Cmc07g0205471 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0205471
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionMediator of RNA polymerase II transcription subunit 28
LocationCMiso1.1chr07: 26316253 .. 26320500 (-)
RNA-Seq ExpressionCmc07g0205471
SyntenyCmc07g0205471
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACATTTCATCCTTATTTTGGAGTCCATTCGTTGAGATTGCAAATTGGTAAAGTAAAAGGCAATTGAGGAATATATGAATGTTATGAGGGTAAGACGTGGATTAAGGAAAGAAAATTATTTTAAATGAAAGGAGAGGAAAGAACATAACAATAATATATAAATTGGAGAAAAAAAGAGCGAAGAAGTGAAGGAAGGCGTAGGTAGTAGATTCCTCCATCTCCTCCTCCTTTCCTTTGCGTCCGCCGTCCGACCAACAGTCCCTCGCGCATCAAACCTACGAGCTCTTGCTCACTCAGTTCGAACAAGTTGCGTAGCGTCGTTTATTCTCCATTTGGCACTCCAAGTTGTGCATCACGTTTTTCACGACTAGGTGTGTCTTGCAGCAACGTTTTTGGCTTGTGGGTAAGCTTTCGACTGTTACCCACACTTCGATTGGCTTCAAATCAGTTTATTGCTTTATTTTTCTTTTCGAAATGGAGTTGAGTGTTTAAATTGTTATTCTCAGCTCTTGAAGCTCTTTTTTTTTTTTTTTTTGTGTTTAGGTAAATTTTTAAGTATTAGATCAAGGTTCAGCGAGGTTGGACATGTTTTGGAATAGTTAGGACTTGATTAATGTGTCTTAGATCCGTCTTTGACATGTAAAAGTTTGTTGGTTGTAGTTTTGGGTTAATTCAGAGTGATTAATTGAGGGTAGTGGTAGAGTTTGGAACAGAATATTTCGATTGAAAAATATATCGGTTTTGATCAAGGTTGTTGAACTAATTTCTAACACTAAAACATGATGTTTGATCATGGAAGTGGATTTTTGGATCGAGAATTATAGGGCTTTTGGTGGAAGTGGTTTCCCACACCCATTCCACAATGTAAAGATATGTTTTGACTGTTTTGAATTGATAAATGGTTGAAAATGTGTTTTGGATGTTTGAAAATTTGTTTTGTACCATTTGAGTTTATTGAATCTGCTTATGATGTTTTAAATGTTTTCCTACTAGAAAATATGTTTTATGTGATTTGAGAATCGACTAGTATTTTGTATTCTTTTAGTTGATTTTGTCGAACCAAATTATATGACTATTTGGAACTAAGAAGCATCGATATGGATTCGAGACACAAATATGGCATGGCACAGACACAACATATGTCAATTTTTAAAATCTAGGACACAACACAAGGACACATTAATTAAAATGCACATTTTAAAAATTATATATTATTTTTATACCAAAAGAAAGTTCGGAAGTAAATGGGTTGATGCATTCATCTGTCTAAGAAACTTAGTTTTTATTTATTTGACACCCAAATTTTGTTATTATTGTCATGTGTCTTTTTAGTCTACTCAACAAATGTTCTATGCATATTTAACTGGTTTATTATACTAATAAGTGTTTGATATATGTCCAATAAGTATTGGAGTGTCAAAGTGTCCAACATGTATCAACACGAACAGGCTAGCCAAACTAAAGTGTTAGTGCTTCTTAGGTTTTGAGTGATGGTTGGAAGTGTTTAGACTAATTTTGAATTGAAAGTGTTTGTGTCTTGACTTTGGTTACTTCTCAAAACTTTTGAAAGCTTTGATTTGATGAATTCTATTTTCAGAATTCCTATTTGAAACTGCATGTTTTGTTGCCAATATTTCTGAATTATTTGATTAGGGCTACCCATATATGCCAGTTTTTGTGTTTTGAGGATTGTATGATATTTTTGTTGCATCCAAATTTAAAAATCTGTTATGATTGAAGCTTATTTGTGAAAAGACAAATATTTGTGGTTTGACATTCCTTTGAATGAAGATTCATGTGTGTGTTGCACTCACATGGCCTCACACTTATTTGATTGTTATTCTAGTCGATTGTTAATTGACCTCTCTTTTGGTTTGGTTGATTTTTAATCGGATCTCTGCTATTCTGGTCAATTGTAAACAGACATCTTTGGCGTTCTGACACAGAACTTCAAGGGATATCTACATTAGGATTTGATAGTTTGACCTAGAACTTGTTTATAATAAATTATCTCTGCTGATTTGTGTAAGTTGCAAAAGTTTATAATGGTTACGTTTTCACATTTTCTGTTTTAATAGCTGTATTGAAAAAAAATACGAGCTGTTACAGTCTTGTTCTTAAAAGAAGTTGGGTTCTGGCTTTTACCTCTTTCTGTTGGCCTTTGATTCACTACTACAGCTTATACTTTCTATTTTTAGTCTTATAATACAATTAAGGAAGTCTTTATGCTCAGGTTAGAATTACTACTGCTCACGATGAAAATGGCAGTTTTCAAGCATCTGGCTTTAAGTTTCAATTATTTTTATTTACTTTTATGTGCCATTATTGTGCCATAGGTTGTATATGTTGATGATTCTCGACTCTTTTTCATGCCATTATGTTCATGTAGTTGCAATATATATTTTTTTTGGTTCAGTTTGTTGCTCATATGTTGACGGGACTTTAAATAAGTACAACCCTGATGCCTATAGAATTGCTTTATGTTTTTCTATTAGTAAACTTGTCCAAGAATTGAAATGGAGTTTTGATTTTGACAAAGGATATGGCTGAACGACAATCACTTGACCAGCAACATTCACTTGATCCACAATCACAATCATCACAATCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCTAGAGAACTACAGGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGGTCAGTAACTGAACCCTCCCCTTTGATTCTTAAGTATAATTAGATTCTGAAAGCACAATGTAAAGTATTGTTTGGGTGGTTACCTTTACACATAGTTCGTTTGCTCTTAATAATTTTTGTATTATAGATTTAGATTACACTAAGCTAGTAGAGATTATCTTAATGTGCCCTCCAGTTTCTTCATAGCTATAGTACTCTCTTATGGATCTTCTGTTTCCTTTGCAAGTTCGCTGCTTGCTCTGCACGGACAGCAGCTGTAAGCTAAGGGAGCTATCTCTTAGTATTGTTTCATTCAACTAGTTCATTTGCTCTCCTCAAGCATGACAATCTGTAAATCAACTTTCATGTCAATGGTTCTGCATGAAAATGATTTCATCATGTTACATTTCATAATAATGGAGGGGTCTGCTGCTAAATCTTGATTAAATGCCCGACTGACCTCTTTAGTCATTGATTTTGTTGCATTAAAATTATGTGGATGTCTGGTTTCCGTTCATTTGTTGTATTGAAATATGTGGAGTGGAAGTGACGAGCCGTTTGACCCACTAAGTGGAGTTAATATGTTGTAGTTAGTAAGTTTTTGTTTGGGGTGTAGAGTTGTAAAATGGAGTTTTTTTGATAAATGTGAAAAGTAGAGAAAGAGAGGAAGATGAAGTTATTCAACAAATGTAAAAAATAGAGAGAGAGAGAAAAAAACATGGGGTTGCTCGATAGATATGAAAAGTAGATAAAGATGAGGAAAATGAAATTACTTGATAAATGTGCAACTTCAATAGATTTACTATTGAAGTTGAGTTGTTTAACACCTACCTAAAAAGTTGATTAACCAAACATCTAGCCATGCATGCTTTCAATTTGCTACTCACTTGTGGCTCGATGTTGGACCAAGGGAAGCTGGGCATTAAACTGATATGTCTGTGGTTAAGTGTTTGTGAAGAGTGAAGAAAATGACGCCATGTTTTGTTATTTGATTCAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAGGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGTAAACGCTTCTTTCCATTCAAAGAGGGACTCGCTTTTCTGATAAATGTAGATATGCTTTTATGTAATATTTGTGTTACTTCTTCCCATCAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAATGACATAATCAAGAAACAGGAGAGGCTCATTGAAGGATGGAAGAAGGATTTGAAAGAGCAGTTAGACAAACATAACAATGAGTTAGAGAAAGTTTAATAGAATAGGTTTGTGATCCCATGCTCTATTGTTTAGTTGTTTGTAGATCTTGTTAATTACATACTTTAACTGTGAATGTAGGTGGGGGCTTATTGACAAGTCTTGGTTAATTACATTCATTGTGCGGTTATGCCTAATTTTCTTCTTAAATTGTCGAAATAGTAACGAACTCTATGGATTTTAGCTTAAAAACGTATTTTATCATCTTAAA

mRNA sequence

AAACATTTCATCCTTATTTTGGAGTCCATTCGTTGAGATTGCAAATTGGTAAAGTAAAAGGCAATTGAGGAATATATGAATGTTATGAGGGTAAGACGTGGATTAAGGAAAGAAAATTATTTTAAATGAAAGGAGAGGAAAGAACATAACAATAATATATAAATTGGAGAAAAAAAGAGCGAAGAAGTGAAGGAAGGCGTAGGTAGTAGATTCCTCCATCTCCTCCTCCTTTCCTTTGCGTCCGCCGTCCGACCAACAGTCCCTCGCGCATCAAACCTACGAGCTCTTGCTCACTCAGTTCGAACAAGTTGCGTAGCGTCGTTTATTCTCCATTTGGCACTCCAAGTTGTGCATCACGTTTTTCACGACTAGGTGTGTCTTGCAGCAACGTTTTTGGCTTGTGGGATATGGCTGAACGACAATCACTTGACCAGCAACATTCACTTGATCCACAATCACAATCATCACAATCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCTAGAGAACTACAGGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAGGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAATGACATAATCAAGAAACAGGAGAGGCTCATTGAAGGATGGAAGAAGGATTTGAAAGAGCAGTTAGACAAACATAACAATGAGTTAGAGAAAGTTTAATAGAATAGGTTTGTGATCCCATGCTCTATTGTTTAGTTGTTTGTAGATCTTGTTAATTACATACTTTAACTGTGAATGTAGGTGGGGGCTTATTGACAAGTCTTGGTTAATTACATTCATTGTGCGGTTATGCCTAATTTTCTTCTTAAATTGTCGAAATAGTAACGAACTCTATGGATTTTAGCTTAAAAACGTATTTTATCATCTTAAA

Coding sequence (CDS)

ATGGCTGAACGACAATCACTTGACCAGCAACATTCACTTGATCCACAATCACAATCATCACAATCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCTAGAGAACTACAGGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAGGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAATGACATAATCAAGAAACAGGAGAGGCTCATTGAAGGATGGAAGAAGGATTTGAAAGAGCAGTTAGACAAACATAACAATGAGTTAGAGAAAGTTTAA

Protein sequence

MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLIEGWKKDLKEQLDKHNNELEKV
Homology
[Close]
BLAST of Cmc07g0205471 vs. NCBI nr
Match: XP_008454378.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo] >XP_008454380.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo] >KAA0044351.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis melo var. makuwa] >TYK29480.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis melo var. makuwa])

HSP 1 Score: 267.3 bits (682), Expect = 7.4e-68
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           EGWKKDLKEQLDKHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]
BLAST of Cmc07g0205471 vs. NCBI nr
Match: XP_004152267.1 (mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus] >KGN52780.1 hypothetical protein Csa_014841 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 3.5e-65
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 0 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ +DQQHSLDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKN+IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]
BLAST of Cmc07g0205471 vs. NCBI nr
Match: XP_038904970.1 (mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904972.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904973.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904974.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida])

HSP 1 Score: 255.4 bits (651), Expect = 2.9e-64
Identity = 134/141 (95.04%), Postives = 137/141 (97.16%), Query Frame = 0 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ LDQQH LDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQPLDQQHPLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELK+KN+IIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPNKVETLRKEISAIEEELKLKNEIIKKQERLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]
BLAST of Cmc07g0205471 vs. NCBI nr
Match: XP_022922953.1 (mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_022922954.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_022984538.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita maxima] >XP_022984539.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita maxima] >XP_023552182.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita pepo subsp. pepo] >XP_023552183.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita pepo subsp. pepo] >KAG6576925.1 Mediator of RNA polymerase II transcription subunit 28, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014951.1 Mediator of RNA polymerase II transcription subunit 28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.9 bits (642), Expect = 3.2e-63
Identity = 130/141 (92.20%), Postives = 138/141 (97.87%), Query Frame = 0 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+DIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]
BLAST of Cmc07g0205471 vs. NCBI nr
Match: XP_022149222.1 (mediator of RNA polymerase II transcription subunit 28 [Momordica charantia])

HSP 1 Score: 247.7 bits (631), Expect = 6.1e-62
Identity = 129/141 (91.49%), Postives = 134/141 (95.04%), Query Frame = 0 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MA+RQ +DQQH LDPQ QS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELK+KNDIIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           EGWKKDLK+QL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLAKHNNELEKV 141

[Close]
BLAST of Cmc07g0205471 vs. ExPASy Swiss-Prot
Match: Q9LFA5 (Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana OX=3702 GN=MED28 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-38
Identity = 85/131 (64.89%), Postives = 110/131 (83.97%), Query Frame = 0 

Query: 12  SLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFME 71
           S +  S +  +  ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFME
Sbjct: 26  SPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFME 85

Query: 72  AAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKVKNDIIKKQERLIEGWKKDLKEQ 131
           AAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK K+++IKK  RL +  +K +KEQ
Sbjct: 86  AAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKLVKEQ 145

Query: 132 LDKHNNELEKV 142
           ++KH +ELEKV
Sbjct: 146 IEKHRDELEKV 156

[Close]
BLAST of Cmc07g0205471 vs. ExPASy TrEMBL
Match: A0A1S3BZ89 (mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo OX=3656 GN=LOC103494796 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.6e-68
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           EGWKKDLKEQLDKHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]
BLAST of Cmc07g0205471 vs. ExPASy TrEMBL
Match: A0A5A7TRZ8 (Mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00780 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.6e-68
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           EGWKKDLKEQLDKHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]
BLAST of Cmc07g0205471 vs. ExPASy TrEMBL
Match: A0A0A0KT19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G00990 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.7e-65
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 0 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ +DQQHSLDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKN+IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]
BLAST of Cmc07g0205471 vs. ExPASy TrEMBL
Match: A0A6J1JAT8 (mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita maxima OX=3661 GN=LOC111482804 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.6e-63
Identity = 130/141 (92.20%), Postives = 138/141 (97.87%), Query Frame = 0 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+DIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]
BLAST of Cmc07g0205471 vs. ExPASy TrEMBL
Match: A0A6J1E897 (mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita moschata OX=3662 GN=LOC111430779 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.6e-63
Identity = 130/141 (92.20%), Postives = 138/141 (97.87%), Query Frame = 0 

Query: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60
           MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+DIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 121 EGWKKDLKEQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]
BLAST of Cmc07g0205471 vs. TAIR 10
Match: AT3G52860.1 (unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 160.6 bits (405), Expect = 9.1e-40
Identity = 85/131 (64.89%), Postives = 110/131 (83.97%), Query Frame = 0 

Query: 12  SLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFME 71
           S +  S +  +  ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFME
Sbjct: 26  SPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFME 85

Query: 72  AAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKVKNDIIKKQERLIEGWKKDLKEQ 131
           AAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK K+++IKK  RL +  +K +KEQ
Sbjct: 86  AAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKLVKEQ 145

Query: 132 LDKHNNELEKV 142
           ++KH +ELEKV
Sbjct: 146 IEKHRDELEKV 156

The following BLAST results are available for this feature:
BLAST of Cmc07g0205471 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008454378.17.4e-68100.00PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]... [more]
XP_004152267.13.5e-6595.74mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus] >KGN527... [more]
XP_038904970.12.9e-6495.04mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_0... [more]
XP_022922953.13.2e-6392.20mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_... [more]
XP_022149222.16.1e-6291.49mediator of RNA polymerase II transcription subunit 28 [Momordica charantia][more]
BLAST of Cmc07g0205471 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LFA51.3e-3864.89Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana O... [more]
BLAST of Cmc07g0205471 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BZ893.6e-68100.00mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo OX=3656 G... [more]
A0A5A7TRZ83.6e-68100.00Mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo var. maku... [more]
A0A0A0KT191.7e-6595.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G00990 PE=4 SV=1[more]
A0A6J1JAT81.6e-6392.20mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita maxima OX=36... [more]
A0A6J1E8971.6e-6392.20mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita moschata OX=... [more]
BLAST of Cmc07g0205471 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G52860.19.1e-4064.89unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 92..141
NoneNo IPR availablePFAMPF11594Med28coord: 30..125
e-value: 9.2E-19
score: 67.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR39117:SF1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 28coord: 1..141
IPR034456Mediator of RNA polymerase II transcription subunit 28PANTHERPTHR39117MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 28coord: 1..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0205471.1Cmc07g0205471.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016592 mediator complex