Cmc07g0197211 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0197211
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr07: 20461923 .. 20462378 (+)
RNA-Seq Expression	Cmc07g0197211
Synteny	Cmc07g0197211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTATATATCGTACTCTAATGCTACAGGCAGCCTAATGTATCTAATGGTCTGTACTAGGCCAAATCTAGCTCACAGTTCAAGTCTTGTCAGCCGGTATATGGGAAATCCAGGCAAGATTCATTGGGAGGCAACTAAATGGGTTTTCAGGTACCTAGTTGGAACTAAAAATAGGGGGTTTCTTTATAAACCTCCTAATGATTTTAAACTACGAGTAAGAGGCTTTATGGATGCTAATTTTGCTGGAGATTCTAATAAAAGAAGATCACTAACTGGCTTTGTCTTCACTTTGGGAGAAAATCTTATCAGTTGGAAATCAAATTTACAATCAGTAGTTGCCTTATCAACTACTGAAGCAGAATTCGTAGCTGTTTCTGAAGCTATGTGGCTAAGGGGAATAGTCTCAGAACTAGGCTACAAACAAGAAGCTATAGAGCTAATGTGTCACAACTAG

mRNA sequence

ATGAGCTATATATCGTACTCTAATGCTACAGGCAGCCTAATGTATCTAATGGTCTGTACTAGGCCAAATCTAGCTCACAGTTCAAGTCTTGTCAGCCGGTATATGGGAAATCCAGGCAAGATTCATTGGGAGGCAACTAAATGGGTTTTCAGGTACCTAGTTGGAACTAAAAATAGGGGGTTTCTTTATAAACCTCCTAATGATTTTAAACTACGAGTAAGAGGCTTTATGGATGCTAATTTTGCTGGAGATTCTAATAAAAGAAGATCACTAACTGGCTTTGTCTTCACTTTGGGAGAAAATCTTATCAGTTGGAAATCAAATTTACAATCAGTAGTTGCCTTATCAACTACTGAAGCAGAATTCGTAGCTGTTTCTGAAGCTATGTGGCTAAGGGGAATAGTCTCAGAACTAGGCTACAAACAAGAAGCTATAGAGCTAATGTGTCACAACTAG

Coding sequence (CDS)

ATGAGCTATATATCGTACTCTAATGCTACAGGCAGCCTAATGTATCTAATGGTCTGTACTAGGCCAAATCTAGCTCACAGTTCAAGTCTTGTCAGCCGGTATATGGGAAATCCAGGCAAGATTCATTGGGAGGCAACTAAATGGGTTTTCAGGTACCTAGTTGGAACTAAAAATAGGGGGTTTCTTTATAAACCTCCTAATGATTTTAAACTACGAGTAAGAGGCTTTATGGATGCTAATTTTGCTGGAGATTCTAATAAAAGAAGATCACTAACTGGCTTTGTCTTCACTTTGGGAGAAAATCTTATCAGTTGGAAATCAAATTTACAATCAGTAGTTGCCTTATCAACTACTGAAGCAGAATTCGTAGCTGTTTCTGAAGCTATGTGGCTAAGGGGAATAGTCTCAGAACTAGGCTACAAACAAGAAGCTATAGAGCTAATGTGTCACAACTAG

Protein sequence

MSYISYSNATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRGFLYKPPNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEAEFVAVSEAMWLRGIVSELGYKQEAIELMCHN

Homology

[Close]

BLAST of Cmc07g0197211 vs. NCBI nr
Match: KAA0054988.1 (hypothetical protein E6C27_scaffold43052G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 253.8 bits (647), Expect = 9.1e-64
Identity = 128/152 (84.21%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 5   SYSN-ATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRGFLY 64
           +Y+N ATGSLMYLMVCTR +LAHSSSLVSRYMGNP KIHWEATKWVFRYLVGT+NRG LY
Sbjct: 784 TYTNKATGSLMYLMVCTRLDLAHSSSLVSRYMGNPSKIHWEATKWVFRYLVGTENRGLLY 843

Query: 65  KPPNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEAEFV 124
           KPP D KLRVRGF+DA+FAGD  KRRSLTGF FTLGENLISWKSNLQSVVALSTTEA+F+
Sbjct: 844 KPPKDSKLRVRGFVDADFAGDPYKRRSLTGFAFTLGENLISWKSNLQSVVALSTTEAKFI 903

Query: 125 ----AVSEAMWLRGIVSELGYKQEAIELMCHN 152
               AV EAMWLRGIVSELGY+QEAIELMC N
Sbjct: 904 VVSEAVKEAMWLRGIVSELGYQQEAIELMCDN 935

[Close]

BLAST of Cmc07g0197211 vs. NCBI nr
Match: KAA0039651.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYJ95535.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 221.1 bits (562), Expect = 6.5e-54
Identity = 112/151 (74.17%), Postives = 119/151 (78.81%), Query Frame = 0


Query: 1   MSYISYSNATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRG 60
           MSY+ YSNATGSLMYLMVCTRP+LAHSSSLVSRYMGN GKIHWEATKWVFRYLVGT+NRG
Sbjct: 566 MSYVPYSNATGSLMYLMVCTRPDLAHSSSLVSRYMGNSGKIHWEATKWVFRYLVGTENRG 625

Query: 61  FLYKPPNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEA 120
            LYK PND KLRVRGFMD +FAGD +KRRSLTG  FTLGENLI+                
Sbjct: 626 LLYKSPNDSKLRVRGFMDTDFAGDPDKRRSLTGVAFTLGENLIT---------------- 685

Query: 121 EFVAVSEAMWLRGIVSELGYKQEAIELMCHN 152
               V +AMWLR IVSELGYKQEAIELMC N
Sbjct: 686 ----VKKAMWLRRIVSELGYKQEAIELMCDN 696

[Close]

BLAST of Cmc07g0197211 vs. NCBI nr
Match: KAA0046926.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 4.1e-48
Identity = 97/155 (62.58%), Postives = 120/155 (77.42%), Query Frame = 0


Query: 1   MSYISYSNATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRG 60
           M  I YSNATGSLMYL+VCTRP+LAH SS+VSRYMGNPG+ HWEATKWVF YL G  NRG
Sbjct: 32  MESIPYSNATGSLMYLIVCTRPDLAHYSSIVSRYMGNPGRAHWEATKWVFLYLKGLSNRG 91

Query: 61  FLYKPPNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEA 120
            LYK     +L + G++D+++AGD +KRRSL GF F LG N+ISWKSNLQ VV LST EA
Sbjct: 92  LLYKHLKSIELNLYGYVDSDYAGDLDKRRSLIGFTFVLGGNVISWKSNLQPVVTLSTLEA 151

Query: 121 EFVAVSEA----MWLRGIVSELGYKQEAIELMCHN 152
           E +A++EA    +WL+GI+ ELG+ Q +I + CH+
Sbjct: 152 ESIAMTEAVKETIWLKGILEELGFYQRSINITCHS 186

[Close]

BLAST of Cmc07g0197211 vs. NCBI nr
Match: TYK03226.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 4.1e-48
Identity = 97/155 (62.58%), Postives = 120/155 (77.42%), Query Frame = 0


Query: 1   MSYISYSNATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRG 60
           M  I YSNATGSLMYL+VCTRP+LAH SS+VSRYMGNPG+ HWEATKWVF YL G  NRG
Sbjct: 32  MESIPYSNATGSLMYLIVCTRPDLAHYSSIVSRYMGNPGRAHWEATKWVFLYLKGLSNRG 91

Query: 61  FLYKPPNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEA 120
            LYK     +L + G++D+++AGD +KRRSL GF F LG N+ISWKSNLQ VV LST EA
Sbjct: 92  LLYKHLKSIELNLYGYVDSDYAGDLDKRRSLIGFTFVLGGNVISWKSNLQPVVTLSTLEA 151

Query: 121 EFVAVSEA----MWLRGIVSELGYKQEAIELMCHN 152
           E +A++EA    +WL+GI+ ELG+ Q +I + CH+
Sbjct: 152 ESIAMTEAVKETIWLKGILEELGFYQRSINITCHS 186

[Close]

BLAST of Cmc07g0197211 vs. NCBI nr
Match: KAA0060284.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYK22034.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.7e-46
Identity = 96/136 (70.59%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 20  TRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRGFLYKPPNDFKLRVRGFMDA 79
           T     + +  + R +   GKIHWEATKWVFRYLVG +N+G LYKPPN  KLRV GF+DA
Sbjct: 521 THKTYTNKARFIGRQLNGFGKIHWEATKWVFRYLVGIENKGLLYKPPNGSKLRVSGFVDA 580

Query: 80  NFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEAEFV----AVSEAMWLRGIV 139
           +FAGD +KRRSLT F FTLGE+LISWKSNLQSVV++STTEAEF+    AV EAMWLRGIV
Sbjct: 581 DFAGDPHKRRSLTDFAFTLGESLISWKSNLQSVVSISTTEAEFIVVSEAVKEAMWLRGIV 640

Query: 140 SELGYKQEAIELMCHN 152
           SELGYKQEAIELMC N
Sbjct: 641 SELGYKQEAIELMCDN 656

[Close]

BLAST of Cmc07g0197211 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-33
Identity = 71/153 (46.41%), Postives = 100/153 (65.36%), Query Frame = 0


Query: 1    MSYISYSNATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRG 60
            M+ + YS+A GSLMY MVCTRP++AH+  +VSR++ NPGK HWEA KW+ RYL GT    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   FLYKPPNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEA 120
              +   +     ++G+ DA+ AGD + R+S TG++FT     ISW+S LQ  VALSTTEA
Sbjct: 1166 LCFGGSDPI---LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEA 1225

Query: 121  EFVAVSEA----MWLRGIVSELGYKQEAIELMC 150
            E++A +E     +WL+  + ELG  Q+   + C
Sbjct: 1226 EYIAATETGKEMIWLKRFLQELGLHQKEYVVYC 1255

[Close]

BLAST of Cmc07g0197211 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.3e-22
Identity = 57/135 (42.22%), Postives = 84/135 (62.22%), Query Frame = 0


Query: 1   MSYISYSNATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRG 60
           M  + Y +A G++MYLMV TRP+LA +  ++S++  +P   HW+A K V RYL  T+  G
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  FLYKPPNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEA 120
             +      KL   G+ DA++AGD   RRS +G++F L    +SW+S  Q  VALS+TE 
Sbjct: 61  LEFTRAGTAKL--VGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTED 120

Query: 121 EFVAVS----EAMWL 132
           E++A+S    EA+WL
Sbjct: 121 EYMALSEATQEAVWL 133

[Close]

BLAST of Cmc07g0197211 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-20
Identity = 53/138 (38.41%), Postives = 86/138 (62.32%), Query Frame = 0


Query: 11   GSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRGFLYKPPNDFK 70
            G LMY+M+CTRP+L  + +++SRY        W+  K V RYL GT +   ++K    F+
Sbjct: 1186 GCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFE 1245

Query: 71   LRVRGFMDANFAGDSNKRRSLTGFVFTLGE-NLISWKSNLQSVVALSTTEAE----FVAV 130
             ++ G++D+++AG    R+S TG++F + + NLI W +  Q+ VA S+TEAE    F AV
Sbjct: 1246 NKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAV 1305

Query: 131  SEAMWLRGIVSELGYKQE 144
             EA+WL+ +++ +  K E
Sbjct: 1306 REALWLKFLLTSINIKLE 1323

[Close]

BLAST of Cmc07g0197211 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-18
Identity = 55/138 (39.86%), Postives = 79/138 (57.25%), Query Frame = 0


Query: 6    YSNATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRGFLYKP 65
            Y    GSL YL   TRP+L+++ + +S+YM  P   HW A K V RYL GT + G   K 
Sbjct: 1228 YRGIVGSLQYL-AFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   PNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEAEFVAV 125
             N   L +  + DA++AGD++   S  G++  LG + ISW S  Q  V  S+TEAE+ +V
Sbjct: 1288 GN--TLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSV 1347

Query: 126  ----SEAMWLRGIVSELG 140
                SE  W+  +++ELG
Sbjct: 1348 ANTSSELQWICSLLTELG 1362

[Close]

BLAST of Cmc07g0197211 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-13
Identity = 46/121 (38.02%), Postives = 74/121 (61.16%), Query Frame = 0


Query: 6   YSNATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRGFLYKP 65
           + +  G+L YL + TRP+++++ ++V + M  P    ++  K V RY+ GT   G LY  
Sbjct: 100 FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHG-LYIH 159

Query: 66  PNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEAEFVAV 125
            N  KL V+ F D+++AG ++ RRS TGF   LG N+ISW +  Q  V+ S+TE E+ A+
Sbjct: 160 KNS-KLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRAL 217

Query: 126 S 127
           +
Sbjct: 220 A 217

[Close]

BLAST of Cmc07g0197211 vs. ExPASy TrEMBL
Match: A0A5A7UJ23 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001360 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.4e-64
Identity = 128/152 (84.21%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 5   SYSN-ATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRGFLY 64
           +Y+N ATGSLMYLMVCTR +LAHSSSLVSRYMGNP KIHWEATKWVFRYLVGT+NRG LY
Sbjct: 784 TYTNKATGSLMYLMVCTRLDLAHSSSLVSRYMGNPSKIHWEATKWVFRYLVGTENRGLLY 843

Query: 65  KPPNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEAEFV 124
           KPP D KLRVRGF+DA+FAGD  KRRSLTGF FTLGENLISWKSNLQSVVALSTTEA+F+
Sbjct: 844 KPPKDSKLRVRGFVDADFAGDPYKRRSLTGFAFTLGENLISWKSNLQSVVALSTTEAKFI 903

Query: 125 ----AVSEAMWLRGIVSELGYKQEAIELMCHN 152
               AV EAMWLRGIVSELGY+QEAIELMC N
Sbjct: 904 VVSEAVKEAMWLRGIVSELGYQQEAIELMCDN 935

[Close]

BLAST of Cmc07g0197211 vs. ExPASy TrEMBL
Match: A0A5D3BAM8 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00260 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.2e-54
Identity = 112/151 (74.17%), Postives = 119/151 (78.81%), Query Frame = 0


Query: 1   MSYISYSNATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRG 60
           MSY+ YSNATGSLMYLMVCTRP+LAHSSSLVSRYMGN GKIHWEATKWVFRYLVGT+NRG
Sbjct: 566 MSYVPYSNATGSLMYLMVCTRPDLAHSSSLVSRYMGNSGKIHWEATKWVFRYLVGTENRG 625

Query: 61  FLYKPPNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEA 120
            LYK PND KLRVRGFMD +FAGD +KRRSLTG  FTLGENLI+                
Sbjct: 626 LLYKSPNDSKLRVRGFMDTDFAGDPDKRRSLTGVAFTLGENLIT---------------- 685

Query: 121 EFVAVSEAMWLRGIVSELGYKQEAIELMCHN 152
               V +AMWLR IVSELGYKQEAIELMC N
Sbjct: 686 ----VKKAMWLRRIVSELGYKQEAIELMCDN 696

[Close]

BLAST of Cmc07g0197211 vs. ExPASy TrEMBL
Match: A0A5D3BYG1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00390 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.0e-48
Identity = 97/155 (62.58%), Postives = 120/155 (77.42%), Query Frame = 0


Query: 1   MSYISYSNATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRG 60
           M  I YSNATGSLMYL+VCTRP+LAH SS+VSRYMGNPG+ HWEATKWVF YL G  NRG
Sbjct: 32  MESIPYSNATGSLMYLIVCTRPDLAHYSSIVSRYMGNPGRAHWEATKWVFLYLKGLSNRG 91

Query: 61  FLYKPPNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEA 120
            LYK     +L + G++D+++AGD +KRRSL GF F LG N+ISWKSNLQ VV LST EA
Sbjct: 92  LLYKHLKSIELNLYGYVDSDYAGDLDKRRSLIGFTFVLGGNVISWKSNLQPVVTLSTLEA 151

Query: 121 EFVAVSEA----MWLRGIVSELGYKQEAIELMCHN 152
           E +A++EA    +WL+GI+ ELG+ Q +I + CH+
Sbjct: 152 ESIAMTEAVKETIWLKGILEELGFYQRSINITCHS 186

[Close]

BLAST of Cmc07g0197211 vs. ExPASy TrEMBL
Match: A0A5A7TY71 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00940 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.0e-48
Identity = 97/155 (62.58%), Postives = 120/155 (77.42%), Query Frame = 0


Query: 1   MSYISYSNATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRG 60
           M  I YSNATGSLMYL+VCTRP+LAH SS+VSRYMGNPG+ HWEATKWVF YL G  NRG
Sbjct: 32  MESIPYSNATGSLMYLIVCTRPDLAHYSSIVSRYMGNPGRAHWEATKWVFLYLKGLSNRG 91

Query: 61  FLYKPPNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEA 120
            LYK     +L + G++D+++AGD +KRRSL GF F LG N+ISWKSNLQ VV LST EA
Sbjct: 92  LLYKHLKSIELNLYGYVDSDYAGDLDKRRSLIGFTFVLGGNVISWKSNLQPVVTLSTLEA 151

Query: 121 EFVAVSEA----MWLRGIVSELGYKQEAIELMCHN 152
           E +A++EA    +WL+GI+ ELG+ Q +I + CH+
Sbjct: 152 ESIAMTEAVKETIWLKGILEELGFYQRSINITCHS 186

[Close]

BLAST of Cmc07g0197211 vs. ExPASy TrEMBL
Match: A0A5A7UZ07 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00070 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.4e-47
Identity = 96/136 (70.59%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 20  TRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRGFLYKPPNDFKLRVRGFMDA 79
           T     + +  + R +   GKIHWEATKWVFRYLVG +N+G LYKPPN  KLRV GF+DA
Sbjct: 521 THKTYTNKARFIGRQLNGFGKIHWEATKWVFRYLVGIENKGLLYKPPNGSKLRVSGFVDA 580

Query: 80  NFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEAEFV----AVSEAMWLRGIV 139
           +FAGD +KRRSLT F FTLGE+LISWKSNLQSVV++STTEAEF+    AV EAMWLRGIV
Sbjct: 581 DFAGDPHKRRSLTDFAFTLGESLISWKSNLQSVVSISTTEAEFIVVSEAVKEAMWLRGIV 640

Query: 140 SELGYKQEAIELMCHN 152
           SELGYKQEAIELMC N
Sbjct: 641 SELGYKQEAIELMCDN 656

[Close]

BLAST of Cmc07g0197211 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-16
Identity = 50/138 (36.23%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 5   SYSNATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRGFLYK 64
           +Y    G LMYL + TR +++ + + +S++   P   H +A   +  Y+ GT  +G  Y 
Sbjct: 377 AYRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYS 436

Query: 65  PPNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEAEFVA 124
              + +L+V  F DA+F    + RRS  G+   LG +LISWKS  Q VV+ S+ EAE+ A
Sbjct: 437 SQAEMQLQV--FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRA 496

Query: 125 VS----EAMWLRGIVSEL 139
           +S    E MWL     EL
Sbjct: 497 LSFATDEMMWLAQFFREL 511

[Close]

BLAST of Cmc07g0197211 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-14
Identity = 46/121 (38.02%), Postives = 74/121 (61.16%), Query Frame = 0


Query: 6   YSNATGSLMYLMVCTRPNLAHSSSLVSRYMGNPGKIHWEATKWVFRYLVGTKNRGFLYKP 65
           + +  G+L YL + TRP+++++ ++V + M  P    ++  K V RY+ GT   G LY  
Sbjct: 100 FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHG-LYIH 159

Query: 66  PNDFKLRVRGFMDANFAGDSNKRRSLTGFVFTLGENLISWKSNLQSVVALSTTEAEFVAV 125
            N  KL V+ F D+++AG ++ RRS TGF   LG N+ISW +  Q  V+ S+TE E+ A+
Sbjct: 160 KNS-KLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRAL 217

Query: 126 S 127
           +
Sbjct: 220 A 217

The following BLAST results are available for this feature:

BLAST of Cmc07g0197211 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054988.1	9.1e-64	84.21	hypothetical protein E6C27_scaffold43052G001360 [Cucumis melo var. makuwa]	[more]
KAA0039651.1	6.5e-54	74.17	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]...	[more]
KAA0046926.1	4.1e-48	62.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK03226.1	4.1e-48	62.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0060284.1	1.7e-46	70.59	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]...	[more]

BLAST of Cmc07g0197211 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.0e-33	46.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	5.3e-22	42.22	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	2.2e-20	38.41	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.2e-18	39.86	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92519	4.5e-13	38.02	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc07g0197211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJ23	4.4e-64	84.21	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BAM8	3.2e-54	74.17	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5D3BYG1	2.0e-48	62.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TY71	2.0e-48	62.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UZ07	8.4e-47	70.59	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]

BLAST of Cmc07g0197211 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.8e-16	36.23	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	3.2e-14	38.02	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 11..98
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 11..98
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 74..151 e-value: 2.63989E-34 score: 114.873

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0197211.1	Cmc07g0197211.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0008270	zinc ion binding