Cmc07g0202601 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0202601
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	nuclear transport factor 2-like
Location	CMiso1.1chr07: 24617038 .. 24619122 (-)
RNA-Seq Expression	Cmc07g0202601
Synteny	Cmc07g0202601

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTCTATCCCTCGATATTTGTTGACGATATAAATATCGAATTAACCTTCCCCTTCTCGAACCCTCGGCCAACGCTGTCGTCTCCAGTTGTTTCTCTCCTAAACCCCCCCGGCGGAAGAAATTTGCTCTCTCCTACCTCGGCGAATTTCGACGTTACGCGAATGGATCCCGACACGCTGGCTAAAGCATTCGTCGATCATTATTATTCCACTTTCGACGCCAATCGAGCCGGTCTTGGTAATCTCTACCAAGAAAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCTACTAATATCGTCGCCAAGCTCACTAGTCTACCCTTCCAGCAGTGCAAGCACAACGTTAGCACCATCGATTGCCAGCCTTCTGGTCCTTCTGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGTTGGTGAACAACATGCTCTCAAATTCAGTCAGGTAATGCGTTGTTCCTTTTAATCGGGATGTTTCTTGATTTGTTTCTAATTTTTGAGCCTTGTGGTTATTGATTTTGGATTTATGGATTTGATCTTTGTTGGATCTAGTGTTGTTTTGGAGTTGGCTGATTGATTTTTGTTATTATAGAGTTGGACTGTGTTGATTGAATTCGCGTTCTGATTCTCTAATTTATGTGGTTCTGCTGTTTAATATCATTATTGGGATTTGTGTAGTTTGCGTTTTCCTTGTTCTTGTAGATCTAGGGGCTTTCGTCGGAATTATATGTATTATAACGGGACACCGAATCTGTAGATCAAGGTTGAGACTGTGATGTGTTTATGTTGTTGCTTCAGTATGTCTCAGATGATTTATGTTTTTGCTTGGGGTTATTGTTTCTGAAAATAAATATTGTGGAACGAGTTCGTCCGGTCAATGGTCATCTTTTTGATTTATCAGCATGGGTGTAGTGAGAATGAGATAACAAAAGGAACGGTTTTTTGATTATTTAACTCAAAAAGTTTATGCTGAACCGATAATTTGTTTTAAGTTCATGGTTGCCTTTTTATTTACGGGGATTTCTGAGGTGACATGACACCTGCTCTTCTCTTCAAACAAAAGAATGCTACTGAGTTCGTTTCATGTGTCTTTTATTCCAAGTGAATTCGCTTGTTACAATTTCCTTGGCTTATTGTAGTGATACGTTTGAAGATCATGATCTATATTCTCATTGCAGTTTTTTTACCTTTAATATATCATTTTATGGGAATACAAATGTATGTTCGTCATTTATTTCCTCTAAATTCAAATCATTTTCAAATTCCATGTGGGTTGGAATTTTTTTTAAAGTAACGAGTCGTATTGTTAAAAAAATCTACTTTTTTTTTTTTTTATCTTTTATATTCTATGAATTGCTTTTCTGAATATTGATAACCATTGAGAATGTGATACATAGGCATCGCTTTTCTTGTTTGTACTTTGTATTGTTATGAAACAAATTCAATTATGTCAAGTTATGCTTGGAAGAATTGAGAATTTGTTACAACTACAGTATGTCCTGACTAATTGAATTGCTTTGGTGACAATTTTTCTTTTCTTGTTGTTAGTTGTGGTTCTATATTTTTAAACTTTGACTTGTATACTAATGCTATAGTTGCTTAGGCCAACGTCTTAGACCATTTGTTCTATAGGTTGTACTAGCTTAGCTGTGAGTTCTAAAGTATATCTTGTAATTGATTTTTTCTAACCAAAATGTATTTACTATGTTTATTCAGATGTTCCATTTGATGCCAACCCCACAAGGAAGCTTCTTTGTGCAGAACGACATTTTCCGATTGAACTATGCCTGAAGTTGAGAGTAATCCATGGTGTATTGGGAGACCTGAAATGTCAGGTTATTCAACCAGTTTGTTTATCACCGTTCAGTTTTTTAGACATTTCAAATTGGAACTTGGATTATATTTTATTGTGCTTATGCTTCAATGTGTGCCTATGCAAAGTCGAATTTCTTGGTTGTCATTGAGAATTGATGAAATAGATACTTTCTTCAAATTCAAGTGATTTGCTCAATACTCCCTGCATTCTGTTCAAAAAAATGTGAGTTGTACAGTTCGCTATTTATTATAAATTC

mRNA sequence

GATTCTATCCCTCGATATTTGTTGACGATATAAATATCGAATTAACCTTCCCCTTCTCGAACCCTCGGCCAACGCTGTCGTCTCCAGTTGTTTCTCTCCTAAACCCCCCCGGCGGAAGAAATTTGCTCTCTCCTACCTCGGCGAATTTCGACGTTACGCGAATGGATCCCGACACGCTGGCTAAAGCATTCGTCGATCATTATTATTCCACTTTCGACGCCAATCGAGCCGGTCTTGGTAATCTCTACCAAGAAAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCTACTAATATCGTCGCCAAGCTCACTAGTCTACCCTTCCAGCAGTGCAAGCACAACGTTAGCACCATCGATTGCCAGCCTTCTGGTCCTTCTGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGTTGGTGAACAACATGCTCTCAAATTCAGTCAGATGTTCCATTTGATGCCAACCCCACAAGGAAGCTTCTTTGTGCAGAACGACATTTTCCGATTGAACTATGCCTGAAGTTGAGAGTAATCCATGGTGTATTGGGAGACCTGAAATGTCAGGTTATTCAACCAGTTTGTTTATCACCGTTCAGTTTTTTAGACATTTCAAATTGGAACTTGGATTATATTTTATTGTGCTTATGCTTCAATGTGTGCCTATGCAAAGTCGAATTTCTTGGTTGTCATTGAGAATTGATGAAATAGATACTTTCTTCAAATTCAAGTGATTTGCTCAATACTCCCTGCATTCTGTTCAAAAAAATGTGAGTTGTACAGTTCGCTATTTATTATAAATTC

Coding sequence (CDS)

ATGGATCCCGACACGCTGGCTAAAGCATTCGTCGATCATTATTATTCCACTTTCGACGCCAATCGAGCCGGTCTTGGTAATCTCTACCAAGAAAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCTACTAATATCGTCGCCAAGCTCACTAGTCTACCCTTCCAGCAGTGCAAGCACAACGTTAGCACCATCGATTGCCAGCCTTCTGGTCCTTCTGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGTTGGTGAACAACATGCTCTCAAATTCAGTCAGATGTTCCATTTGATGCCAACCCCACAAGGAAGCTTCTTTGTGCAGAACGACATTTTCCGATTGAACTATGCCTGA

Protein sequence

MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQCKHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRLNYA

Homology

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BLAST of Cmc07g0202601 vs. NCBI nr
Match: XP_008454013.1 (PREDICTED: nuclear transport factor 2-like [Cucumis melo])

HSP 1 Score: 256.1 bits (653), Expect = 1.5e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC
Sbjct: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL
Sbjct: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of Cmc07g0202601 vs. NCBI nr
Match: XP_004152114.2 (nuclear transport factor 2B [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 6.5e-60
Identity = 113/123 (91.87%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPD +AKAFVDHYYSTFDANRA LGNLYQ+NSMLTFEGQKIQGS NIVAKL+SLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRANLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           KH+VST+DCQPSGP+GGMLVFVSGNLQL GEQHALKFSQMFHLMPTPQGSFFVQNDIFRL
Sbjct: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of Cmc07g0202601 vs. NCBI nr
Match: KGN53044.1 (hypothetical protein Csa_014783 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 6.5e-60
Identity = 113/123 (91.87%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPD +AKAFVDHYYSTFDANRA LGNLYQ+NSMLTFEGQKIQGS NIVAKL+SLPFQQC
Sbjct: 51  MDPDAVAKAFVDHYYSTFDANRANLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 110

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           KH+VST+DCQPSGP+GGMLVFVSGNLQL GEQHALKFSQMFHLMPTPQGSFFVQNDIFRL
Sbjct: 111 KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 170

Query: 121 NYA 124
           NYA
Sbjct: 171 NYA 173

[Close]

BLAST of Cmc07g0202601 vs. NCBI nr
Match: XP_022979987.1 (nuclear transport factor 2B [Cucurbita maxima])

HSP 1 Score: 236.9 bits (603), Expect = 9.4e-59
Identity = 111/123 (90.24%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPD +AKAFVDHYYSTFDANRAGL NLYQ+NSMLTFEGQKIQGS NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDNSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           +H+VST+DCQPSGP+GGMLVFVSGNLQL GEQHALKFSQMFHLMPTPQGSF+V NDIFRL
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of Cmc07g0202601 vs. NCBI nr
Match: XP_038694113.1 (nuclear transport factor 2B [Tripterygium wilfordii] >KAF5726656.1 nuclear transport factor 2-like [Tripterygium wilfordii])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 110/123 (89.43%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPD +AKAFV+HYYSTFDANR+GL NLYQE SMLTFEGQKIQGS+NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRSGLANLYQEGSMLTFEGQKIQGSSNIVAKLTSLPFQQC 60

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           KH++ST+DCQPSGP+GGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSF+V NDIFRL
Sbjct: 61  KHSISTVDCQPSGPAGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFYVFNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 123

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BLAST of Cmc07g0202601 vs. ExPASy Swiss-Prot
Match: Q9C7F5 (Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.6e-56
Identity = 102/123 (82.93%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPD ++KAFV+HYYSTFD NR GL  LYQE SMLTFEGQKIQG  +IVAKLTSLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           KH++ST+DCQPSGP+ GMLVFVSGNLQL GE+HALKFSQMFHLMPTPQGSF+V NDIFRL
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRL 123

Query: 121 NYA 124
           NYA
Sbjct: 124 NYA 126

[Close]

BLAST of Cmc07g0202601 vs. ExPASy Swiss-Prot
Match: Q9FZK4 (Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.9e-54
Identity = 101/123 (82.11%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPD +AKAFV+HYYSTFDANR GL +LYQE SMLTFEGQKIQGS NIVAKLT LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           KHN++T+DCQPSGP+GGMLVFVSGNLQL GEQHALKFSQMFHL+ + QG+++V NDIFRL
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 122

[Close]

BLAST of Cmc07g0202601 vs. ExPASy Swiss-Prot
Match: Q9XJ54 (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-40
Identity = 78/122 (63.93%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MD D +AKAFV+HYY TFD NR  L +LYQ+ SMLTFEGQ+  G+  I  KL SLPF QC
Sbjct: 1   MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
            H+++T+DCQPSGP GGMLVFVSG+L+   ++H LKFSQMF L+P   G+F+VQND+FRL
Sbjct: 61  HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRL 120

Query: 121 NY 123
           NY
Sbjct: 121 NY 121

[Close]

BLAST of Cmc07g0202601 vs. ExPASy Swiss-Prot
Match: Q75AA5 (Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=NTF2 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-31
Identity = 64/123 (52.03%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MD   LA+ F + YY+ FD +R+ LGNLY++ SMLTFE  ++QG+ +IV KL SLPFQ+ 
Sbjct: 3   MDFSALAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQLQGAKDIVEKLVSLPFQKV 62

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           +H ++T+D QP+ P+G +LV ++G+L +  EQ+A +FSQ+FHLMP    S++V NDIFRL
Sbjct: 63  QHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMP-EGNSYYVFNDIFRL 122

Query: 121 NYA 124
           NY+
Sbjct: 123 NYS 124

[Close]

BLAST of Cmc07g0202601 vs. ExPASy Swiss-Prot
Match: Q96VN3 (Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=ntf2 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-31
Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 2   DPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQCK 61
           D  ++A+ FV  YY TFD NRAGL  LY+++SMLTFE   IQG   I+ KLTSLPFQ+ +
Sbjct: 3   DFQSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETSAIQGVAGIIEKLTSLPFQKVQ 62

Query: 62  HNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRLN 121
           H VST+D QPSG  GG+LV V+G L +  E++ + ++Q F LMP   GS+FV ND+FRL 
Sbjct: 63  HQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFRLI 122

Query: 122 Y 123
           Y
Sbjct: 123 Y 123

[Close]

BLAST of Cmc07g0202601 vs. ExPASy TrEMBL
Match: A0A1S3BXM4 (nuclear transport factor 2-like OS=Cucumis melo OX=3656 GN=LOC103494563 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 7.2e-65
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC
Sbjct: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL
Sbjct: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of Cmc07g0202601 vs. ExPASy TrEMBL
Match: A0A0A0KW20 (NTF2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G012400 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.1e-60
Identity = 113/123 (91.87%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPD +AKAFVDHYYSTFDANRA LGNLYQ+NSMLTFEGQKIQGS NIVAKL+SLPFQQC
Sbjct: 51  MDPDAVAKAFVDHYYSTFDANRANLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 110

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           KH+VST+DCQPSGP+GGMLVFVSGNLQL GEQHALKFSQMFHLMPTPQGSFFVQNDIFRL
Sbjct: 111 KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 170

Query: 121 NYA 124
           NYA
Sbjct: 171 NYA 173

[Close]

BLAST of Cmc07g0202601 vs. ExPASy TrEMBL
Match: A0A6J1IQ79 (nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111479515 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.5e-59
Identity = 111/123 (90.24%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPD +AKAFVDHYYSTFDANRAGL NLYQ+NSMLTFEGQKIQGS NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDNSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           +H+VST+DCQPSGP+GGMLVFVSGNLQL GEQHALKFSQMFHLMPTPQGSF+V NDIFRL
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of Cmc07g0202601 vs. ExPASy TrEMBL
Match: A0A7J7BYM6 (Nuclear transport factor 2-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW22G00337 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.8e-59
Identity = 110/123 (89.43%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPD +AKAFV+HYYSTFDANR+GL NLYQE SMLTFEGQKIQGS+NIVAKLTSLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRSGLANLYQEGSMLTFEGQKIQGSSNIVAKLTSLPFQQC 60

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           KH++ST+DCQPSGP+GGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSF+V NDIFRL
Sbjct: 61  KHSISTVDCQPSGPAGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFYVFNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 123

[Close]

BLAST of Cmc07g0202601 vs. ExPASy TrEMBL
Match: A0A6J1F2G7 (nuclear transport factor 2B-like OS=Cucurbita moschata OX=3662 GN=LOC111439162 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 110/123 (89.43%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPD +AKAFVDHYYSTFDANR+GL NLYQ+NSMLTFEGQKIQGS NIVAKLTSLPFQQC
Sbjct: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           +H+VST+DCQPSGPSGG+LVFVSGNLQL GEQHALKFSQMFHLMPTPQGSF+V NDIFRL
Sbjct: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 122

Query: 121 NYA 124
           NYA
Sbjct: 123 NYA 125

[Close]

BLAST of Cmc07g0202601 vs. TAIR 10
Match: AT1G27970.1 (nuclear transport factor 2B )

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-57
Identity = 102/123 (82.93%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPD ++KAFV+HYYSTFD NR GL  LYQE SMLTFEGQKIQG  +IVAKLTSLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           KH++ST+DCQPSGP+ GMLVFVSGNLQL GE+HALKFSQMFHLMPTPQGSF+V NDIFRL
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRL 123

Query: 121 NYA 124
           NYA
Sbjct: 124 NYA 126

[Close]

BLAST of Cmc07g0202601 vs. TAIR 10
Match: AT1G27310.1 (nuclear transport factor 2A )

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-55
Identity = 101/123 (82.11%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPD +AKAFV+HYYSTFDANR GL +LYQE SMLTFEGQKIQGS NIVAKLT LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 120
           KHN++T+DCQPSGP+GGMLVFVSGNLQL GEQHALKFSQMFHL+ + QG+++V NDIFRL
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRL 120

Query: 121 NYA 124
           NYA
Sbjct: 121 NYA 122

[Close]

BLAST of Cmc07g0202601 vs. TAIR 10
Match: AT1G27970.2 (nuclear transport factor 2B )

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-54
Identity = 97/118 (82.20%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MDPDTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQC 60
           MDPD ++KAFV+HYYSTFD NR GL  LYQE SMLTFEGQKIQG  +IVAKLTSLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  KHNVSTIDCQPSGPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIF 119
           KH++ST+DCQPSGP+ GMLVFVSGNLQL GE+HALKFSQMFHLMPTPQGSF+V NDIF
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIF 121

[Close]

BLAST of Cmc07g0202601 vs. TAIR 10
Match: AT1G11570.2 (NTF2-like )

HSP 1 Score: 149.4 bits (376), Expect = 1.8e-36
Identity = 73/122 (59.84%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 4   DTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQCKHN 63
           + +A AFV+HYY  FD +R+ L +LY   S+LTFEGQ I G  NI  KL  LPF QC H 
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 64  VSTIDCQPS---GPSGGMLVFVSGNLQLVGEQHALKFSQMFHLMPTPQGSFFVQNDIFRL 123
           +ST+D QPS   G  GG+LVFVSG++QL GE H L+FSQ FHL+P  QGSFFVQN++FRL
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQNEMFRL 129

[Close]

BLAST of Cmc07g0202601 vs. TAIR 10
Match: AT1G11570.1 (NTF2-like )

HSP 1 Score: 114.0 bits (284), Expect = 8.5e-26
Identity = 57/103 (55.34%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 4   DTLAKAFVDHYYSTFDANRAGLGNLYQENSMLTFEGQKIQGSTNIVAKLTSLPFQQCKHN 63
           + +A AFV+HYY  FD +R+ L +LY   S+LTFEGQ I G  NI  KL  LPF QC H 
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 64  VSTIDCQPS---GPSGGMLVFVSGNLQLVGEQHALKFSQMFHL 104
           +ST+D QPS   G  GG+LVFVSG++QL GE H L+FSQ++ L
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQVYLL 112

The following BLAST results are available for this feature:

BLAST of Cmc07g0202601 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454013.1	1.5e-64	100.00	PREDICTED: nuclear transport factor 2-like [Cucumis melo]	[more]
XP_004152114.2	6.5e-60	91.87	nuclear transport factor 2B [Cucumis sativus]	[more]
KGN53044.1	6.5e-60	91.87	hypothetical protein Csa_014783 [Cucumis sativus]	[more]
XP_022979987.1	9.4e-59	90.24	nuclear transport factor 2B [Cucurbita maxima]	[more]
XP_038694113.1	1.6e-58	89.43	nuclear transport factor 2B [Tripterygium wilfordii] >KAF5726656.1 nuclear trans...	[more]

BLAST of Cmc07g0202601 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C7F5	1.6e-56	82.93	Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1	[more]
Q9FZK4	1.9e-54	82.11	Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1	[more]
Q9XJ54	1.2e-40	63.93	Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2...	[more]
Q75AA5	1.3e-31	52.03	Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / ...	[more]
Q96VN3	3.0e-31	54.55	Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /...	[more]

BLAST of Cmc07g0202601 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BXM4	7.2e-65	100.00	nuclear transport factor 2-like OS=Cucumis melo OX=3656 GN=LOC103494563 PE=4 SV=...	[more]
A0A0A0KW20	3.1e-60	91.87	NTF2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G012400 PE=4 S...	[more]
A0A6J1IQ79	4.5e-59	90.24	nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111479515 PE=4 SV=...	[more]
A0A7J7BYM6	7.8e-59	89.43	Nuclear transport factor 2-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW2...	[more]
A0A6J1F2G7	1.3e-58	89.43	nuclear transport factor 2B-like OS=Cucurbita moschata OX=3662 GN=LOC111439162 P...	[more]

BLAST of Cmc07g0202601 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27970.1	1.1e-57	82.93	nuclear transport factor 2B	[more]
AT1G27310.1	1.4e-55	82.11	nuclear transport factor 2A	[more]
AT1G27970.2	1.5e-54	82.20	nuclear transport factor 2B	[more]
AT1G11570.2	1.8e-36	59.84	NTF2-like	[more]
AT1G11570.1	8.5e-26	55.34	NTF2-like	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 7..120 e-value: 5.3E-37 score: 127.0
None	No IPR available	GENE3D	3.10.450.50		coord: 1..123 e-value: 5.9E-44 score: 151.2
None	No IPR available	PANTHER	PTHR12612:SF36	NUCLEAR TRANSPORT FACTOR 2B	coord: 1..123
None	No IPR available	PANTHER	PTHR12612	NUCLEAR TRANSPORT FACTOR 2	coord: 1..123
IPR018222	Nuclear transport factor 2, eukaryote	PROSITE	PS50177	NTF2_DOMAIN	coord: 6..120 score: 33.927605
IPR018222	Nuclear transport factor 2, eukaryote	CDD	cd00780	NTF2	coord: 2..122 e-value: 5.57893E-48 score: 147.814
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 3..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0202601.1	Cmc07g0202601.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051028	mRNA transport
biological_process	GO:0006606	protein import into nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0044613	nuclear pore central transport channel