Cmc08g0207481 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0207481
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionCl549_1b
LocationCMiso1.1chr08: 630711 .. 631306 (+)
RNA-Seq ExpressionCmc08g0207481
SyntenyCmc08g0207481
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCTGAGTAGAAGAACCCGAGTAGGCAGTCCGTTGAAGTTGACACTCTTCGCCTTCTTCTCTGATTTCGTATCATTAGCGTTCACAATTACTCCAGCACGCAAGTCTGTCTTTTTCGCCATCAGAGGAGTGGTAATCCCTTGTTCTTGCTTCCCAAGCCCTTGCCCCTCTTTCCACCCCATCTTAGCCATCATCCTTTGTGCCGCTGTCATCTGCCCGCCAGCACCAACCCCCAACCCCCCAGTCTCCGACTTTCCAATGCTGAAGCCATCTACGCTACTTGGTGGAGATGGCGATCTTGGTATTGCCCCACTCTTCGCCGCGCGCCTTCTCCAAGCTTCCTCGCCCGAGATATTTATCCTGGAATCGGAATGTTCTCTTTCTCGTTCATCTCGCTCCTTCTTCTCCCTCTCTTCCTCCTCTTGTCTACGTCTCTCAAGCTCCTTCCTCATCTCAGCCTCCATAGCCTTCCTCTTCTTCTCCACCCTATACTCCTCATAGTCATTCGGCCTCGCTGGATCATACTCTTCTATAACCGTAGACGTCACAGCCACCAATGCCGGTTGTGTAATGGCCTCGGCCAGAATTGGCTG

mRNA sequence

ATGTTTCTGAGTAGAAGAACCCGAGTAGGCAGTCCGTTGAAGTTGACACTCTTCGCCTTCTTCTCTGATTTCGTATCATTAGCGTTCACAATTACTCCAGCACGCAAGTCTGTCTTTTTCGCCATCAGAGGAGTGGTAATCCCTTGTTCTTGCTTCCCAAGCCCTTGCCCCTCTTTCCACCCCATCTTAGCCATCATCCTTTGTGCCGCTGTCATCTGCCCGCCAGCACCAACCCCCAACCCCCCAGTCTCCGACTTTCCAATGCTGAAGCCATCTACGCTACTTGGTGGAGATGGCGATCTTGGTATTGCCCCACTCTTCGCCGCGCGCCTTCTCCAAGCTTCCTCGCCCGAGATATTTATCCTGGAATCGGAATGTTCTCTTTCTCGTTCATCTCGCTCCTTCTTCTCCCTCTCTTCCTCCTCTTGTCTACGTCTCTCAAGCTCCTTCCTCATCTCAGCCTCCATAGCCTTCCTCTTCTTCTCCACCCTATACTCCTCATAGTCATTCGGCCTCGCTGGATCATACTCTTCTATAACCGTAGACGTCACAGCCACCAATGCCGGTTGTGTAATGGCCTCGGCCAGAATTGGCTG

Coding sequence (CDS)

ATGTTTCTGAGTAGAAGAACCCGAGTAGGCAGTCCGTTGAAGTTGACACTCTTCGCCTTCTTCTCTGATTTCGTATCATTAGCGTTCACAATTACTCCAGCACGCAAGTCTGTCTTTTTCGCCATCAGAGGAGTGGTAATCCCTTGTTCTTGCTTCCCAAGCCCTTGCCCCTCTTTCCACCCCATCTTAGCCATCATCCTTTGTGCCGCTGTCATCTGCCCGCCAGCACCAACCCCCAACCCCCCAGTCTCCGACTTTCCAATGCTGAAGCCATCTACGCTACTTGGTGGAGATGGCGATCTTGGTATTGCCCCACTCTTCGCCGCGCGCCTTCTCCAAGCTTCCTCGCCCGAGATATTTATCCTGGAATCGGAATGTTCTCTTTCTCGTTCATCTCGCTCCTTCTTCTCCCTCTCTTCCTCCTCTTGTCTACGTCTCTCAAGCTCCTTCCTCATCTCAGCCTCCATAGCCTTCCTCTTCTTCTCCACCCTATACTCCTCATAG

Protein sequence

MFLSRRTRVGSPLKLTLFAFFSDFVSLAFTITPARKSVFFAIRGVVIPCSCFPSPCPSFHPILAIILCAAVICPPAPTPNPPVSDFPMLKPSTLLGGDGDLGIAPLFAARLLQASSPEIFILESECSLSRSSRSFFSLSSSSCLRLSSSFLISASIAFLFFSTLYSS
Homology
[Close]
BLAST of Cmc08g0207481 vs. NCBI nr
Match: CAF2006917.1 (unnamed protein product [Brassica napus] >CDY44453.1 BnaC07g24910D [Brassica napus] >VDD38676.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-04
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 24 FVSLAFTITPARKSVFFAIRG-VVIPCSCFPSPCPSF 60
          F SLAFTITPA +SVF AI+G VVIPCS FPSPCP F
Sbjct: 2  FFSLAFTITPALRSVFLAIKGVVVIPCSDFPSPCPCF 38

[Close]
BLAST of Cmc08g0207481 vs. ExPASy TrEMBL
Match: A0A0A9JZE7 (Cl549_1b OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.3e-21
Identity = 63/101 (62.38%), Postives = 67/101 (66.34%), Query Frame = 0 

Query: 1   MFLSRRTRVGSPLKLTLFAFFSDFVSLAFTITPARKSVFFAIRGVVIPCSCFPSPCPSFH 60
           M  S +TRVG P KLT F FFS    L+ TITP   SVF A RG VIPCSC PSP PSF 
Sbjct: 48  MLRSSKTRVGGPSKLTDFGFFSGLELLSSTITPPLLSVFLATRGAVIPCSCLPSPWPSFQ 107

Query: 61  PILAIILCAAVICPPAPTPNPPVSDFPMLKPSTLLGGDGDL 102
           PILAIIL AAVI PPAPTPNP   + PM  PS   G +G L
Sbjct: 108 PILAIILWAAVIWPPAPTPNPAEEELPMANPSPWGGDEGVL 148

[Close]
BLAST of Cmc08g0207481 vs. ExPASy TrEMBL
Match: A0A0A9K5Z7 (Cl549_1b OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.8e-11
Identity = 43/67 (64.18%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 1   MFLSRRTRVGSPLKLTLFAFFSDFVSLAFTITPARKSVFFAIRGVVIPCSCFPSPCPSFH 60
           M  S +TRVG   KLT F FFS     + TITP R SVF A RG VIPCSC PSP PSF 
Sbjct: 48  MLRSSKTRVGRLSKLTDFGFFSGLELFSSTITPPRLSVFLATRGAVIPCSCLPSPWPSFQ 107

Query: 61  PILAIIL 68
           PILAIIL
Sbjct: 108 PILAIIL 114

[Close]
BLAST of Cmc08g0207481 vs. ExPASy TrEMBL
Match: A0A3P6EMB0 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC7T44236H PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 24 FVSLAFTITPARKSVFFAIRG-VVIPCSCFPSPCPSF 60
          F SLAFTITPA +SVF AI+G VVIPCS FPSPCP F
Sbjct: 2  FFSLAFTITPALRSVFLAIKGVVVIPCSDFPSPCPCF 38

[Close]
BLAST of Cmc08g0207481 vs. ExPASy TrEMBL
Match: A0A0D3DC08 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 24 FVSLAFTITPARKSVFFAIRG-VVIPCSCFPSPCPSF 60
          F SLAFTITPA +SVF AI+G VVIPCS FPSPCP F
Sbjct: 2  FFSLAFTITPALRSVFLAIKGVVVIPCSDFPSPCPCF 38

[Close]
BLAST of Cmc08g0207481 vs. ExPASy TrEMBL
Match: A0A078I5N9 (BnaC07g24910D protein OS=Brassica napus OX=3708 GN=BnaC07g24910D PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 24 FVSLAFTITPARKSVFFAIRG-VVIPCSCFPSPCPSF 60
          F SLAFTITPA +SVF AI+G VVIPCS FPSPCP F
Sbjct: 2  FFSLAFTITPALRSVFLAIKGVVVIPCSDFPSPCPCF 38

The following BLAST results are available for this feature:
BLAST of Cmc08g0207481 vs. NCBI nr
Match NameE-valueIdentityDescription
CAF2006917.14.0e-0478.38unnamed protein product [Brassica napus] >CDY44453.1 BnaC07g24910D [Brassica nap... [more]
BLAST of Cmc08g0207481 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc08g0207481 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9JZE72.3e-2162.38Cl549_1b OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A9K5Z74.8e-1164.18Cl549_1b OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A3P6EMB01.9e-0478.38Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC7T44236H PE=4 SV=1[more]
A0A0D3DC081.9e-0478.38Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1[more]
A0A078I5N91.9e-0478.38BnaC07g24910D protein OS=Brassica napus OX=3708 GN=BnaC07g24910D PE=4 SV=1[more]
BLAST of Cmc08g0207481 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0207481.1Cmc08g0207481.1mRNA