Cmc07g0196541 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0196541
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Photosystem II reaction center protein H
Location	CMiso1.1chr07: 19703155 .. 19703376 (-)
RNA-Seq Expression	Cmc07g0196541
Synteny	Cmc07g0196541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACACAAACCGTTGACGATAGTTCTAGATCTGGGCCAAGACGAACTGTTGTAGGGGATTTATTGAAACCATTGAATTCGGAATATGGTAAAGTGGCTCCTGGGTGGGGAACTACACCTTTAATGGGTGTCGCGATGGGTTTATTTGCGATATTCCTATGTATTATTTTGGAGATTTATAATTCTTCCATTTTACTGGACGGAATTTCAAGCAATTAG

mRNA sequence

ATGGCTACACAAACCGTTGACGATAGTTCTAGATCTGGGCCAAGACGAACTGTTGTAGGGGATTTATTGAAACCATTGAATTCGGAATATGGTAAAGTGGCTCCTGGGTGGGGAACTACACCTTTAATGGGTGTCGCGATGGGTTTATTTGCGATATTCCTATGTATTATTTTGGAGATTTATAATTCTTCCATTTTACTGGACGGAATTTCAAGCAATTAG

Coding sequence (CDS)

ATGGCTACACAAACCGTTGACGATAGTTCTAGATCTGGGCCAAGACGAACTGTTGTAGGGGATTTATTGAAACCATTGAATTCGGAATATGGTAAAGTGGCTCCTGGGTGGGGAACTACACCTTTAATGGGTGTCGCGATGGGTTTATTTGCGATATTCCTATGTATTATTTTGGAGATTTATAATTCTTCCATTTTACTGGACGGAATTTCAAGCAATTAG

Protein sequence

MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEIYNSSILLDGISSN

Homology

[Close]

BLAST of Cmc07g0196541 vs. NCBI nr
Match: YP_004841812.1 (photosystem II phosphoprotein [Cucumis melo subsp. melo] >YP_009860102.1 photosystem II phosphoprotein [Cucumis melo subsp. agrestis] >ASY96598.1 photosystem II protein H [Cucumis melo var. conomon] >ASY96685.1 photosystem II protein H [Cucumis melo var. makuwa] >ASY96772.1 photosystem II protein H [Cucumis melo var. momordica] >ASY96859.1 photosystem II protein H [Cucumis melo var. dudaim] >ASY96946.1 photosystem II protein H [Cucumis melo var. cantalupo] >ASY97120.1 photosystem II protein H [Cucumis melo var. inodorus] >ASY97294.1 photosystem II protein H [Cucumis melo var. flexuosus] >QJF46413.1 photosystem II protein H [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 7.6e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI
Sbjct: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSSILLDGISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of Cmc07g0196541 vs. NCBI nr
Match: YP_009326018.1 (photosystem II protein H [Citrullus lanatus] >YP_009348060.1 photosystem II protein H [Citrullus mucosospermus] >YP_009420823.1 photosystem II protein H [Citrullus colocynthis] >YP_009431585.1 photosystem II protein H [Citrullus amarus] >YP_009431671.1 photosystem II protein H [Citrullus rehmii] >YP_009456175.1 photosystem II protein H [Lagenaria siceraria] >YP_010131123.1 photosystem II phosphoprotein [Benincasa hispida] >APW82491.1 photosystem II protein H [Citrullus lanatus subsp. vulgaris] >QNM38560.1 photosystem II phosphoprotein [Lagenaria siceraria var. microcarpa] >QZL38622.1 photosystem II subunit H [Citrullus naudinianus] >QZL38710.1 photosystem II subunit H [Citrullus ecirrhosus] >AHM88720.1 photosystem II phosphoprotein [Lagenaria siceraria])

HSP 1 Score: 146.4 bits (368), Expect = 9.9e-32
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTVDDSSRSGPRRT+VGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI
Sbjct: 1  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSSILLDGISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of Cmc07g0196541 vs. NCBI nr
Match: QHB75993.1 (photosystem II protein H [Cucumis melo subsp. melo])

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTVDDSS+SGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI
Sbjct: 1  MATQTVDDSSKSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSSILLDGISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of Cmc07g0196541 vs. NCBI nr
Match: YP_009346513.1 (photosystem II phosphoprotein [Cucumis x hytivus] >AOW71124.1 photosystem II phosphoprotein [Cucumis x hytivus] >QCY72871.1 PsbH [Cucumis hystrix])

HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLF IFLCIILEI
Sbjct: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFTIFLCIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSSILLDGISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of Cmc07g0196541 vs. NCBI nr
Match: AHM91195.1 (photosystem II phosphoprotein [Lagenaria siceraria])

HSP 1 Score: 144.4 bits (363), Expect = 3.8e-31
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          M TQTVDDSSRSGPRRT+VGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI
Sbjct: 1  MXTQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSSILLDGISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of Cmc07g0196541 vs. ExPASy Swiss-Prot
Match: Q4VZI9 (Photosystem II reaction center protein H OS=Cucumis sativus OX=3659 GN=psbH PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTVDDSS+SGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAM LFAIFLCIILEI
Sbjct: 1  MATQTVDDSSKSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMSLFAIFLCIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSSILLDGISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of Cmc07g0196541 vs. ExPASy Swiss-Prot
Match: Q2PMQ6 (Photosystem II reaction center protein H OS=Glycine max OX=3847 GN=psbH PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-31
Identity = 68/73 (93.15%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTV+D+SRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAM LFAIFL IILEI
Sbjct: 1  MATQTVEDNSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAIFLSIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSSILLDGIS N
Sbjct: 61 YNSSILLDGISMN 73

[Close]

BLAST of Cmc07g0196541 vs. ExPASy Swiss-Prot
Match: Q49KW9 (Photosystem II reaction center protein H OS=Eucalyptus globulus subsp. globulus OX=71271 GN=psbH PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-30
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTV+ SSRSGPRRT+VGDLLKPLNSEYGKVAPGWGTTPLMGVAM LFA+FL IILEI
Sbjct: 1  MATQTVEGSSRSGPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSS+LLDGIS N
Sbjct: 61 YNSSVLLDGISMN 73

[Close]

BLAST of Cmc07g0196541 vs. ExPASy Swiss-Prot
Match: Q7FNS3 (Photosystem II reaction center protein H OS=Atropa belladonna OX=33113 GN=psbH PE=3 SV=3)

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-30
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTV++SSRSGPRRT VGDLLKPLNSEYGKVAPGWGTTPLMGVAM LFA+FL IILEI
Sbjct: 1  MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSS+LLDGIS N
Sbjct: 61 YNSSVLLDGISMN 73

[Close]

BLAST of Cmc07g0196541 vs. ExPASy Swiss-Prot
Match: Q3C1M6 (Photosystem II reaction center protein H OS=Nicotiana sylvestris OX=4096 GN=psbH PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-30
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTV++SSRSGPRRT VGDLLKPLNSEYGKVAPGWGTTPLMGVAM LFA+FL IILEI
Sbjct: 1  MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSS+LLDGIS N
Sbjct: 61 YNSSVLLDGISMN 73

[Close]

BLAST of Cmc07g0196541 vs. ExPASy TrEMBL
Match: A0A1S4EU35 (Photosystem II reaction center protein H OS=Cucumis melo OX=3656 GN=psbH PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.7e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI
Sbjct: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSSILLDGISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of Cmc07g0196541 vs. ExPASy TrEMBL
Match: A0A249RZ75 (Photosystem II reaction center protein H OS=Cucumis melo var. cantalupensis OX=3658 GN=psbH PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.7e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI
Sbjct: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSSILLDGISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of Cmc07g0196541 vs. ExPASy TrEMBL
Match: A0A286NFZ2 (Photosystem II reaction center protein H OS=Cucumis melo var. flexuosus OX=1120798 GN=psbH PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.7e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI
Sbjct: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSSILLDGISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of Cmc07g0196541 vs. ExPASy TrEMBL
Match: A0A249RXR3 (Photosystem II reaction center protein H OS=Cucumis melo subsp. agrestis OX=217619 GN=psbH PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.7e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI
Sbjct: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSSILLDGISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of Cmc07g0196541 vs. ExPASy TrEMBL
Match: A0A249RZ09 (Photosystem II reaction center protein H OS=Cucumis melo var. dudaim OX=2034236 GN=psbH PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.7e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI
Sbjct: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSSILLDGISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of Cmc07g0196541 vs. TAIR 10
Match: ATCG00710.1 (photosystem II reaction center protein H )

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-30
Identity = 64/73 (87.67%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60
          MATQTV+DSSRSGPR T VG LLKPLNSEYGKVAPGWGTTPLMGVAM LFA+FL IILEI
Sbjct: 1  MATQTVEDSSRSGPRSTTVGKLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEI 60

Query: 61 YNSSILLDGISSN 74
          YNSS+LLDGIS N
Sbjct: 61 YNSSVLLDGISVN 73

The following BLAST results are available for this feature:

BLAST of Cmc07g0196541 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004841812.1	7.6e-32	100.00	photosystem II phosphoprotein [Cucumis melo subsp. melo] >YP_009860102.1 photosy...	[more]
YP_009326018.1	9.9e-32	98.63	photosystem II protein H [Citrullus lanatus] >YP_009348060.1 photosystem II prot...	[more]
QHB75993.1	1.7e-31	98.63	photosystem II protein H [Cucumis melo subsp. melo]	[more]
YP_009346513.1	2.2e-31	98.63	photosystem II phosphoprotein [Cucumis x hytivus] >AOW71124.1 photosystem II pho...	[more]
AHM91195.1	3.8e-31	97.26	photosystem II phosphoprotein [Lagenaria siceraria]	[more]

BLAST of Cmc07g0196541 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZI9	1.1e-33	97.26	Photosystem II reaction center protein H OS=Cucumis sativus OX=3659 GN=psbH PE=3...	[more]
Q2PMQ6	1.8e-31	93.15	Photosystem II reaction center protein H OS=Glycine max OX=3847 GN=psbH PE=3 SV=...	[more]
Q49KW9	1.1e-30	89.04	Photosystem II reaction center protein H OS=Eucalyptus globulus subsp. globulus ...	[more]
Q7FNS3	1.5e-30	89.04	Photosystem II reaction center protein H OS=Atropa belladonna OX=33113 GN=psbH P...	[more]
Q3C1M6	1.5e-30	89.04	Photosystem II reaction center protein H OS=Nicotiana sylvestris OX=4096 GN=psbH...	[more]

BLAST of Cmc07g0196541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4EU35	3.7e-32	100.00	Photosystem II reaction center protein H OS=Cucumis melo OX=3656 GN=psbH PE=3 SV...	[more]
A0A249RZ75	3.7e-32	100.00	Photosystem II reaction center protein H OS=Cucumis melo var. cantalupensis OX=3...	[more]
A0A286NFZ2	3.7e-32	100.00	Photosystem II reaction center protein H OS=Cucumis melo var. flexuosus OX=11207...	[more]
A0A249RXR3	3.7e-32	100.00	Photosystem II reaction center protein H OS=Cucumis melo subsp. agrestis OX=2176...	[more]
A0A249RZ09	3.7e-32	100.00	Photosystem II reaction center protein H OS=Cucumis melo var. dudaim OX=2034236 ...	[more]

BLAST of Cmc07g0196541 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00710.1	1.2e-30	87.67	photosystem II reaction center protein H	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001056	Photosystem II reaction centre protein H	PFAM	PF00737	PsbH	coord: 16..67 e-value: 2.0E-32 score: 110.6
IPR001056	Photosystem II reaction centre protein H	PANTHER	PTHR34469	PHOTOSYSTEM II REACTION CENTER PROTEIN H	coord: 1..72
IPR001056	Photosystem II reaction centre protein H	HAMAP	MF_00752	PSII_PsbH	coord: 13..73 score: 21.638142
IPR036863	Photosystem II reaction centre protein H superfamily	GENE3D	1.20.5.880	Photosystem II reaction center protein H	coord: 1..64 e-value: 1.9E-39 score: 135.2
IPR036863	Photosystem II reaction centre protein H superfamily	SUPERFAMILY	161025	Photosystem II 10 kDa phosphoprotein PsbH	coord: 14..72
None	No IPR available	PANTHER	PTHR34469:SF4	PHOTOSYSTEM II REACTION CENTER PROTEIN H	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0196541.1	Cmc07g0196541.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0050821	protein stabilization
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0042301	phosphate ion binding