Cmc07g0196431 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0196431
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	30S ribosomal protein S3, chloroplastic
Location	CMiso1.1chr07: 19694544 .. 19695050 (+)
RNA-Seq Expression	Cmc07g0196431
Synteny	Cmc07g0196431

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATATTTTCTGGTGTTGAAGGAATTGCACGTATCGAGATTCAAAAAAGAATTGATCTTATTCAAGTGATAATCTTTATGGGATTCCCAAAGTTATTAATAGAAGGTGGGTCTCGAAAAATCGAAGAATTACAGATGAATGTACAAAAAGAATTAAATTCTGGGAACCGAAAACTTAACATTGCTATTACAAGAATAGGAAACCCTTATGGACACCCTAATATTCTCGCAGAATTTATAGCCGGACAATTAAAGAATAGAGTTTCATTTCGCAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGACGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGGTATTAGGCATCAAAATTTGGATATTTGTAGACGAGCAATAA

mRNA sequence

ATGAGAATATTTTCTGGTGTTGAAGGAATTGCACGTATCGAGATTCAAAAAAGAATTGATCTTATTCAAGTGATAATCTTTATGGGATTCCCAAAGTTATTAATAGAAGGTGGGTCTCGAAAAATCGAAGAATTACAGATGAATGTACAAAAAGAATTAAATTCTGGGAACCGAAAACTTAACATTGCTATTACAAGAATAGGAAACCCTTATGGACACCCTAATATTCTCGCAGAATTTATAGCCGGACAATTAAAGAATAGAGTTTCATTTCGCAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGACGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGGTATTAGGCATCAAAATTTGGATATTTGTAGACGAGCAATAA

Coding sequence (CDS)

ATGAGAATATTTTCTGGTGTTGAAGGAATTGCACGTATCGAGATTCAAAAAAGAATTGATCTTATTCAAGTGATAATCTTTATGGGATTCCCAAAGTTATTAATAGAAGGTGGGTCTCGAAAAATCGAAGAATTACAGATGAATGTACAAAAAGAATTAAATTCTGGGAACCGAAAACTTAACATTGCTATTACAAGAATAGGAAACCCTTATGGACACCCTAATATTCTCGCAGAATTTATAGCCGGACAATTAAAGAATAGAGTTTCATTTCGCAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGACGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGGTATTAGGCATCAAAATTTGGATATTTGTAGACGAGCAATAA

Protein sequence

MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ

Homology

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BLAST of Cmc07g0196431 vs. NCBI nr
Match: AHM88937.1 (ribosomal protein S3 [Lagenaria siceraria])

HSP 1 Score: 332.8 bits (852), Expect = 1.7e-87
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 60
           MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL
Sbjct: 51  MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 110

Query: 61  NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 120
           NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG
Sbjct: 111 NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 170

Query: 121 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]

BLAST of Cmc07g0196431 vs. NCBI nr
Match: YP_009317424.1 (ribosomal protein S3 [Coccinia grandis] >AOX48751.1 ribosomal protein S3 [Coccinia grandis] >AOX48836.1 ribosomal protein S3 [Coccinia grandis])

HSP 1 Score: 332.8 bits (852), Expect = 1.7e-87
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 60
           MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL
Sbjct: 51  MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 110

Query: 61  NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 120
           NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG
Sbjct: 111 NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 170

Query: 121 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]

BLAST of Cmc07g0196431 vs. NCBI nr
Match: YP_004841822.1 (ribosomal protein S3 [Cucumis melo subsp. melo] >YP_009860112.1 ribosomal protein S3 [Cucumis melo subsp. agrestis] >ASY96586.1 ribosomal protein S3 [Cucumis melo var. conomon] >ASY96673.1 ribosomal protein S3 [Cucumis melo var. makuwa] >ASY96760.1 ribosomal protein S3 [Cucumis melo var. momordica] >ASY96847.1 ribosomal protein S3 [Cucumis melo var. dudaim] >ASY96934.1 ribosomal protein S3 [Cucumis melo var. cantalupo] >ASY97108.1 ribosomal protein S3 [Cucumis melo var. inodorus] >ASY97282.1 ribosomal protein S3 [Cucumis melo var. flexuosus] >QJF46423.1 ribosomal protein S3 [Cucumis melo])

HSP 1 Score: 332.8 bits (852), Expect = 1.7e-87
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 60
           MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL
Sbjct: 51  MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 110

Query: 61  NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 120
           NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG
Sbjct: 111 NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 170

Query: 121 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]

BLAST of Cmc07g0196431 vs. NCBI nr
Match: YP_009456184.1 (ribosomal protein S3 [Lagenaria siceraria] >YP_010131132.1 ribosomal protein S3 [Benincasa hispida] >QNM38569.1 ribosomal protein S3 [Lagenaria siceraria var. microcarpa] >AHM88705.1 ribosomal protein S3 [Lagenaria siceraria] >AHM88995.1 ribosomal protein S3 [Lagenaria siceraria] >AHM89054.1 ribosomal protein S3 [Lagenaria siceraria] >AHM89113.1 ribosomal protein S3 [Lagenaria siceraria])

HSP 1 Score: 332.8 bits (852), Expect = 1.7e-87
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 60
           MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL
Sbjct: 51  MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 110

Query: 61  NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 120
           NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG
Sbjct: 111 NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 170

Query: 121 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]

BLAST of Cmc07g0196431 vs. NCBI nr
Match: YP_009326028.1 (ribosomal protein S3 [Citrullus lanatus] >YP_009348070.1 ribosomal protein S3 [Citrullus mucosospermus] >YP_009420833.1 ribosomal protein S3 [Citrullus colocynthis] >YP_009431595.1 ribosomal protein S3 [Citrullus amarus] >YP_009431681.1 ribosomal protein S3 [Citrullus rehmii] >APW82501.1 ribosomal protein S3 [Citrullus lanatus subsp. vulgaris] >QZL38720.1 ribosomal protein S3 [Citrullus ecirrhosus] >APD52519.1 ribosomal protein S3 [Citrullus lanatus] >APW82586.1 ribosomal protein S3 [Citrullus lanatus subsp. vulgaris] >APW82671.1 ribosomal protein S3 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 332.4 bits (851), Expect = 2.2e-87
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 60
           MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL
Sbjct: 51  MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 110

Query: 61  NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 120
           NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQ+QIAGRIDG
Sbjct: 111 NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQIQIAGRIDG 170

Query: 121 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]

BLAST of Cmc07g0196431 vs. ExPASy Swiss-Prot
Match: Q4VZN0 (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus OX=3659 GN=rps3 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 8.0e-88
Identity = 162/168 (96.43%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 60
           MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKL+I+ GSRKIEELQ+NVQKE NSGNRKL
Sbjct: 51  MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLVIDDGSRKIEELQINVQKEFNSGNRKL 110

Query: 61  NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 120
           NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG
Sbjct: 111 NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 170

Query: 121 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYG+LGIKIWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGILGIKIWIFVDEQ 218

[Close]

BLAST of Cmc07g0196431 vs. ExPASy Swiss-Prot
Match: Q0ZIY0 (30S ribosomal protein S3, chloroplastic OS=Vitis vinifera OX=29760 GN=rps3 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 4.0e-79
Identity = 151/168 (89.88%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1   MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 60
           +RI SGVEGIARIEIQKRIDLIQVII+MGFPKLL+EG  R+IEELQMNVQKELN  NRKL
Sbjct: 51  IRISSGVEGIARIEIQKRIDLIQVIIYMGFPKLLVEGKPRRIEELQMNVQKELNYVNRKL 110

Query: 61  NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 120
           NIAITRI  PYGHPNILAEFIAGQL+NRVSFRKA+KKAIELTEQA TKGIQVQIAGRIDG
Sbjct: 111 NIAITRITKPYGHPNILAEFIAGQLRNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDG 170

Query: 121 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           KEIARVEWIREGRVPLQTIRAKIDYC Y VRTIYGVLGIKIWIFVDE+
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCSYRVRTIYGVLGIKIWIFVDEE 218

[Close]

BLAST of Cmc07g0196431 vs. ExPASy Swiss-Prot
Match: A0ZZ73 (30S ribosomal protein S3, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps3 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 5.2e-79
Identity = 149/167 (89.22%), Postives = 157/167 (94.01%), Query Frame = 0


Query: 2   RIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLN 61
           R+ SGVEGIARIEIQKR+DLIQVII+MGFPKLLIE   RK+EELQMNVQKELN  NRKLN
Sbjct: 52  RLSSGVEGIARIEIQKRLDLIQVIIYMGFPKLLIEDKPRKLEELQMNVQKELNCMNRKLN 111

Query: 62  IAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGK 121
           IAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKGIQ+QIAGRIDGK
Sbjct: 112 IAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGK 171

Query: 122 EIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           EIARVEWIREGRVPLQTI AKI+YC Y VRTIYGVLGIKIWIF+DE+
Sbjct: 172 EIARVEWIREGRVPLQTIGAKIEYCSYRVRTIYGVLGIKIWIFIDEE 218

[Close]

BLAST of Cmc07g0196431 vs. ExPASy Swiss-Prot
Match: Q2L946 (30S ribosomal protein S3, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps3 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 5.2e-79
Identity = 149/167 (89.22%), Postives = 157/167 (94.01%), Query Frame = 0


Query: 2   RIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLN 61
           R+ SGVEGIARIEIQKR+DLIQVII+MGFPKLLIE   RK+EELQMNVQKELN  NRKLN
Sbjct: 52  RLSSGVEGIARIEIQKRLDLIQVIIYMGFPKLLIEDKPRKLEELQMNVQKELNCMNRKLN 111

Query: 62  IAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGK 121
           IAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKGIQ+QIAGRIDGK
Sbjct: 112 IAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGK 171

Query: 122 EIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           EIARVEWIREGRVPLQTI AKI+YC Y VRTIYGVLGIKIWIF+DE+
Sbjct: 172 EIARVEWIREGRVPLQTIGAKIEYCSYRVRTIYGVLGIKIWIFIDEE 218

[Close]

BLAST of Cmc07g0196431 vs. ExPASy Swiss-Prot
Match: A4QJF3 (30S ribosomal protein S3, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rps3 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.9e-79
Identity = 150/168 (89.29%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 60
           +RI SG+EGIARIEIQKRIDLIQVII+MGFPKLLIE   R++EELQMNVQKELN  NRKL
Sbjct: 51  IRISSGMEGIARIEIQKRIDLIQVIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKL 110

Query: 61  NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 120
           NIAITRI  PYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKGIQVQIAGRIDG
Sbjct: 111 NIAITRISTPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDG 170

Query: 121 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           KEIARVEWIREGRVPLQTI AKIDYC Y VRTIYGVLGIKIWIFVDE+
Sbjct: 171 KEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218

[Close]

BLAST of Cmc07g0196431 vs. ExPASy TrEMBL
Match: A0A1S4EU44 (30S ribosomal protein S3, chloroplastic OS=Cucumis melo OX=3656 GN=rps3 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.3e-88
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 60
           MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL
Sbjct: 51  MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 110

Query: 61  NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 120
           NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG
Sbjct: 111 NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 170

Query: 121 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]

BLAST of Cmc07g0196431 vs. ExPASy TrEMBL
Match: A0A249RZG7 (30S ribosomal protein S3, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rps3 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.3e-88
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 60
           MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL
Sbjct: 51  MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 110

Query: 61  NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 120
           NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG
Sbjct: 111 NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 170

Query: 121 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]

BLAST of Cmc07g0196431 vs. ExPASy TrEMBL
Match: A0A2Z2CGI2 (30S ribosomal protein S3, chloroplastic OS=Coccinia grandis OX=387127 GN=rps3 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.3e-88
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 60
           MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL
Sbjct: 51  MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 110

Query: 61  NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 120
           NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG
Sbjct: 111 NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 170

Query: 121 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]

BLAST of Cmc07g0196431 vs. ExPASy TrEMBL
Match: X2EZ87 (30S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps3 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.3e-88
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 60
           MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL
Sbjct: 51  MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 110

Query: 61  NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 120
           NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG
Sbjct: 111 NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 170

Query: 121 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

[Close]

BLAST of Cmc07g0196431 vs. ExPASy TrEMBL
Match: A0A249RXQ1 (30S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=rps3 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.3e-88
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 60
           MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL
Sbjct: 51  MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 110

Query: 61  NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 120
           NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG
Sbjct: 111 NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 170

Query: 121 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ
Sbjct: 171 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 218

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BLAST of Cmc07g0196431 vs. TAIR 10
Match: ATCG00800.1 (structural constituent of ribosome )

HSP 1 Score: 292.7 bits (748), Expect = 1.8e-79
Identity = 149/168 (88.69%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKL 60
           +RI SG+EGIARIEIQKRIDLIQ+II+MGFPKLLIE   R++EELQMNVQKELN  NRKL
Sbjct: 51  IRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKL 110

Query: 61  NIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDG 120
           NIAITRI NPYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKGIQVQIAGRIDG
Sbjct: 111 NIAITRISNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDG 170

Query: 121 KEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWIFVDEQ 169
           KEIARVEWIREGRVPLQTI AKIDYC Y VRTIYGVLGIKIWIFVDE+
Sbjct: 171 KEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218

[Close]

BLAST of Cmc07g0196431 vs. TAIR 10
Match: ATMG00090.1 (structural constituent of ribosome;protein binding )

HSP 1 Score: 52.8 bits (125), Expect = 3.2e-07
Identity = 36/112 (32.14%), Postives = 57/112 (50.89%), Query Frame = 0


Query: 54  NSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKN-RVSFRKAMKKAIELTEQAGTKGIQV 113
           N  N K  I   +I + Y   + +A+ I+ QLKN R SF     K ++   + G +GI++
Sbjct: 429 NRTNTKTLIESVKIKSVYQSASPIAQDISFQLKNKRRSFHSIFAKIVKEIPK-GVEGIRI 488

Query: 114 QIAGRI-DGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGVLGIKIWI 164
             +GR+ D  E A+ +  +  +        KIDY    V T YG+ G+K+WI
Sbjct: 489 CFSGRLKDAAEKAQTKCYKHRKTSRNVFNHKIDYAPAEVSTRYGISGVKVWI 539

The following BLAST results are available for this feature:

BLAST of Cmc07g0196431 vs. NCBI nr


Match Name	E-value	Identity	Description
AHM88937.1	1.7e-87	100.00	ribosomal protein S3 [Lagenaria siceraria]	[more]
YP_009317424.1	1.7e-87	100.00	ribosomal protein S3 [Coccinia grandis] >AOX48751.1 ribosomal protein S3 [Coccin...	[more]
YP_004841822.1	1.7e-87	100.00	ribosomal protein S3 [Cucumis melo subsp. melo] >YP_009860112.1 ribosomal protei...	[more]
YP_009456184.1	1.7e-87	100.00	ribosomal protein S3 [Lagenaria siceraria] >YP_010131132.1 ribosomal protein S3 ...	[more]
YP_009326028.1	2.2e-87	99.40	ribosomal protein S3 [Citrullus lanatus] >YP_009348070.1 ribosomal protein S3 [C...	[more]

BLAST of Cmc07g0196431 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZN0	8.0e-88	96.43	30S ribosomal protein S3, chloroplastic OS=Cucumis sativus OX=3659 GN=rps3 PE=3 ...	[more]
Q0ZIY0	4.0e-79	89.88	30S ribosomal protein S3, chloroplastic OS=Vitis vinifera OX=29760 GN=rps3 PE=3 ...	[more]
A0ZZ73	5.2e-79	89.22	30S ribosomal protein S3, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps3 ...	[more]
Q2L946	5.2e-79	89.22	30S ribosomal protein S3, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps3 PE...	[more]
A4QJF3	8.9e-79	89.29	30S ribosomal protein S3, chloroplastic OS=Aethionema cordifolium OX=434059 GN=r...	[more]

BLAST of Cmc07g0196431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4EU44	8.3e-88	100.00	30S ribosomal protein S3, chloroplastic OS=Cucumis melo OX=3656 GN=rps3 PE=3 SV=...	[more]
A0A249RZG7	8.3e-88	100.00	30S ribosomal protein S3, chloroplastic OS=Cucumis melo var. cantalupensis OX=36...	[more]
A0A2Z2CGI2	8.3e-88	100.00	30S ribosomal protein S3, chloroplastic OS=Coccinia grandis OX=387127 GN=rps3 PE...	[more]
X2EZ87	8.3e-88	100.00	30S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps3 P...	[more]
A0A249RXQ1	8.3e-88	100.00	30S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. agrestis OX=21761...	[more]

BLAST of Cmc07g0196431 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00800.1	1.8e-79	88.69	structural constituent of ribosome	[more]
ATMG00090.1	3.2e-07	32.14	structural constituent of ribosome;protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001351	Ribosomal protein S3, C-terminal	PFAM	PF00189	Ribosomal_S3_C	coord: 81..163 e-value: 2.8E-31 score: 107.9
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 4..67 e-value: 8.8E-10 score: 40.6
IPR005704	Ribosomal protein S3, bacterial-type	TIGRFAM	TIGR01009	TIGR01009	coord: 8..167 e-value: 1.3E-60 score: 202.8
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	GENE3D	3.30.1140.32		coord: 69..168 e-value: 7.0E-37 score: 127.9
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	SUPERFAMILY	54821	Ribosomal protein S3 C-terminal domain	coord: 69..167
None	No IPR available	PANTHER	PTHR11760	30S/40S RIBOSOMAL PROTEIN S3	coord: 1..166
None	No IPR available	PANTHER	PTHR11760:SF39	30S RIBOSOMAL PROTEIN S3, CHLOROPLASTIC	coord: 1..166
IPR018280	Ribosomal protein S3, conserved site	PROSITE	PS00548	RIBOSOMAL_S3	coord: 124..158
IPR009019	K homology domain superfamily, prokaryotic type	SUPERFAMILY	54814	Prokaryotic type KH domain (KH-domain type II)	coord: 8..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0196431.1	Cmc07g0196431.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding