Cmc08g0209711 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0209711
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Trigger factor like
Location	CMiso1.1chr08: 1832949 .. 1833840 (+)
RNA-Seq Expression	Cmc08g0209711
Synteny	Cmc08g0209711

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGTGAAGTTTTAGTAGGAGAAAACCCACCATGGAATTTTTCTTTGGCTCTAAATTGGTTTGTTACAGCTTAAAATGAAACTATACTTAGGAAAAGAAAACTGAAGTTAGAGAAATAAATGGAATAAAAAGTAAAAAAATAGAAAAGAAAGAGAAAAGGGTGCTGATTTCCACGTAAGAAGTAACGTAAAGGAACGGAAGCAATCAGCACTGTGGATAAGAACGTGGAGTGTGACGTCACCAACTTCTGCAACATCCGATTAATCCTTTTTCACTCTCTTTCTTTATGTCTTTAACCCTAAACTCCAAATTCCAAATTCCAAATCCTACCCCTAAAATAAACCACTTTGTTTATTGATCTTCTTCTTCCCATTTCCAATGACGTTGGAGCTTTTCGTCTTGTGCTGCACTGCCGTTGTGGTCTTCCTCCATGGAGCTAATTTCTTCTTCCACGCTCTCTTCCACCATTTCACCGTCCTCCGATCTCTCAGGTATCCCCCACCCCTTTCCATTTCTTCTGCCATTGATTTAGGGCATTCCCCTCTTTCTAAATTCCTTCTCATGCGATGATCCTGTTGAACCTAATTACTACAATTTTGATGTGTAAATTTTAACAACTTTTTTTTTTTTCGTGATTTCAGTTTCTTGGGTGCGATTGGAATGTGGTAGGAATTGGAGAAGGGGAGTGGTGGATCGTTTAATCGGAGATTGAACGCCAGATTGGACTCTGTATATATCCGACATTCTGATTTTTAATTTGTTATCTAGATTTACTCTTTGATCATAATTTAATTCCCATGAATAAATTAATTAATTAATTAAATCTATTGATTATCATTAGTATTGTATCACAAAATAGTCTCGTTTTCCTTTTATGGACTGTAGTTATTGC

mRNA sequence

TATGTGAAGTTTTAGTAGGAGAAAACCCACCATGGAATTTTTCTTTGGCTCTAAATTGGTTTGTTACAGCTTAAAATGAAACTATACTTAGGAAAAGAAAACTGAAGTTAGAGAAATAAATGGAATAAAAAGTAAAAAAATAGAAAAGAAAGAGAAAAGGGTGCTGATTTCCACGTAAGAAGTAACGTAAAGGAACGGAAGCAATCAGCACTGTGGATAAGAACGTGGAGTGTGACGTCACCAACTTCTGCAACATCCGATTAATCCTTTTTCACTCTCTTTCTTTATGTCTTTAACCCTAAACTCCAAATTCCAAATTCCAAATCCTACCCCTAAAATAAACCACTTTGTTTATTGATCTTCTTCTTCCCATTTCCAATGACGTTGGAGCTTTTCGTCTTGTGCTGCACTGCCGTTGTGGTCTTCCTCCATGGAGCTAATTTCTTCTTCCACGCTCTCTTCCACCATTTCACCGTCCTCCGATCTCTCAGTTTCTTGGGTGCGATTGGAATGTGGTAGGAATTGGAGAAGGGGAGTGGTGGATCGTTTAATCGGAGATTGAACGCCAGATTGGACTCTGTATATATCCGACATTCTGATTTTTAATTTGTTATCTAGATTTACTCTTTGATCATAATTTAATTCCCATGAATAAATTAATTAATTAATTAAATCTATTGATTATCATTAGTATTGTATCACAAAATAGTCTCGTTTTCCTTTTATGGACTGTAGTTATTGC

Coding sequence (CDS)

ATGACGTTGGAGCTTTTCGTCTTGTGCTGCACTGCCGTTGTGGTCTTCCTCCATGGAGCTAATTTCTTCTTCCACGCTCTCTTCCACCATTTCACCGTCCTCCGATCTCTCAGTTTCTTGGGTGCGATTGGAATGTGGTAG

Protein sequence

MTLELFVLCCTAVVVFLHGANFFFHALFHHFTVLRSLSFLGAIGMW

Homology

[Close]

BLAST of Cmc08g0209711 vs. NCBI nr
Match: XP_030460189.1 (uncharacterized protein LOC115680515 [Syzygium oleosum])

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 1   MTLELFVLCCTAVVVFLHGANFFFHALFHHFTVLRSLSFLGAIG 45
           M +ELFVL CT  VVFLHGANFFFH L HH  + RSLSFLG +G
Sbjct: 107 MMVELFVLGCTGFVVFLHGANFFFHVLSHHLAI-RSLSFLGFVG 149

[Close]

BLAST of Cmc08g0209711 vs. NCBI nr
Match: KAB2007446.1 (hypothetical protein ES319_D10G030800v1 [Gossypium barbadense] >KAG4124250.1 hypothetical protein ERO13_D10G028000v2 [Gossypium hirsutum] >TYG48642.1 hypothetical protein ES288_D10G031900v1 [Gossypium darwinii] >TYH47922.1 hypothetical protein ES332_D10G032500v1 [Gossypium tomentosum] >TYI59374.1 hypothetical protein E1A91_D10G032200v1 [Gossypium mustelinum])

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 1  MTLELFVLCCTAVVVFLHGANFFFHALFHHFTVLRSLSFLGAIG 45
          M +ELFVL CT VVVFLHGANFFFH L  H  V RSLSFLG +G
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAV-RSLSFLGFVG 43

[Close]

BLAST of Cmc08g0209711 vs. NCBI nr
Match: EOY28176.1 (Uncharacterized protein TCM_029816 [Theobroma cacao])

HSP 1 Score: 58.2 bits (139), Expect = 2.2e-05
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 1  MTLELFVLCCTAVVVFLHGANFFFHALFHHFTVLRSLSFLGAIG 45
          M +ELFVL CT VVVFLHGANFFFH L  H  V RSLSFLG +G
Sbjct: 1  MMVELFVLGCTGVVVFLHGANFFFHILSQHLAV-RSLSFLGFVG 43

[Close]

BLAST of Cmc08g0209711 vs. NCBI nr
Match: KAG8634527.1 (hypothetical protein MANES_17G048550v8 [Manihot esculenta])

HSP 1 Score: 57.8 bits (138), Expect = 2.9e-05
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 1  MTLELFVLCCTAVVVFLHGANFFFHALFHHFTVLRSLSFLGAIG 45
          M +ELFVL CT VV+FLHGANFFFHAL  H  V RSLSFLG  G
Sbjct: 1  MAVELFVLGCTGVVMFLHGANFFFHALSQHLAV-RSLSFLGFAG 43

[Close]

BLAST of Cmc08g0209711 vs. NCBI nr
Match: OAY26229.1 (hypothetical protein MANES_16G031000v8 [Manihot esculenta])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 1  MTLELFVLCCTAVVVFLHGANFFFHALFHHFTVLRSLSFLGAIG 45
          M +ELF+L CT VV+FLHGANFFFH L  H  + RSLSFLG +G
Sbjct: 1  MVVELFLLGCTGVVMFLHGANFFFHILTQHLAI-RSLSFLGFVG 43

[Close]

BLAST of Cmc08g0209711 vs. ExPASy TrEMBL
Match: A0A5D2AZA5 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A10G032000v1 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.3e-06
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 1  MTLELFVLCCTAVVVFLHGANFFFHALFHHFTVLRSLSFLGAIG 45
          M +ELFVL CT VVVFLHGANFFFH L  H  V RSLSFLG +G
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAV-RSLSFLGFVG 43

[Close]

BLAST of Cmc08g0209711 vs. ExPASy TrEMBL
Match: A0A5J5TXY1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G030200v1 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.3e-06
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 1  MTLELFVLCCTAVVVFLHGANFFFHALFHHFTVLRSLSFLGAIG 45
          M +ELFVL CT VVVFLHGANFFFH L  H  V RSLSFLG +G
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAV-RSLSFLGFVG 43

[Close]

BLAST of Cmc08g0209711 vs. ExPASy TrEMBL
Match: A0A5D2XGL5 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A10G030800v1 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.3e-06
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 1  MTLELFVLCCTAVVVFLHGANFFFHALFHHFTVLRSLSFLGAIG 45
          M +ELFVL CT VVVFLHGANFFFH L  H  V RSLSFLG +G
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAV-RSLSFLGFVG 43

[Close]

BLAST of Cmc08g0209711 vs. ExPASy TrEMBL
Match: A0A5D2J006 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D10G032500v1 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.3e-06
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 1  MTLELFVLCCTAVVVFLHGANFFFHALFHHFTVLRSLSFLGAIG 45
          M +ELFVL CT VVVFLHGANFFFH L  H  V RSLSFLG +G
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAV-RSLSFLGFVG 43

[Close]

BLAST of Cmc08g0209711 vs. ExPASy TrEMBL
Match: A0A061GF62 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029816 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 1  MTLELFVLCCTAVVVFLHGANFFFHALFHHFTVLRSLSFLGAIG 45
          M +ELFVL CT VVVFLHGANFFFH L  H  V RSLSFLG +G
Sbjct: 1  MMVELFVLGCTGVVVFLHGANFFFHILSQHLAV-RSLSFLGFVG 43

The following BLAST results are available for this feature:

BLAST of Cmc08g0209711 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030460189.1	1.0e-05	70.45	uncharacterized protein LOC115680515 [Syzygium oleosum]	[more]
KAB2007446.1	1.3e-05	72.73	hypothetical protein ES319_D10G030800v1 [Gossypium barbadense] >KAG4124250.1 hyp...	[more]
EOY28176.1	2.2e-05	72.73	Uncharacterized protein TCM_029816 [Theobroma cacao]	[more]
KAG8634527.1	2.9e-05	72.73	hypothetical protein MANES_17G048550v8 [Manihot esculenta]	[more]
OAY26229.1	1.1e-04	65.91	hypothetical protein MANES_16G031000v8 [Manihot esculenta]	[more]

BLAST of Cmc08g0209711 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc08g0209711 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2AZA5	6.3e-06	72.73	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A10G032000v1 PE=...	[more]
A0A5J5TXY1	6.3e-06	72.73	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G030200v1 PE...	[more]
A0A5D2XGL5	6.3e-06	72.73	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A10G030800v1 P...	[more]
A0A5D2J006	6.3e-06	72.73	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D10G032500v1 P...	[more]
A0A061GF62	1.1e-05	72.73	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029816 PE=4 SV=1	[more]

BLAST of Cmc08g0209711 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0209711.1	Cmc08g0209711.1	mRNA