Cmc07g0198171 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0198171
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDEAD-box ATP-dependent RNA helicase 32
LocationCMiso1.1chr07: 21400421 .. 21401693 (+)
RNA-Seq ExpressionCmc07g0198171
SyntenyCmc07g0198171
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTGGAAGCTTGAGGATTTAAAGTGATGAGTTTTTCCATCAAGGATAAGATGATTTTTCAACCTCCATCTGAGTAACCTTGGTAAGCTAATGAAATTAAATTAATATTTTATTAATTTAATTCTGAATCTTTTTGGAGTTTCTTAAAGGGTTCAATTGGCTAAACTTTTTAAGATTTAAATCTTGGATTTTTCCTAATCAAGGTTGAATTGGTTTCAACCCCTTTTGTTTGAGAAGTTAATTAATTTGGGAGAATTTTTGGATGTTAGCCAATTGTTAATTTCATTAATTAAGATACTAAGTTTTTCTTTTATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGTAAGAGATTCTTCTACTAGACCTTCGAACTGAATTTAAGAGACCGCATGTAATTATGATTATGCATTGATGGTAACTAAAATGCATAACTTGATGCTACTGATAATGACTGTCATTGTATTGATGTTGATGATGATGACTGAGATTATTATGTTGATGATTGATGATGATGACTGATGTTATGTTAATGACTGGTAGATTGATGTTGATGATTGTTAATGCATGATATATTAATCACATGATTAAGGACGTTAAGATTAATACCGATGCCATGTTATGATGTTATGTTATGCTACATGCTATGGATAGGGTGTTCTGTTAACTTTGTCTATTAGAGTCGTACCTGCATGGTGTCCTTCGGGATCACCACCTATTTAGGACTGTGTGGTCCGACGGGACGTCGGTCTAGCATGGATATAGATATGATACGAGTGATTCGACGGAGTCCTCGCATCCCGATGTCTTAGTGTTACCCTCGGGTTCACTACAGACCAGCATGTCCTAGGTGCTCCCCCGGGACACCGAAGACCAGATTTTTGTTCCTATGGGAGCGCATGTTACATGTGTTCGGGAACGTGCCAGAGATTGGGTACCATTTACAGGACTCTAATGGGAAGTTAACAGACACCTAGCGGGACTAGTAGTAGGTCCCTTACTGAGTATATGTTTATACTCACTCTTTCTATGTTTAACATTTCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCGTTTTTAATGAAAAATGTAGTTTTCCTCCTTTCAAAAAAAAATGTCTCTTGTCTTTGTTTCTTTTTAGTAATGACCT

mRNA sequence

TCTTTGGAAGCTTGAGGATTTAAAGTGATGAGTTTTTCCATCAAGGATAAGATGATTTTTCAACCTCCATCTGAGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCGTTTTTAATGAAAAATGTAGTTTTCCTCCTTTCAAAAAAAAATGTCTCTTGTCTTTGTTTCTTTTTAGTAATGACCT

Coding sequence (CDS)

ATGAGTTTTTCCATCAAGGATAAGATGATTTTTCAACCTCCATCTGAGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAA

Protein sequence

MSFSIKDKMIFQPPSEIKLIGEFLLSTREYLVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Homology
BLAST of Cmc07g0198171 vs. NCBI nr
Match: KAA0051087.1 (transposase [Cucumis melo var. makuwa] >TYK12105.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 7.7e-13
Identity = 51/110 (46.36%), Postives = 53/110 (48.18%), Query Frame = 0

Query: 16  EIKLIGEFLLSTREYLVWLKS--------------------------------------- 72
           EIKLIGEFLLS REY VWLKS                                       
Sbjct: 724 EIKLIGEFLLSLREYFVWLKSQESYLHGCPSGSLPIQECVVRRNRQSSMDIDMIRVIRRD 783

BLAST of Cmc07g0198171 vs. NCBI nr
Match: KAA0033961.1 (DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa] >TYK02583.1 DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-12
Identity = 50/97 (51.55%), Postives = 51/97 (52.58%), Query Frame = 0

Query: 17 IKLIGEFLLSTREYLVWLKSP--------------------------------------- 72
          IKLIGEFLLSTREYLVWLKSP                                       
Sbjct: 4  IKLIGEFLLSTREYLVWLKSPDQHVLGAPPGHRRPDFRSYGSACCTCSGTCQRLGTIYKT 63

BLAST of Cmc07g0198171 vs. NCBI nr
Match: KAA0045385.1 (hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 5.0e-12
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0

Query: 16 EIKLIGEFLLSTREYLVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 72
          +I +I       R  +V +  PGEGKGRGKLASD+EGSVTCHMGTQFCFRVYV+VF
Sbjct: 2  DINMIRVIRRDPRSLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVAVF 57

BLAST of Cmc07g0198171 vs. NCBI nr
Match: KAA0035872.1 (hypothetical protein E6C27_scaffold56G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 12 QPPSEIKLIGEFLLSTREYLVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 71
          Q   +I +I       R  +V +   GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 4  QSSMDIDMIRVIRRGPRIPIVLVLPRGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 63

BLAST of Cmc07g0198171 vs. NCBI nr
Match: KAA0063966.1 (hypothetical protein E6C27_scaffold616G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-11
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 16 EIKLIGEFLLSTREYLVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 72
          +I +I       R  +V +   GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 2  DIDMIRVIRRGPRIPIVLVLPQGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 57

BLAST of Cmc07g0198171 vs. ExPASy TrEMBL
Match: A0A5D3CKP0 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.7e-13
Identity = 51/110 (46.36%), Postives = 53/110 (48.18%), Query Frame = 0

Query: 16  EIKLIGEFLLSTREYLVWLKS--------------------------------------- 72
           EIKLIGEFLLS REY VWLKS                                       
Sbjct: 724 EIKLIGEFLLSLREYFVWLKSQESYLHGCPSGSLPIQECVVRRNRQSSMDIDMIRVIRRD 783

BLAST of Cmc07g0198171 vs. ExPASy TrEMBL
Match: A0A5A7SWX3 (DEAD-box ATP-dependent RNA helicase 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00360 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.3e-13
Identity = 50/97 (51.55%), Postives = 51/97 (52.58%), Query Frame = 0

Query: 17 IKLIGEFLLSTREYLVWLKSP--------------------------------------- 72
          IKLIGEFLLSTREYLVWLKSP                                       
Sbjct: 4  IKLIGEFLLSTREYLVWLKSPDQHVLGAPPGHRRPDFRSYGSACCTCSGTCQRLGTIYKT 63

BLAST of Cmc07g0198171 vs. ExPASy TrEMBL
Match: A0A5A7TVG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold442G00010 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0

Query: 16 EIKLIGEFLLSTREYLVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 72
          +I +I       R  +V +  PGEGKGRGKLASD+EGSVTCHMGTQFCFRVYV+VF
Sbjct: 2  DINMIRVIRRDPRSLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVAVF 57

BLAST of Cmc07g0198171 vs. ExPASy TrEMBL
Match: A0A5A7SXE7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00360 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.1e-12
Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 12 QPPSEIKLIGEFLLSTREYLVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 71
          Q   +I +I       R  +V +   GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 4  QSSMDIDMIRVIRRGPRIPIVLVLPRGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 63

BLAST of Cmc07g0198171 vs. ExPASy TrEMBL
Match: A0A5A7VC30 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00420 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 12  QPPSEIKLIGEFLLSTREYLVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 71
           Q   +I +I       R  +V +  PGEGKGRGKLASDREG V CHMGTQFCFRVYVSVF
Sbjct: 169 QSSMDIDMIRVIRRGPRIPIVLVLPPGEGKGRGKLASDREGFVACHMGTQFCFRVYVSVF 228

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0051087.17.7e-1346.36transposase [Cucumis melo var. makuwa] >TYK12105.1 transposase [Cucumis melo var... [more]
KAA0033961.11.7e-1251.55DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa] >TYK02583.1 DE... [more]
KAA0045385.15.0e-1266.07hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa][more]
KAA0035872.11.9e-1165.00hypothetical protein E6C27_scaffold56G00360 [Cucumis melo var. makuwa][more]
KAA0063966.13.2e-1167.86hypothetical protein E6C27_scaffold616G001210 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CKP03.7e-1346.36Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE... [more]
A0A5A7SWX38.3e-1351.55DEAD-box ATP-dependent RNA helicase 32 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A5A7TVG72.4e-1266.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SXE79.1e-1265.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VC301.6e-1163.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0198171.1Cmc07g0198171.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0043167 ion binding
molecular_function GO:0003676 nucleic acid binding