTTAGAGTTAGTCTAAAGTCCATCTCAGCCTGTCAGGTTGCCATTTTGGACTGTGGTTTTATTTCAATCTTTTAGTTCCTCTAATTCCAGCAGGCAGCGAACTCTTCATTTTAAAAACTAGGCAATTGAATTCTGTAGAAAACTTGCTTTAGAGGAATATTACTTTTATGGACTATGGAGGTTTGTCCATTGCCAATTTTGAAGGAAAAAGCTCCTAATTCTTTTTACACCTTACCACAAACTTCCAAGGGCTGCTGCTTCTCAATTTTTTATGGTGAACAAATAGATGTAAATCAAATTAGACGCAAGTGCTAAATTTCTCTCCTTCAGACTGCCTTCTCCAATTCCACGTTCTTTTGGTAGTTAGACACTTTCCTCCAATCAGCTACATGGCTGGCATTGTCAATACTCTCTCTGGCCCATAGGAGGTTTCTCAACATACTCTCTAAAAGCTTAGCCAAATAAATAGGCGTACTCAACATTGTAAATTGCACTAAGGAGAGCCTTTCCCCGTCAGACAAAAAGGCATTTACGCACATTTTTTCTTTGTGAAACCTCTGGAACTGATTTTGGTTCAATTTCCGTAGCTCCTAGTGGGTATTAACCTTTTTACAAATTATCCCCTTTGAAATTTCAGTAAGAAATAAAAAACAAAAAAGAAACGACCTAGAGTAGCAATAATCCATTCAACCTTAAGACACATGCCCTAAATGTGTTCTACTTTCACCACGGGCAATTTTTGGATATTCCATTGGGAACCTTTTGTACCCTGATTTTGTGTGGGCTATATTACTTCAACAATCTAACTCCAAAACCTTCTTCATCCCTCTCTTCCATCTCTTAATCAATAACACATGCACATTAAACCTCTGATAACTATAGTAACTACTAATAATCCATATTACTAACTTTTTTATAAAACTAATCCCTATATTATTTACTATCCAATCACCGACATGTTTCTTCTTGGTCTGTAGGCTTATGATATTGATACACTGTCAGATGAACAGAGGTATGCTATCAAGGACCTTGCTGATCTGGGACTAGTTAAGCTTCAGCAGGTTTTCGGCTAGCCTCTGCTGCTTTATTGAATACGACCTTTGCTCAAAGTTTTACTTTATTTTAACTTCACCTTTTTCTTTTTCTGTTGTTCCTTTTGTTGTTGATTTGTCCAGGGTAGAAAAGAGAGTTGGTTCATACCTACTAAATTAGCTACAAATCTTTCAATGAGTTTGGCAGATTCCTCTTCAAGGAAACAAGTGAGTGTTTCTGAATGCAAATTATTTTTAGATTTGGTATATTTCTATTCAGTTCCATTTTTTTTATGCTTACCAAGTTTTTAGAGGGTGTTTGGCTCGCGAAGTTGGAGTTAAGAGAGTGTTTGTGCCCAAGGAAAACATGGATCCCACAAACTAAAAAACCACCAAAATTTCATGCATCGTTAACTCTTATGATCCCCATGACTTCACAACTCCCTAGACATCATAACTTCACTCTTGGCCTCAAACCCCCTTAGTGTTTTGTGTGTTTTTGATAATTGCTTTTCCATAATTATTTTTTAGTTTTATACTGCTATATATCCGCTCCGTGATACTTCTTATGTAAATTTTATTTGATAGAATCTTCTTTCTGCAATTAAATAATTCGGTTGAGTGAAGTTTTTTTTTCTCTTTGGGGGGGGGGGGGGGGGGGTTTAATTCTCAGTTTAGAGGCTCTATGAAGTTGCTTGCTCTTCCTAATTTTCTTTCTGTTACATGACCAGGGATTTGTTGTTGTGGAGACAAATTTCAGGATGTATGCTTATTCTTCTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCAAGGTATATGCCATCATTTAGTGTTATATAACCTTTGTTCAAGTTAATTTTAAGACATGCTTTTGTAAGAAAAATTTATAGATTGCACCTACACAACATTTGTATCTTATAAGTCACTTTGACAATTTTATTTATTTATTTAGTTATTTTTGAGAAACAACAACTTTCATTAAGAAAAAAAGGAATATAGGGGCATACAAATAAAGCAATATTCTGTAGAATGAATTGGGACTCGGGAATTTTTTTTAAGATTGGGAGGGTCTAAGTACCTTGAATACTTGGTTTATCTTGCAATTCCATTATTTTTTATTTTTCGATATATTTGGGTTCAAATTGTTAAAGGTCCATCTTTTTAATTGCATTCTTACAGATGCACTTGTAGTAGTTGTTGAACAGGAAAAATGATTAAAGTTTAACATTCTACATTTTACCTACTGCTTGATGAATGCAGTTATTTCCTTTTCTGTTGAATTGAACCATGTGATGCAGCAATATAAACACACATATCAACTTTCTATTTGGTTCAAGAATTACAAAATAAAACGAAGCTGTCCTTCTGCAGGATTGAGTATCAACTTCCAAATCTTATAGTTGGAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGGATTACAGCTGAGCAGGCAAGTTTTCTGCTTGTTCACCCTGGCTCATGTTACTCTTAGTCTTGTGAAGGGTACCACTATATTATGTTCAAATTGCCAATGGAATGCAGTAGACCAGTTCTTCTTCATGCAACATTTTGCGTTGGTAGCACTGTTAATTCTTGCCAGTGGTGGAATGCTTGGAGAATTCTCCCCAATTCTAAATATTATTCCTAGCATGAAAAATATTGGGGCTTGGCCCAAGGGAGTTATTTCTAGTTAGCAGGGATCAAGTGCCAAACCCATTGTTACCGGCCATTAACAATGGAACTTCAACTAGCATTGGCTCCTGATCTACAAGAAACGATATTTCTATTTTCCTTCTGTGCATCAGTCTAAACTTTATTTAACTGTTCCGTGGATGTTAAAGTTGCTAACAGTGTGTTGATAGAGTGAGCAGCAATATTAATTAGACATTATTTTTATTTTTAAGGTAGCGTATTGTCTGTCTATTCTCCTTCTTCTTTGTCACCTTCGACAACCTTTCCATCCATCACCACCACCTTCCACCGGCACCATTGTCCTCTTGGTCAAAAGGGTTCTAAAGTCGTTGGAATGCCATCAAAACATGTAAAGGAGAAGCTGGGGGGGGGGGGGCAAAACCCAATACTAAATTTAGGTGGCGGATAAGTATTCTACAAATTCTTCCGACTGAAAATTCTCTGTAGGGTCACGAGGGAGAAGGATGGCGACAATGCTCGCCAAAAGGTGAAGAAGGAGAAGAGATGAGAGATAATAGGCCACCTCATGAATTAATATTAAATTAATATAATTGACTACTCATCGAATACGCAGATACTTAATTACATTGGATACATTACTGGAGTTTTCTATGCTGGTTTTCTCATTTCAAATTGCTTGACATCTGACTATTGGTTTACAGATAGTTACTTTTCTACAACAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTACCTGAAAATGTCACAGATCAGGTTGGGGTTGCTTTAGTAAATTCTTTGATATTCGTCAAACCAATGGTTTCACCTATCATGGAAACCAAAAATGTTTACATGTTTTCTCATCTTACAGTTTTATCAAATCTTTTCCATTTGCTCTTTTTTCCATGCCAGATTAGGTTATGGGAATCAGATCTTAATAGGGTTGATATTACTCCCGCACATTTTTACGATGAATTTCCTTCCAGGGTACGGATTTCAAATGTTGCTTCTTTTAACTTTGAAGATTACTTGTACATTCACCTGAAAAAACCACTTGAGAAGGAATTTCTTTGGCATTCCAGGAAGTTTTCGAGGCTGCTTGCGATTATGCACGAGAGTGGAATGGGTTGCTATGGGAGGATTCAAAAAACTTGCGACTGGTAGTGAAGGCAGACATACACACACATATGCGAGAACATCTTCGGCGTCAAAAGTAGATTGCGAAGAGATGATACAACACCGCTGCCAAGAAATGTTTATAACCACTCTGGCACTTCCGTTTTTGTTGCTTAGTGGCATGAACTAAAAGATTTACTTCGTTAAGGACGGTGAAGAGAACGGAGTGAAAGTTTTTGGTGGGATTGGGAGGAAGGAATATTGTGCCGATGACAATGGTTTTTGTTACTATGTACATTTTGAAGTCGGTTCCCCTTCGTGGACTATATGATACGCAAGTTTTGTTAGGTTGATTTCCCTCTGACAATCAACTTTTGGGTATAGTTGGATACAAATGTGTTACTAATCAAGAGATTTGTGGTCAAAATTCTTTAATCTTATTGTATCACTACTTGGATTAAAAAATAAAAAAAGAAAAAAAATTATGGATACAGCTTCATTCTGGCACTTACATCTGGGACTTTAAAAAACACATGGTCAGGTGCTTCAAAAAATAATGAAATATGTGTGTAATGTCATTTTGGAGGGGAACTTTTAATGGAAAGTTTATCGTTGTATAAAACTATTTGAACTATAGAATAAGTAATT

mRNA sequence

CTTCTTTTTCTCCCATCTTTTCTTTCATTTGTTGTGAGTTTGAGTTAGGTTAAACTTTATGTATATCTCCAAATTAATTTAAATATAATTTATAGTAATATACAAATTAATTTTGTACTTTTTTTACAACAATTTGATACTTTAGTTTTAAGTTATTAGCAAGTATTTTAGTTATTATTACTTTTTAAATCTAGCAACATGTCGAGTTTCAAGTTGCATATCTGTCCAAGTCGCCGCTGCCGTCCGATCACCTTTCAGCGGGTGTTGACGCGCGAGGTTCCAAATTTTATACTTAGGGTTTCCATTTTTACAAAGCGGTAATTGGACAATTCATATATCCATCTGTCTAAAAAAAAGAAGTTTAAATTGAAAGCTCATCTAACATGGCAATTTCCCGACCCAATAGCTTTTTTTATAATCAAGAAGAATTGGACATTCAACTACGTGTCATTCTTCGTCTTCGGTCTTCCGAATGAGCAAGCAGAGTGTCAATCTACTAAGGTTAACTTTGAATTAGTTGATAATTGATTGATTTCAGAGGATCCCAAGACTTCACCATTTGCTATAAATCTCACTCTCGACCTGGAAGCTGCAATTTTTTTTTTTAATTCGTGATTCTGTGCCTAAAGGACTAGCAAAGCTAATCCAAAATGCCTCAAGTAAAGATCATAGCGAAGAATTTTATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGATCAACTCTATGAGAATGCATTCATCTGCGAAGCCATTCTCAGGTCACTTCCGCCACTGGCTAAGAAGTTTGTTTTACAAATGTTATACATTGATGCTCCAGTTTCAGCCAAGTCCATGGAGGAGTGGGTGCTCCCAGATGGAGTCTCAAAGTATAAGGTTGCTGTTGATCGATTGATTCAATTGAGAGTATTCATTGAGACTGCAGATAGGAAAAGAGAAACAACCTACCGGCTAAATCCAACTTTCCAAGCAAACCTCCAAAAGCTTTTAATACATGGTGAAGTTCTAGCCAGAGAACCGATGCCTTCTAATATAACCGTGAGGCTTCCAAGTTTGGAAGATCTTGAGGCTTATGCTCTGGATCAGTGGGAGTGCTTCTTGCTGCAATTGATAAACTCGGGCCAAGCAGAGAAGCCATCAAATATTAGTTCTTCTGTGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAGAGGGATAAAGAAGCTCCACGATTAACTGAGAGTGGTTTCCAGTTCTTGTTGATGGAAACAAATGCACAACTTTGGTATATCATCCGAGAATATATATCTAACGCTGAGGAGCGAGGTGTGGATCCTGCAGATTTGATTTCTTTTCTGCTAGAGCTTAGTTTTCACGTCACAGGAGAGGCTTATGATATTGATACACTGTCAGATGAACAGAGGTATGCTATCAAGGACCTTGCTGATCTGGGACTAGTTAAGCTTCAGCAGGGTAGAAAAGAGAGTTGGTTCATACCTACTAAATTAGCTACAAATCTTTCAATGAGTTTGGCAGATTCCTCTTCAAGGAAACAAGGATTTGTTGTTGTGGAGACAAATTTCAGGATGTATGCTTATTCTTCTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCAAGGATTGAGTATCAACTTCCAAATCTTATAGTTGGAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGGATTACAGCTGAGCAGGCAAGTTTTCTGCTTATAGTTACTTTTCTACAACAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTACCTGAAAATGTCACAGATCAGATTAGGTTATGGGAATCAGATCTTAATAGGGTTGATATTACTCCCGCACATTTTTACGATGAATTTCCTTCCAGGGAAGTTTTCGAGGCTGCTTGCGATTATGCACGAGAGTGGAATGGGTTGCTATGGGAGGATTCAAAAAACTTGCGACTGGTAGTGAAGGCAGACATACACACACATATGCGAGAACATCTTCGGCGTCAAAAGTAGATTGCGAAGAGATGATACAACACCGCTGCCAAGAAATGTTTATAACCACTCTGGCACTTCCGTTTTTGTTGCTTAGTGGCATGAACTAAAAGATTTACTTCGTTAAGGACGGTGAAGAGAACGGAGTGAAAGTTTTTGGTGGGATTGGGAGGAAGGAATATTGTGCCGATGACAATGGTTTTTGTTACTATGTACATTTTGAAGTCGGTTCCCCTTCGTGGACTATATGATACGCAAGTTTTGTTAGGTTGATTTCCCTCTGACAATCAACTTTTGGGTATAGTTGGATACAAATGTGTTACTAATCAAGAGATTTGTGGTCAAAATTCTTTAATCTTATTGTATCACTACTTGGATTAAAAAATAAAAAAAGAAAAAAAATTATGGATACAGCTTCATTCTGGCACTTACATCTGGGACTTTAAAAAACACATGGTCAGGTGCTTCAAAAAATAATGAAATATGTGTGTAATGTCATTTTGGAGGGGAACTTTTAATGGAAAGTTTATCGTTGTATAAAACTATTTGAACTATAGAATAAGTAATT

Coding sequence (CDS)

ATGCCTCAAGTAAAGATCATAGCGAAGAATTTTATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGATCAACTCTATGAGAATGCATTCATCTGCGAAGCCATTCTCAGGTCACTTCCGCCACTGGCTAAGAAGTTTGTTTTACAAATGTTATACATTGATGCTCCAGTTTCAGCCAAGTCCATGGAGGAGTGGGTGCTCCCAGATGGAGTCTCAAAGTATAAGGTTGCTGTTGATCGATTGATTCAATTGAGAGTATTCATTGAGACTGCAGATAGGAAAAGAGAAACAACCTACCGGCTAAATCCAACTTTCCAAGCAAACCTCCAAAAGCTTTTAATACATGGTGAAGTTCTAGCCAGAGAACCGATGCCTTCTAATATAACCGTGAGGCTTCCAAGTTTGGAAGATCTTGAGGCTTATGCTCTGGATCAGTGGGAGTGCTTCTTGCTGCAATTGATAAACTCGGGCCAAGCAGAGAAGCCATCAAATATTAGTTCTTCTGTGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAGAGGGATAAAGAAGCTCCACGATTAACTGAGAGTGGTTTCCAGTTCTTGTTGATGGAAACAAATGCACAACTTTGGTATATCATCCGAGAATATATATCTAACGCTGAGGAGCGAGGTGTGGATCCTGCAGATTTGATTTCTTTTCTGCTAGAGCTTAGTTTTCACGTCACAGGAGAGGCTTATGATATTGATACACTGTCAGATGAACAGAGGTATGCTATCAAGGACCTTGCTGATCTGGGACTAGTTAAGCTTCAGCAGGGTAGAAAAGAGAGTTGGTTCATACCTACTAAATTAGCTACAAATCTTTCAATGAGTTTGGCAGATTCCTCTTCAAGGAAACAAGGATTTGTTGTTGTGGAGACAAATTTCAGGATGTATGCTTATTCTTCTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCAAGGATTGAGTATCAACTTCCAAATCTTATAGTTGGAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGGATTACAGCTGAGCAGGCAAGTTTTCTGCTTATAGTTACTTTTCTACAACAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTACCTGAAAATGTCACAGATCAGATTAGGTTATGGGAATCAGATCTTAATAGGGTTGATATTACTCCCGCACATTTTTACGATGAATTTCCTTCCAGGGAAGTTTTCGAGGCTGCTTGCGATTATGCACGAGAGTGGAATGGGTTGCTATGGGAGGATTCAAAAAACTTGCGACTGGTAGTGAAGGCAGACATACACACACATATGCGAGAACATCTTCGGCGTCAAAAGTAG

Protein sequence

MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSAKSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVLAREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLSQRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK

Homology

[Close]

BLAST of Cmc08g0210011 vs. NCBI nr
Match: XP_004134713.1 (general transcription and DNA repair factor IIH subunit TFB2 isoform X1 [Cucumis sativus] >KGN49219.1 hypothetical protein Csa_003950 [Cucumis sativus])

HSP 1 Score: 882.5 bits (2279), Expect = 1.6e-252
Identity = 448/456 (98.25%), Postives = 449/456 (98.46%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYID PVSA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRK GFVV
Sbjct: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLL 360
           VETNFRMYAYS+SKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQ     
Sbjct: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQ----- 360

Query: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420
           IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD
Sbjct: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420

Query: 421 YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 457
           YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK
Sbjct: 421 YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of Cmc08g0210011 vs. NCBI nr
Match: XP_038882460.1 (general transcription and DNA repair factor IIH subunit TFB2 isoform X1 [Benincasa hispida])

HSP 1 Score: 874.0 bits (2257), Expect = 5.6e-250
Identity = 442/456 (96.93%), Postives = 448/456 (98.25%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60
           MPQVKIIAKNFMDMVASLP MKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA
Sbjct: 1   MPQVKIIAKNFMDMVASLPPMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNP FQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPMFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMP+NITVRLPSLE+L+AYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPANITVRLPSLEELKAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTL+DEQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTDEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLL 360
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQ     
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQ----- 360

Query: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420
           IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD
Sbjct: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420

Query: 421 YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 457
           YAREWNGLLWED KN+RLVVKADIHTHMREHLRRQK
Sbjct: 421 YAREWNGLLWEDLKNMRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of Cmc08g0210011 vs. NCBI nr
Match: XP_022977542.1 (RNA polymerase II transcription factor B subunit 2 [Cucurbita maxima])

HSP 1 Score: 872.8 bits (2254), Expect = 1.3e-249
Identity = 440/456 (96.49%), Postives = 449/456 (98.46%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLL 360
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+Q     
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ----- 360

Query: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420
           IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD
Sbjct: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420

Query: 421 YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 457
           YAREWNGLLWEDSK LRLVVKADIHTHMREHLRRQK
Sbjct: 421 YAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of Cmc08g0210011 vs. NCBI nr
Match: XP_023543805.1 (RNA polymerase II transcription factor B subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 870.2 bits (2247), Expect = 8.1e-249
Identity = 439/456 (96.27%), Postives = 448/456 (98.25%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISNAEER VDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLL 360
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+Q     
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ----- 360

Query: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420
           IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD
Sbjct: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420

Query: 421 YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 457
           YAREWNGLLWEDSK LRLVVKADIHTHMREHLRRQK
Sbjct: 421 YAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of Cmc08g0210011 vs. NCBI nr
Match: KAG6604444.1 (General transcription and DNA repair factor IIH subunit TFB2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 870.2 bits (2247), Expect = 8.1e-249
Identity = 439/456 (96.27%), Postives = 448/456 (98.25%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPV+A
Sbjct: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISNAEER VDPADLISFLLELSFHVTGE
Sbjct: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 272 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 331

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLL 360
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+Q     
Sbjct: 332 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ----- 391

Query: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420
           IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD
Sbjct: 392 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 451

Query: 421 YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 457
           YAREWNGLLWEDSK LRLVVKADIHTHMREHLRRQK
Sbjct: 452 YAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 482

[Close]

BLAST of Cmc08g0210011 vs. ExPASy Swiss-Prot
Match: Q680U9 (General transcription and DNA repair factor IIH subunit TFB2 OS=Arabidopsis thaliana OX=3702 GN=TFB2 PE=2 SV=1)

HSP 1 Score: 716.8 bits (1849), Expect = 1.5e-205
Identity = 351/455 (77.14%), Postives = 404/455 (88.79%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
            REPM S+  ++LPSL++LE YAL QWECFLLQLINSGQ EK + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEER VDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AY+++TL++ Q   +KDLADLGLVKLQQGRK+SWFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLL 360
           +ETNFRMYAYS+SKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT++Q     
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQ----- 360

Query: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420
           I+TFLQQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS++VFEAACD
Sbjct: 361 IITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACD 420

Query: 421 YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQ 456
           +AREW GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 FAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

[Close]

BLAST of Cmc08g0210011 vs. ExPASy Swiss-Prot
Match: Q92759 (General transcription factor IIH subunit 4 OS=Homo sapiens OX=9606 GN=GTF2H4 PE=1 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 3.9e-68
Identity = 155/458 (33.84%), Postives = 257/458 (56.11%), Query Frame = 0


Query: 3   QVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSAKS 62
           +V +  +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ P+   +
Sbjct: 11  RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 70

Query: 63  MEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQ-KLLIHGEVLA 122
           +  WV  +     + +   L  LR++             LNP F+ NL+  LL  G+  +
Sbjct: 71  VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130

Query: 123 REPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLL-S 182
            +            +  L+ YA ++WE  L  ++ S  A    +++  +    Q GL+ S
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 190

Query: 183 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 242
               E P +T +GFQFLL++T AQLWY + +Y+  A+ RG+D  +++SFL +LSF   G+
Sbjct: 191 TEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 250

Query: 243 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLS--MSLADSSSRKQGF 302
            Y ++ +SD     ++ L + GLV  Q+ RK   + PT+LA NLS  +S A  +  + GF
Sbjct: 251 DYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGF 310

Query: 303 VVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASF 362
           +VVETN+R+YAY+ S+L   ++ LFS + Y+ PN++V  +T+ES+  A  +GITA+Q   
Sbjct: 311 IVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQ--- 370

Query: 363 LLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAA 422
             I+ FL+  AHP + ++ P +P  +TDQIRLWE + +R+  T    Y++F S+  FE  
Sbjct: 371 --IIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELL 430

Query: 423 CDYAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 457
             +ARE   L++E+S    +VV    H+ ++   +RQK
Sbjct: 431 LAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459

[Close]

BLAST of Cmc08g0210011 vs. ExPASy Swiss-Prot
Match: P60027 (General transcription factor IIH subunit 4 OS=Pan troglodytes OX=9598 GN=GTF2H4 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 3.9e-68
Identity = 155/458 (33.84%), Postives = 257/458 (56.11%), Query Frame = 0


Query: 3   QVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSAKS 62
           +V +  +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ P+   +
Sbjct: 11  RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 70

Query: 63  MEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQ-KLLIHGEVLA 122
           +  WV  +     + +   L  LR++             LNP F+ NL+  LL  G+  +
Sbjct: 71  VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130

Query: 123 REPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLL-S 182
            +            +  L+ YA ++WE  L  ++ S  A    +++  +    Q GL+ S
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 190

Query: 183 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 242
               E P +T +GFQFLL++T AQLWY + +Y+  A+ RG+D  +++SFL +LSF   G+
Sbjct: 191 TEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 250

Query: 243 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLS--MSLADSSSRKQGF 302
            Y ++ +SD     ++ L + GLV  Q+ RK   + PT+LA NLS  +S A  +  + GF
Sbjct: 251 DYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGF 310

Query: 303 VVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASF 362
           +VVETN+R+YAY+ S+L   ++ LFS + Y+ PN++V  +T+ES+  A  +GITA+Q   
Sbjct: 311 IVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQ--- 370

Query: 363 LLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAA 422
             I+ FL+  AHP + ++ P +P  +TDQIRLWE + +R+  T    Y++F S+  FE  
Sbjct: 371 --IIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELL 430

Query: 423 CDYAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 457
             +ARE   L++E+S    +VV    H+ ++   +RQK
Sbjct: 431 LAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459

[Close]

BLAST of Cmc08g0210011 vs. ExPASy Swiss-Prot
Match: O70422 (General transcription factor IIH subunit 4 OS=Mus musculus OX=10090 GN=Gtf2h4 PE=1 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 8.6e-68
Identity = 154/452 (34.07%), Postives = 254/452 (56.19%), Query Frame = 0


Query: 9   KNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSAKSMEEWVL 68
           +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ P+   ++  WV 
Sbjct: 18  RNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWVK 77

Query: 69  PDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQ-KLLIHGEVLAREPMPS 128
            +     + +   L  LR++             LNP F+ NL+  LL  G+  + +    
Sbjct: 78  KEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQL 137

Query: 129 NITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLL-SQRDKEA 188
                   +  L+ YA ++WE  L  ++ S  A    +++  +    Q GL+ S    E 
Sbjct: 138 GPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKSTEPGEP 197

Query: 189 PRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGEAYDIDT 248
           P +T +GFQFLL++T AQLWY + +Y+  A+ RG+D  +++SFL +LSF   G+ Y ++ 
Sbjct: 198 PCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEG 257

Query: 249 LSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLS--MSLADSSSRKQGFVVVETN 308
           +SD     ++ L + GLV  Q+ RK   + PT+LA NLS  +S A  +  + GF+VVETN
Sbjct: 258 MSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETN 317

Query: 309 FRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLLIVTF 368
           +R+YAY+ S+L   ++ LFS + Y+ PN++V  +T+ES+  A  +GITA+Q     I+ F
Sbjct: 318 YRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQ-----IIHF 377

Query: 369 LQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYARE 428
           L+  AHP + ++ P +P  +TDQIRLWE + +R+  T    Y++F S+  FE    +ARE
Sbjct: 378 LRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARE 437

Query: 429 WNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 457
              L++E+S    +VV    H+ ++   +RQK
Sbjct: 438 LGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460

[Close]

BLAST of Cmc08g0210011 vs. ExPASy Swiss-Prot
Match: Q6CLR2 (General transcription and DNA repair factor IIH subunit TFB2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=TFB2 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.4e-63
Identity = 150/491 (30.55%), Postives = 252/491 (51.32%), Query Frame = 0


Query: 13  DMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSAKSMEEWVLPDGV 72
           D +  LP     +LYE+   C AI R L P+AK F++ ML+ D  VS + +++WV PD  
Sbjct: 12  DYLEGLPEQVQSRLYESPATCLAIYRLLSPMAKFFIMSMLFQDHDVSLRDLDKWVKPDAK 71

Query: 73  SKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVLAREPMPSNITVR 132
            + + ++  +  L + IE  + K+    RLNP F+ + + +L  GE+       ++    
Sbjct: 72  YQLQYSIKSMKSLNLIIE-GESKQPLLIRLNPIFKKSFKNVLTGGEINNSFGDVADDDTN 131

Query: 133 LPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQ-KGLLSQRDKEAPRLTE 192
             S   L+ Y+ ++WE  L  ++ +     P      V+ + Q  GL+ + +    ++T 
Sbjct: 132 PVSTATLDQYSAEKWETILHYMVGTPNTNTP---GGKVLDLLQHSGLMEEAEYGELKITN 191

Query: 193 SGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQ 252
            GFQFLL + NAQ+W ++ +Y+  AE   +DP D+++F+  L     G+AY  D LS+ Q
Sbjct: 192 QGFQFLLQDVNAQMWTLLLQYLKMAESLQMDPVDVLNFIFMLGALQLGKAYKCDQLSNTQ 251

Query: 253 RYAIKDLADLGLVKLQQGRKESWFIPTKLATNL--------SMSLA-------------- 312
           R  ++D+ D GL+  Q     + F PT+LAT L        S S+A              
Sbjct: 252 RTMLQDMRDYGLI-YQNQSDYAKFYPTRLATLLTSDTKAFRSASVALDSVLNKANETTAV 311

Query: 313 -------DSSSRKQ-GFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKE 372
                  +++ R Q G +++ETNF++Y+YS+S L   IL LF  ++ +  N++ G +T+E
Sbjct: 312 EGDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRE 371

Query: 373 SLYNAFKNGITAEQASFLLIVTFLQQNAHPR------------------VAERIPSVPEN 432
           S+ NA  NGITAEQ     I+ +L+ +AHPR                  V E +  +P  
Sbjct: 372 SVRNALLNGITAEQ-----IIAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPT 431

Query: 433 VTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRLVVKAD 455
           V DQIRLW+ +L+R+     + Y +F S + ++   DYA++   LLW++ K     V  +
Sbjct: 432 VVDQIRLWQLELDRIISYDGYLYTDFESYQEYQTVADYAKDIGVLLWQNEKKKMFFVSTE 491

[Close]

BLAST of Cmc08g0210011 vs. ExPASy TrEMBL
Match: A0A0A0KK55 (RNA polymerase II transcription factor B subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_6G517270 PE=3 SV=1)

HSP 1 Score: 882.5 bits (2279), Expect = 7.6e-253
Identity = 448/456 (98.25%), Postives = 449/456 (98.46%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYID PVSA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRK GFVV
Sbjct: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLL 360
           VETNFRMYAYS+SKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQ     
Sbjct: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQ----- 360

Query: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420
           IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD
Sbjct: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420

Query: 421 YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 457
           YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK
Sbjct: 421 YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of Cmc08g0210011 vs. ExPASy TrEMBL
Match: A0A6J1IIT5 (RNA polymerase II transcription factor B subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111477843 PE=3 SV=1)

HSP 1 Score: 872.8 bits (2254), Expect = 6.1e-250
Identity = 440/456 (96.49%), Postives = 449/456 (98.46%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLL 360
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+Q     
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ----- 360

Query: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420
           IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD
Sbjct: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420

Query: 421 YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 457
           YAREWNGLLWEDSK LRLVVKADIHTHMREHLRRQK
Sbjct: 421 YAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of Cmc08g0210011 vs. ExPASy TrEMBL
Match: A0A6J1EGA7 (RNA polymerase II transcription factor B subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111433104 PE=3 SV=1)

HSP 1 Score: 864.4 bits (2232), Expect = 2.2e-247
Identity = 437/456 (95.83%), Postives = 446/456 (97.81%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLY NAFICEAILRSLPPLAKKFVLQMLYIDAPV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYGNAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLI GEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIQGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISNAEER VDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLL 360
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+Q     
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQ----- 360

Query: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420
           IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD
Sbjct: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420

Query: 421 YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 457
           YAREWNGLLWEDSK LRLVVKADIHTHMREHLRRQK
Sbjct: 421 YAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of Cmc08g0210011 vs. ExPASy TrEMBL
Match: A0A6J1CK16 (RNA polymerase II transcription factor B subunit 2 OS=Momordica charantia OX=3673 GN=LOC111012326 PE=3 SV=1)

HSP 1 Score: 849.7 bits (2194), Expect = 5.5e-243
Identity = 438/496 (88.31%), Postives = 449/496 (90.52%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLD LYENAFICEAILRSLPPLAKKFVLQMLYI+APV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDNLYENAFICEAILRSLPPLAKKFVLQMLYIEAPVAA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVL DGVSKYKVA+DRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLI+GEVL
Sbjct: 61  KSMEEWVLSDGVSKYKVALDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIYGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISN+EERGVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFLLELSFHVTGE 240

Query: 241 ----------------------------------------AYDIDTLSDEQRYAIKDLAD 300
                                                   AYDIDTL++EQRYAIKDLAD
Sbjct: 241 LQWLFGDADLLLRFVCLFRGALFFIVLSGFLYFWEFISFLAYDIDTLTEEQRYAIKDLAD 300

Query: 301 LGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEIL 360
           LGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSS+LHCEIL
Sbjct: 301 LGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSRLHCEIL 360

Query: 361 RLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLLIVTFLQQNAHPRVAERIPSV 420
           RLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQ     IVTFLQQNAHPRVAERIPSV
Sbjct: 361 RLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQ-----IVTFLQQNAHPRVAERIPSV 420

Query: 421 PENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRLVV 457
           PENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKN+RLVV
Sbjct: 421 PENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNMRLVV 480

[Close]

BLAST of Cmc08g0210011 vs. ExPASy TrEMBL
Match: A0A5A7UBE2 (RNA polymerase II transcription factor B subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003070 PE=3 SV=1)

HSP 1 Score: 838.6 bits (2165), Expect = 1.3e-239
Identity = 433/463 (93.52%), Postives = 433/463 (93.52%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
           AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 181 Q-------------------------RDKEAPRLTESGFQFLLMETNAQLWYIIREYISN 240
           Q                         RDKEAPRLTESGFQFLLMETNAQLWYIIREYISN
Sbjct: 181 QRLKSCSMYSSLYFARYLIKCYVWYSRDKEAPRLTESGFQFLLMETNAQLWYIIREYISN 240

Query: 241 AEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWF 300
           AEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWF
Sbjct: 241 AEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWF 300

Query: 301 IPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIV 360
           IPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIV
Sbjct: 301 IPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIV 360

Query: 361 GAITKESLYNAFKNGITAEQASFLLIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDL 420
           GAITKESLYNAFKNGITAEQ     IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDL
Sbjct: 361 GAITKESLYNAFKNGITAEQ-----IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDL 420

Query: 421 NRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRL 439
           NRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRL
Sbjct: 421 NRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRL 458

[Close]

BLAST of Cmc08g0210011 vs. TAIR 10
Match: AT4G17020.2 (transcription factor-related )

HSP 1 Score: 716.8 bits (1849), Expect = 1.1e-206
Identity = 351/455 (77.14%), Postives = 404/455 (88.79%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
            REPM S+  ++LPSL++LE YAL QWECFLLQLINSGQ EK + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEER VDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AY+++TL++ Q   +KDLADLGLVKLQQGRK+SWFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLL 360
           +ETNFRMYAYS+SKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT++Q     
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQ----- 360

Query: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420
           I+TFLQQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS++VFEAACD
Sbjct: 361 IITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACD 420

Query: 421 YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQ 456
           +AREW GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 FAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

[Close]

BLAST of Cmc08g0210011 vs. TAIR 10
Match: AT4G17020.1 (transcription factor-related )

HSP 1 Score: 716.8 bits (1849), Expect = 1.1e-206
Identity = 351/455 (77.14%), Postives = 404/455 (88.79%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
            REPM S+  ++LPSL++LE YAL QWECFLLQLINSGQ EK + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEER VDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AY+++TL++ Q   +KDLADLGLVKLQQGRK+SWFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLL 360
           +ETNFRMYAYS+SKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT++Q     
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQ----- 360

Query: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420
           I+TFLQQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS++VFEAACD
Sbjct: 361 IITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACD 420

Query: 421 YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQ 456
           +AREW GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 FAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

[Close]

BLAST of Cmc08g0210011 vs. TAIR 10
Match: AT4G17020.3 (transcription factor-related )

HSP 1 Score: 716.8 bits (1849), Expect = 1.1e-206
Identity = 351/455 (77.14%), Postives = 404/455 (88.79%), Query Frame = 0


Query: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
            REPM S+  ++LPSL++LE YAL QWECFLLQLINSGQ EK + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEER VDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV 300
           AY+++TL++ Q   +KDLADLGLVKLQQGRK+SWFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQASFLL 360
           +ETNFRMYAYS+SKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT++Q     
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQ----- 360

Query: 361 IVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACD 420
           I+TFLQQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS++VFEAACD
Sbjct: 361 IITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACD 420

Query: 421 YAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQ 456
           +AREW GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 FAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

The following BLAST results are available for this feature:

BLAST of Cmc08g0210011 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134713.1	1.6e-252	98.25	general transcription and DNA repair factor IIH subunit TFB2 isoform X1 [Cucumis...	[more]
XP_038882460.1	5.6e-250	96.93	general transcription and DNA repair factor IIH subunit TFB2 isoform X1 [Beninca...	[more]
XP_022977542.1	1.3e-249	96.49	RNA polymerase II transcription factor B subunit 2 [Cucurbita maxima]	[more]
XP_023543805.1	8.1e-249	96.27	RNA polymerase II transcription factor B subunit 2 [Cucurbita pepo subsp. pepo]	[more]
KAG6604444.1	8.1e-249	96.27	General transcription and DNA repair factor IIH subunit TFB2, partial [Cucurbita...	[more]

BLAST of Cmc08g0210011 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q680U9	1.5e-205	77.14	General transcription and DNA repair factor IIH subunit TFB2 OS=Arabidopsis thal...	[more]
Q92759	3.9e-68	33.84	General transcription factor IIH subunit 4 OS=Homo sapiens OX=9606 GN=GTF2H4 PE=...	[more]
P60027	3.9e-68	33.84	General transcription factor IIH subunit 4 OS=Pan troglodytes OX=9598 GN=GTF2H4 ...	[more]
O70422	8.6e-68	34.07	General transcription factor IIH subunit 4 OS=Mus musculus OX=10090 GN=Gtf2h4 PE...	[more]
Q6CLR2	6.4e-63	30.55	General transcription and DNA repair factor IIH subunit TFB2 OS=Kluyveromyces la...	[more]

BLAST of Cmc08g0210011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK55	7.6e-253	98.25	RNA polymerase II transcription factor B subunit 2 OS=Cucumis sativus OX=3659 GN...	[more]
A0A6J1IIT5	6.1e-250	96.49	RNA polymerase II transcription factor B subunit 2 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1EGA7	2.2e-247	95.83	RNA polymerase II transcription factor B subunit 2 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1CK16	5.5e-243	88.31	RNA polymerase II transcription factor B subunit 2 OS=Momordica charantia OX=367...	[more]
A0A5A7UBE2	1.3e-239	93.52	RNA polymerase II transcription factor B subunit 2 OS=Cucumis melo var. makuwa O...	[more]

BLAST of Cmc08g0210011 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17020.2	1.1e-206	77.14	transcription factor-related	[more]
AT4G17020.1	1.1e-206	77.14	transcription factor-related	[more]
AT4G17020.3	1.1e-206	77.14	transcription factor-related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004598	Transcription factor TFIIH subunit p52/Tfb2	PFAM	PF03849	Tfb2	coord: 14..371 e-value: 1.4E-107 score: 359.8
IPR004598	Transcription factor TFIIH subunit p52/Tfb2	TIGRFAM	TIGR00625	TIGR00625	coord: 13..456 e-value: 9.8E-103 score: 342.5
IPR004598	Transcription factor TFIIH subunit p52/Tfb2	PANTHER	PTHR13152	TFIIH, POLYPEPTIDE 4	coord: 5..454
None	No IPR available	GENE3D	3.30.70.2610		coord: 382..456 e-value: 1.2E-26 score: 94.8
IPR040662	Transcription factor Tfb2, C-terminal domain	PFAM	PF18307	Tfb2_C	coord: 386..453 e-value: 1.7E-22 score: 79.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0210011.1	Cmc08g0210011.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0070816	phosphorylation of RNA polymerase II C-terminal domain
cellular_component	GO:0016020	membrane
cellular_component	GO:0000439	transcription factor TFIIH core complex
cellular_component	GO:0005675	transcription factor TFIIH holo complex
molecular_function	GO:0001671	ATPase activator activity
molecular_function	GO:0003690	double-stranded DNA binding