Cmc07g0198311 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0198311
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr07: 21525589 .. 21526335 (+)
RNA-Seq Expression	Cmc07g0198311
Synteny	Cmc07g0198311

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAGAAATCGAAGCCATTGAAGAGCTGACTGATCTTCCTAAAGGTCACCAGACAATTAGGGTCAAGTGGGTGTACAAGACAAAATTGAAAGAGAATGGCGAAGTTGACAAGTACAAGGCGCACTTAGTTGCAAAGGGGTATAAGCAGGAATTTGGTGTTGACTACAAAGAAGTCTTTGCTCCAGTTGCAAGACATGATATAATCAGATTGATGGTCTCTTTGGCAGCCCAAAATTCATGGCCTATTTTCCAGTTGGATGTGGAATCAACATTTTTACATGGTGAGCTCCAAGAAAAGGTATTTATCGATCAACCTCTTGGTTATGTGAAGGTCAAAGATGAACACAAAGTTTATAGACTCAAAAAGGCATTATACAGACTAAATCAAGCTCCACGAGCATGGTATAGTCATATAAATGCTTATTTTACTAAGGAGGGATTTAAGAAATGTCCATATGAGTATACTCTTTTTACAAAATTTGGAGATGGAAGAAAATTACTCATTGTTTGCTTATATGTGGATGATCTTATTTTTATTGGAAACGACAATGCCATGATTGAGAAATTTAAGAGATCTATGATGGTTGAATTTGAAATTTCTGATCTTGGAAAAATGCATTATTTTTTGGGGATTGAAGTGGTTCAATTAGCAAGTGGAATCTTTATTTCTCAAAAAAAAAAAAAAAAAAATATGCACAAGAGATGTTGGACAGGTTCCGAATGGCAAATTGCAATCTTGTGA

mRNA sequence

ATGGATGAAGAAATCGAAGCCATTGAAGAGCTGACTGATCTTCCTAAAGGTCACCAGACAATTAGGGTCAAGTGGGTGTACAAGACAAAATTGAAAGAGAATGGCGAAGTTGACAAGTACAAGGCGCACTTAGTTGCAAAGGGGTATAAGCAGGAATTTGGTGTTGACTACAAAGAAGTCTTTGCTCCAGTTGCAAGACATGATATAATCAGATTGATGGTCTCTTTGGCAGCCCAAAATTCATGGCCTATTTTCCAGTTGGATGTGGAATCAACATTTTTACATGGTGAGCTCCAAGAAAAGGTATTTATCGATCAACCTCTTGGTTATGTGAAGGTCAAAGATGAACACAAAGTTTATAGACTCAAAAAGGCATTATACAGACTAAATCAAGCTCCACGAGCATGGTATAGTCATATAAATGCTTATTTTACTAAGGAGGGATTTAAGAAATGTCCATATGAGTATACTCTTTTTACAAAATTTGGAGATGGAAGAAAATTACTCATTGTTTGCTTATATGTGGATGATCTTATTTTTATTGGAAACGACAATGCCATGATTGAGAAATTTAAGAGATCTATGATGGTTGAATTTGAAATTTCTGATCTTGGAAAAATGCATTATTTTTTGGGGATTGAAGTGGTTCAATTAGCAAGTGGAATCTTTATTTCTCAAAAAAAAAAAAAAAAAAATATGCACAAGAGATGTTGGACAGGTTCCGAATGGCAAATTGCAATCTTGTGA

Coding sequence (CDS)

ATGGATGAAGAAATCGAAGCCATTGAAGAGCTGACTGATCTTCCTAAAGGTCACCAGACAATTAGGGTCAAGTGGGTGTACAAGACAAAATTGAAAGAGAATGGCGAAGTTGACAAGTACAAGGCGCACTTAGTTGCAAAGGGGTATAAGCAGGAATTTGGTGTTGACTACAAAGAAGTCTTTGCTCCAGTTGCAAGACATGATATAATCAGATTGATGGTCTCTTTGGCAGCCCAAAATTCATGGCCTATTTTCCAGTTGGATGTGGAATCAACATTTTTACATGGTGAGCTCCAAGAAAAGGTATTTATCGATCAACCTCTTGGTTATGTGAAGGTCAAAGATGAACACAAAGTTTATAGACTCAAAAAGGCATTATACAGACTAAATCAAGCTCCACGAGCATGGTATAGTCATATAAATGCTTATTTTACTAAGGAGGGATTTAAGAAATGTCCATATGAGTATACTCTTTTTACAAAATTTGGAGATGGAAGAAAATTACTCATTGTTTGCTTATATGTGGATGATCTTATTTTTATTGGAAACGACAATGCCATGATTGAGAAATTTAAGAGATCTATGATGGTTGAATTTGAAATTTCTGATCTTGGAAAAATGCATTATTTTTTGGGGATTGAAGTGGTTCAATTAGCAAGTGGAATCTTTATTTCTCAAAAAAAAAAAAAAAAAAATATGCACAAGAGATGTTGGACAGGTTCCGAATGGCAAATTGCAATCTTGTGA

Protein sequence

MDEEIEAIEELTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGVDYKEVFAPVARHDIIRLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKDEHKVYRLKKALYRLNQAPRAWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYVDDLIFIGNDNAMIEKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKKKKKNMHKRCWTGSEWQIAIL

Homology

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BLAST of Cmc07g0198311 vs. NCBI nr
Match: RVW92024.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 376.3 bits (965), Expect = 2.0e-100
Identity = 185/241 (76.76%), Postives = 208/241 (86.31%), Query Frame = 0


Query: 1    MDEEIEAIE-----ELTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGV 60
            MD EI AIE     EL++LPKGH+TI VKWVYKTKLKENGEVDKYKA LVAKGYKQEFGV
Sbjct: 868  MDAEIAAIERNDTWELSELPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGV 927

Query: 61   DYKEVFAPVARHDIIRLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKD 120
            DYKEVFAPVARHD IRL+++LAAQNSWPIFQLDV+S FLHG L+E+VF+DQP GY+KVK+
Sbjct: 928  DYKEVFAPVARHDTIRLVIALAAQNSWPIFQLDVKSAFLHGNLEEQVFVDQPPGYIKVKN 987

Query: 121  EHKVYRLKKALYRLNQAPRAWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYV 180
            EHKVYRLKKALY L QAPRAWYS I AYF KEGF+KCPYE+TLF K  +G K+LIVCLYV
Sbjct: 988  EHKVYRLKKALYGLKQAPRAWYSRIEAYFLKEGFQKCPYEHTLFVKVSNGGKMLIVCLYV 1047

Query: 181  DDLIFIGNDNAMIEKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKKKKKNMHK 237
            DDLIF GND+ M E+FK+SMMVEFE+SDLG MHYFLGIEVVQ  +GIFISQKK  + +  
Sbjct: 1048 DDLIFTGNDSVMFERFKKSMMVEFEMSDLGMMHYFLGIEVVQSDTGIFISQKKYVREILN 1107

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BLAST of Cmc07g0198311 vs. NCBI nr
Match: RVX00732.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 366.7 bits (940), Expect = 1.6e-97
Identity = 182/241 (75.52%), Postives = 202/241 (83.82%), Query Frame = 0


Query: 1   MDEEIEAIE-----ELTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGV 60
           MD EI  IE     EL+ LPKGH+TI VKWVYKTKLKENGEVDKYKA LVAKGYKQEFGV
Sbjct: 324 MDAEIATIERNNTWELSKLPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGV 383

Query: 61  DYKEVFAPVARHDIIRLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKD 120
           DYKEVF+PVARHD IRL+++LAAQNSWPIFQLDV   FLHG L+E VF+DQP GY+KVK+
Sbjct: 384 DYKEVFSPVARHDTIRLVIALAAQNSWPIFQLDVILAFLHGNLEEHVFVDQPPGYIKVKN 443

Query: 121 EHKVYRLKKALYRLNQAPRAWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYV 180
           EHKVYRLKKALY L QAPRAWYS I AYF KEGF+KCPYE+TLF K  +G K+LIVCLYV
Sbjct: 444 EHKVYRLKKALYGLKQAPRAWYSRIEAYFLKEGFQKCPYEHTLFVKVSNGGKMLIVCLYV 503

Query: 181 DDLIFIGNDNAMIEKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKKKKKNMHK 237
           DDLIF GND+ M E+FK+SMMVEFE+SDLG MHYFLGIEVVQ   GIFISQKK  + +  
Sbjct: 504 DDLIFTGNDSVMFERFKKSMMVEFEMSDLGMMHYFLGIEVVQSDIGIFISQKKYVREILN 563

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BLAST of Cmc07g0198311 vs. NCBI nr
Match: RVW34895.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 359.0 bits (920), Expect = 3.3e-95
Identity = 175/233 (75.11%), Postives = 202/233 (86.70%), Query Frame = 0


Query: 1   MDEEIEAIE-----ELTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGV 60
           MD+EIEAIE     EL DLPKGH+TI VKWV+KTKLK+NG VDKYKA LVAKGYK E+G+
Sbjct: 43  MDDEIEAIERNDTWELIDLPKGHKTIGVKWVFKTKLKKNGAVDKYKARLVAKGYKHEYGI 102

Query: 61  DYKEVFAPVARHDIIRLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKD 120
           DY EVFAPVARHD IRL+++LAAQNSWPI+QLDV+STFLHG L+E V ++QPLG +K+++
Sbjct: 103 DYTEVFAPVARHDTIRLVITLAAQNSWPIYQLDVKSTFLHGNLEEHVLVEQPLGRIKIEN 162

Query: 121 EHKVYRLKKALYRLNQAPRAWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYV 180
           EHKVYRLKKALY L QAPRAW+SHI AYF KEGF K PYE+TLF K GD  KLLIVCLYV
Sbjct: 163 EHKVYRLKKALYGLKQAPRAWFSHIEAYFLKEGFHKYPYEHTLFVKIGDKGKLLIVCLYV 222

Query: 181 DDLIFIGNDNAMIEKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKK 229
           DDLIFIGND+ M ++FK+SMMVEFE+S+LG MHYFLGIEVVQ A+ IFISQKK
Sbjct: 223 DDLIFIGNDDVMFKEFKKSMMVEFEMSNLGMMHYFLGIEVVQSANEIFISQKK 275

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BLAST of Cmc07g0198311 vs. NCBI nr
Match: KZV47100.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Dorcoceras hygrometricum])

HSP 1 Score: 357.5 bits (916), Expect = 9.6e-95
Identity = 174/233 (74.68%), Postives = 199/233 (85.41%), Query Frame = 0


Query: 1   MDEEIEAIEE-----LTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGV 60
           MD EI AIE+     LT+LP+G +TI VKW+YKTK+KENGEVDK+KA LVAKGYKQE+GV
Sbjct: 52  MDAEIAAIEKNNTWTLTELPQGQKTIGVKWIYKTKMKENGEVDKFKARLVAKGYKQEYGV 111

Query: 61  DYKEVFAPVARHDIIRLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKD 120
           DYKEVFAPVARHD IRL+++LAAQ SWPIFQLDV+S FLHG+L+E+V+IDQP GY+K+ +
Sbjct: 112 DYKEVFAPVARHDTIRLVIALAAQYSWPIFQLDVKSAFLHGDLEEQVYIDQPPGYIKIGN 171

Query: 121 EHKVYRLKKALYRLNQAPRAWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYV 180
           EHKVY+LKKALY L QAPRAWYS I  YF K GFKKCPYE+TLFTKF D  K+LIVCLYV
Sbjct: 172 EHKVYKLKKALYGLKQAPRAWYSRIETYFLKTGFKKCPYEHTLFTKFEDDGKMLIVCLYV 231

Query: 181 DDLIFIGNDNAMIEKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKK 229
           DDL F GND +M E FK SMMVEF++SDLGKMHYFLGIEVVQ   GIFISQKK
Sbjct: 232 DDLSFTGNDVSMFEDFKESMMVEFDMSDLGKMHYFLGIEVVQSTGGIFISQKK 284

[Close]

BLAST of Cmc07g0198311 vs. NCBI nr
Match: KAE8676825.1 (hypothetical protein F3Y22_tig00111582pilonHSYRG01307 [Hibiscus syriacus])

HSP 1 Score: 350.1 bits (897), Expect = 1.5e-92
Identity = 169/233 (72.53%), Postives = 196/233 (84.12%), Query Frame = 0


Query: 1   MDEEIEAIE-----ELTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGV 60
           MD EI AIE     EL DLP G +TI VKWVYKTKLKENGE+DK+KA LVAKGY QEFG+
Sbjct: 80  MDAEIAAIEINDTWELCDLPNGQKTIGVKWVYKTKLKENGEIDKHKARLVAKGYMQEFGI 139

Query: 61  DYKEVFAPVARHDIIRLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKD 120
           DYKEVFAPVARHD IRL++++AAQNSWPIFQLDV+S FLHG+L+E+VFIDQP GY K+ +
Sbjct: 140 DYKEVFAPVARHDTIRLVIAMAAQNSWPIFQLDVKSAFLHGDLKEEVFIDQPPGYEKIGN 199

Query: 121 EHKVYRLKKALYRLNQAPRAWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYV 180
           EHKVY+LKKALY L QAPRAWY+ I  YF KEGF+KCP+EYTLF K  DG K+ IVCLYV
Sbjct: 200 EHKVYKLKKALYGLKQAPRAWYNRIKTYFLKEGFQKCPHEYTLFIKIEDGGKMFIVCLYV 259

Query: 181 DDLIFIGNDNAMIEKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKK 229
           DDLI+ G++  M E FK+SMM EFE+SDLG MHYFLGIEV+Q ++GIFISQKK
Sbjct: 260 DDLIYTGSNTVMFESFKKSMMAEFEMSDLGMMHYFLGIEVLQSSAGIFISQKK 312

[Close]

BLAST of Cmc07g0198311 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.1e-40
Identity = 83/235 (35.32%), Postives = 147/235 (62.55%), Query Frame = 0


Query: 1    MDEEIEAIE-----ELTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGV 60
            M EE+E+++     +L +LPKG + ++ KWV+K K   + ++ +YKA LV KG++Q+ G+
Sbjct: 830  MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61   DYKEVFAPVARHDIIRLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKD 120
            D+ E+F+PV +   IR ++SLAA     + QLDV++ FLHG+L+E+++++QP G+     
Sbjct: 890  DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGK 949

Query: 121  EHKVYRLKKALYRLNQAPRAWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYV 180
            +H V +L K+LY L QAPR WY   +++   + + K   +  ++ K       +I+ LYV
Sbjct: 950  KHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYV 1009

Query: 181  DDLIFIGNDNAMIEKFKRSMMVEFEISDLGKMHYFLGIEVV--QLASGIFISQKK 229
            DD++ +G D  +I K K  +   F++ DLG     LG+++V  + +  +++SQ+K
Sbjct: 1010 DDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEK 1064

[Close]

BLAST of Cmc07g0198311 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.4e-40
Identity = 83/220 (37.73%), Postives = 131/220 (59.55%), Query Frame = 0


Query: 10   ELTDLPKGHQTI-RVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGVDYKEVFAPVARHD 69
            +L   P  H TI   +W++  K   +G +++YKA LVAKGY Q  G+DY E F+PV +  
Sbjct: 986  DLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKST 1045

Query: 70   IIRLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKDEHKVYRLKKALYR 129
             IR+++ +A   SWPI QLDV + FL G L + V++ QP G++     + V +L+KALY 
Sbjct: 1046 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYG 1105

Query: 130  LNQAPRAWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYVDDLIFIGNDNAMI 189
            L QAPRAWY  +  Y    GF     + +LF     G+ ++ + +YVDD++  GND  ++
Sbjct: 1106 LKQAPRAWYVELRNYLLTIGFVNSVSDTSLFV-LQRGKSIVYMLVYVDDILITGNDPTLL 1165

Query: 190  EKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKK 229
                 ++   F + D  ++HYFLGIE  ++ +G+ +SQ++
Sbjct: 1166 HNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRR 1204

[Close]

BLAST of Cmc07g0198311 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-40
Identity = 80/214 (37.38%), Postives = 126/214 (58.88%), Query Frame = 0


Query: 15   PKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGVDYKEVFAPVARHDIIRLMV 74
            P     +  +W++  K   +G +++YKA LVAKGY Q  G+DY E F+PV +   IR+++
Sbjct: 975  PPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVL 1034

Query: 75   SLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKDEHKVYRLKKALYRLNQAPR 134
             +A   SWPI QLDV + FL G L ++V++ QP G+V       V RL+KA+Y L QAPR
Sbjct: 1035 GVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPR 1094

Query: 135  AWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYVDDLIFIGNDNAMIEKFKRS 194
            AWY  +  Y    GF     + +LF     GR ++ + +YVDD++  GND  +++    +
Sbjct: 1095 AWYVELRTYLLTVGFVNSISDTSLFV-LQRGRSIIYMLVYVDDILITGNDTVLLKHTLDA 1154

Query: 195  MMVEFEISDLGKMHYFLGIEVVQLASGIFISQKK 229
            +   F + +   +HYFLGIE  ++  G+ +SQ++
Sbjct: 1155 LSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRR 1187

[Close]

BLAST of Cmc07g0198311 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 6.6e-30
Identity = 74/228 (32.46%), Postives = 121/228 (53.07%), Query Frame = 0


Query: 11   LTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGVDYKEVFAPVARHDII 70
            +T  P+    +  +WV+  K  E G   +YKA LVA+G+ Q++ +DY+E FAPVAR    
Sbjct: 925  ITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSF 984

Query: 71   RLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKDEHKVYRLKKALYRLN 130
            R ++SL  Q +  + Q+DV++ FL+G L+E++++  P G     D   V +L KA+Y L 
Sbjct: 985  RFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSD--NVCKLNKAIYGLK 1044

Query: 131  QAPRAWYSHI-----NAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYVDDLIFIGNDN 190
            QA R W+           F      +C Y        G+  + + V LYVDD++    D 
Sbjct: 1045 QAARCWFEVFEQALKECEFVNSSVDRCIY----ILDKGNINENIYVLLYVDDVVIATGDM 1104

Query: 191  AMIEKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKKKKKNM 234
              +  FKR +M +F ++DL ++ +F+GI +      I++SQ    K +
Sbjct: 1105 TRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKI 1146

[Close]

BLAST of Cmc07g0198311 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 5.1e-14
Identity = 43/136 (31.62%), Postives = 74/136 (54.41%), Query Frame = 0


Query: 87  LDVESTFLHGELQEKVFIDQPLGYVKVKDEHKVYRLKKALYRLNQAPRAWYSHINAYFTK 146
           +DV++ FL+  + E +++ QP G+V  ++   V+ L   +Y L QAP  W  HIN    K
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 147 EGFKKCPYEYTL-FTKFGDGRKLLIVCLYVDDLIFIGNDNAMIEKFKRSMMVEFEISDLG 206
            GF +   E+ L F    DG   + + +YVDDL+       + ++ K+ +   + + DLG
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGP--IYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLG 120

Query: 207 KMHYFLGIEVVQLASG 222
           K+  FLG+ + Q ++G
Sbjct: 121 KVDKFLGLNIHQSSNG 134

[Close]

BLAST of Cmc07g0198311 vs. ExPASy TrEMBL
Match: A0A438I5N6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1909 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 9.7e-101
Identity = 185/241 (76.76%), Postives = 208/241 (86.31%), Query Frame = 0


Query: 1    MDEEIEAIE-----ELTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGV 60
            MD EI AIE     EL++LPKGH+TI VKWVYKTKLKENGEVDKYKA LVAKGYKQEFGV
Sbjct: 868  MDAEIAAIERNDTWELSELPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGV 927

Query: 61   DYKEVFAPVARHDIIRLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKD 120
            DYKEVFAPVARHD IRL+++LAAQNSWPIFQLDV+S FLHG L+E+VF+DQP GY+KVK+
Sbjct: 928  DYKEVFAPVARHDTIRLVIALAAQNSWPIFQLDVKSAFLHGNLEEQVFVDQPPGYIKVKN 987

Query: 121  EHKVYRLKKALYRLNQAPRAWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYV 180
            EHKVYRLKKALY L QAPRAWYS I AYF KEGF+KCPYE+TLF K  +G K+LIVCLYV
Sbjct: 988  EHKVYRLKKALYGLKQAPRAWYSRIEAYFLKEGFQKCPYEHTLFVKVSNGGKMLIVCLYV 1047

Query: 181  DDLIFIGNDNAMIEKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKKKKKNMHK 237
            DDLIF GND+ M E+FK+SMMVEFE+SDLG MHYFLGIEVVQ  +GIFISQKK  + +  
Sbjct: 1048 DDLIFTGNDSVMFERFKKSMMVEFEMSDLGMMHYFLGIEVVQSDTGIFISQKKYVREILN 1107

[Close]

BLAST of Cmc07g0198311 vs. ExPASy TrEMBL
Match: A0A438IVG3 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2919 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 7.7e-98
Identity = 182/241 (75.52%), Postives = 202/241 (83.82%), Query Frame = 0


Query: 1   MDEEIEAIE-----ELTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGV 60
           MD EI  IE     EL+ LPKGH+TI VKWVYKTKLKENGEVDKYKA LVAKGYKQEFGV
Sbjct: 324 MDAEIATIERNNTWELSKLPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGV 383

Query: 61  DYKEVFAPVARHDIIRLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKD 120
           DYKEVF+PVARHD IRL+++LAAQNSWPIFQLDV   FLHG L+E VF+DQP GY+KVK+
Sbjct: 384 DYKEVFSPVARHDTIRLVIALAAQNSWPIFQLDVILAFLHGNLEEHVFVDQPPGYIKVKN 443

Query: 121 EHKVYRLKKALYRLNQAPRAWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYV 180
           EHKVYRLKKALY L QAPRAWYS I AYF KEGF+KCPYE+TLF K  +G K+LIVCLYV
Sbjct: 444 EHKVYRLKKALYGLKQAPRAWYSRIEAYFLKEGFQKCPYEHTLFVKVSNGGKMLIVCLYV 503

Query: 181 DDLIFIGNDNAMIEKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKKKKKNMHK 237
           DDLIF GND+ M E+FK+SMMVEFE+SDLG MHYFLGIEVVQ   GIFISQKK  + +  
Sbjct: 504 DDLIFTGNDSVMFERFKKSMMVEFEMSDLGMMHYFLGIEVVQSDIGIFISQKKYVREILN 563

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BLAST of Cmc07g0198311 vs. ExPASy TrEMBL
Match: A0A438DHD9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1266 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.6e-95
Identity = 175/233 (75.11%), Postives = 202/233 (86.70%), Query Frame = 0


Query: 1   MDEEIEAIE-----ELTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGV 60
           MD+EIEAIE     EL DLPKGH+TI VKWV+KTKLK+NG VDKYKA LVAKGYK E+G+
Sbjct: 43  MDDEIEAIERNDTWELIDLPKGHKTIGVKWVFKTKLKKNGAVDKYKARLVAKGYKHEYGI 102

Query: 61  DYKEVFAPVARHDIIRLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKD 120
           DY EVFAPVARHD IRL+++LAAQNSWPI+QLDV+STFLHG L+E V ++QPLG +K+++
Sbjct: 103 DYTEVFAPVARHDTIRLVITLAAQNSWPIYQLDVKSTFLHGNLEEHVLVEQPLGRIKIEN 162

Query: 121 EHKVYRLKKALYRLNQAPRAWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYV 180
           EHKVYRLKKALY L QAPRAW+SHI AYF KEGF K PYE+TLF K GD  KLLIVCLYV
Sbjct: 163 EHKVYRLKKALYGLKQAPRAWFSHIEAYFLKEGFHKYPYEHTLFVKIGDKGKLLIVCLYV 222

Query: 181 DDLIFIGNDNAMIEKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKK 229
           DDLIFIGND+ M ++FK+SMMVEFE+S+LG MHYFLGIEVVQ A+ IFISQKK
Sbjct: 223 DDLIFIGNDDVMFKEFKKSMMVEFEMSNLGMMHYFLGIEVVQSANEIFISQKK 275

[Close]

BLAST of Cmc07g0198311 vs. ExPASy TrEMBL
Match: A0A2Z7CJ54 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Dorcoceras hygrometricum OX=472368 GN=F511_32460 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 4.7e-95
Identity = 174/233 (74.68%), Postives = 199/233 (85.41%), Query Frame = 0


Query: 1   MDEEIEAIEE-----LTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGV 60
           MD EI AIE+     LT+LP+G +TI VKW+YKTK+KENGEVDK+KA LVAKGYKQE+GV
Sbjct: 52  MDAEIAAIEKNNTWTLTELPQGQKTIGVKWIYKTKMKENGEVDKFKARLVAKGYKQEYGV 111

Query: 61  DYKEVFAPVARHDIIRLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKD 120
           DYKEVFAPVARHD IRL+++LAAQ SWPIFQLDV+S FLHG+L+E+V+IDQP GY+K+ +
Sbjct: 112 DYKEVFAPVARHDTIRLVIALAAQYSWPIFQLDVKSAFLHGDLEEQVYIDQPPGYIKIGN 171

Query: 121 EHKVYRLKKALYRLNQAPRAWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYV 180
           EHKVY+LKKALY L QAPRAWYS I  YF K GFKKCPYE+TLFTKF D  K+LIVCLYV
Sbjct: 172 EHKVYKLKKALYGLKQAPRAWYSRIETYFLKTGFKKCPYEHTLFTKFEDDGKMLIVCLYV 231

Query: 181 DDLIFIGNDNAMIEKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKK 229
           DDL F GND +M E FK SMMVEF++SDLGKMHYFLGIEVVQ   GIFISQKK
Sbjct: 232 DDLSFTGNDVSMFEDFKESMMVEFDMSDLGKMHYFLGIEVVQSTGGIFISQKK 284

[Close]

BLAST of Cmc07g0198311 vs. ExPASy TrEMBL
Match: A0A6A2Y6A3 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111582pilonHSYRG01307 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 7.4e-93
Identity = 169/233 (72.53%), Postives = 196/233 (84.12%), Query Frame = 0


Query: 1   MDEEIEAIE-----ELTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGV 60
           MD EI AIE     EL DLP G +TI VKWVYKTKLKENGE+DK+KA LVAKGY QEFG+
Sbjct: 80  MDAEIAAIEINDTWELCDLPNGQKTIGVKWVYKTKLKENGEIDKHKARLVAKGYMQEFGI 139

Query: 61  DYKEVFAPVARHDIIRLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKD 120
           DYKEVFAPVARHD IRL++++AAQNSWPIFQLDV+S FLHG+L+E+VFIDQP GY K+ +
Sbjct: 140 DYKEVFAPVARHDTIRLVIAMAAQNSWPIFQLDVKSAFLHGDLKEEVFIDQPPGYEKIGN 199

Query: 121 EHKVYRLKKALYRLNQAPRAWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIVCLYV 180
           EHKVY+LKKALY L QAPRAWY+ I  YF KEGF+KCP+EYTLF K  DG K+ IVCLYV
Sbjct: 200 EHKVYKLKKALYGLKQAPRAWYNRIKTYFLKEGFQKCPHEYTLFIKIEDGGKMFIVCLYV 259

Query: 181 DDLIFIGNDNAMIEKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKK 229
           DDLI+ G++  M E FK+SMM EFE+SDLG MHYFLGIEV+Q ++GIFISQKK
Sbjct: 260 DDLIYTGSNTVMFESFKKSMMAEFEMSDLGMMHYFLGIEVLQSSAGIFISQKK 312

[Close]

BLAST of Cmc07g0198311 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-39
Identity = 86/237 (36.29%), Postives = 143/237 (60.34%), Query Frame = 0


Query: 1   MDEEIEAIE-----ELTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGV 60
           MD+EI A+E     E+  LP   + I  KWVYK K   +G +++YKA LVAKGY Q+ G+
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  DYKEVFAPVARHDIIRLMVSLAAQNSWPIFQLDVESTFLHGELQEKVFIDQPLGYVKVKD 120
           D+ E F+PV +   ++L+++++A  ++ + QLD+ + FL+G+L E++++  P GY   + 
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQG 221

Query: 121 E----HKVYRLKKALYRLNQAPRAWYSHINAYFTKEGFKKCPYEYTLFTKFGDGRKLLIV 180
           +    + V  LKK++Y L QA R W+   +      GF +   ++T F K       L V
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKI-TATLFLCV 281

Query: 181 CLYVDDLIFIGNDNAMIEKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKK 229
            +YVDD+I   N++A +++ K  +   F++ DLG + YFLG+E+ + A+GI I Q+K
Sbjct: 282 LVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRK 337

[Close]

BLAST of Cmc07g0198311 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 62.8 bits (151), Expect = 4.6e-10
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 1   MDEEIEAIEE-----LTDLPKGHQTIRVKWVYKTKLKENGEVDKYKAHLVAKGYKQEFGV 60
           M EE++A+       L   P     +  KWV+KTKL  +G +D+ KA LVAKG+ QE G+
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DYKEVFAPVARHDIIRLMVSLAAQ 80
            + E ++PV R   IR ++++A Q
Sbjct: 104 YFVETYSPVVRTATIRTILNVAQQ 127

[Close]

BLAST of Cmc07g0198311 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-07
Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 169 LIVCLYVDDLIFIGNDNAMIEKFKRSMMVEFEISDLGKMHYFLGIEVVQLASGIFISQKK 228
           + + LYVDD++  G+ N ++      +   F + DLG +HYFLGI++    SG+F+SQ K
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

The following BLAST results are available for this feature:

BLAST of Cmc07g0198311 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW92024.1	2.0e-100	76.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVX00732.1	1.6e-97	75.52	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW34895.1	3.3e-95	75.11	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
KZV47100.1	9.6e-95	74.68	retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Dorcoceras...	[more]
KAE8676825.1	1.5e-92	72.53	hypothetical protein F3Y22_tig00111582pilonHSYRG01307 [Hibiscus syriacus]	[more]

BLAST of Cmc07g0198311 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.1e-40	35.32	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	1.4e-40	37.73	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.4e-40	37.38	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	6.6e-30	32.46	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	5.1e-14	31.62	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc07g0198311 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438I5N6	9.7e-101	76.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438IVG3	7.7e-98	75.52	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438DHD9	1.6e-95	75.11	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A2Z7CJ54	4.7e-95	74.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Dorcoc...	[more]
A0A6A2Y6A3	7.4e-93	72.53	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Hibiscus syria...	[more]

BLAST of Cmc07g0198311 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.2e-39	36.29	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	4.6e-10	39.29	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00810.1	2.1e-07	38.33	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 10..228 e-value: 1.9E-71 score: 240.5
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 13..236
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 11..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0198311.1	Cmc07g0198311.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding