Cmc07g0194911 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0194911
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Integrase catalytic domain-containing protein
Location	CMiso1.1chr07: 17865192 .. 17866181 (-)
RNA-Seq Expression	Cmc07g0194911
Synteny	Cmc07g0194911

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTAAAAACAGCCTTATTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAGTCTCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTACGACAAATTTAACAATACGTTGATAACCAATGGATTTAAAATAAATTCCTCCGACACGTGTGTCTATTCAAAGATGGTTGGAGCTGATTGCATATTAATATGTCTATATGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACTTGGGAGAAGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGATAGTGTGTCTCAACCCGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCGTTTGTTAAGATATCTTAAAGGGACGATAGATTACTGTCTACACTTCAACAAATTTCCTACCATACTAGAAGGATATTGTGATGCAAACTGGGTCATAGATAATGATGAGGTTAACTCTACTTGTGGGTATGTTTTTTTACTCGGAGGTGGAGCTATATCTTGGAAGTCTACAAAGCAGACTTGTATAGCCAGATCCACAATGGAATCCGAGTTCATAGCATTAGAGTTGGCAGGACAGGAGGTTGTGTGGATAAAAAATCTACTAGGAGATGTACCATTGTGGGGGACATCTGTACCGGAGTCCATACAGTGTGATTCGTAA

mRNA sequence

ATGGACGTAAAAACAGCCTTATTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAGTCTCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTACGACAAATTTAACAATACGTTGATAACCAATGGATTTAAAATAAATTCCTCCGACACGTGTGTCTATTCAAAGATGGTTGGAGCTGATTGCATATTAATATGTCTATATGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACTTGGGAGAAGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGATAGTGTGTCTCAACCCGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCGTTTGTTAAGATATCTTAAAGGGACGATAGATTACTGTCTACACTTCAACAAATTTCCTACCATACTAGAAGGATATTGTGATGCAAACTGGGTCATAGATAATGATGAGGTTAACTCTACTTGTGGGTATGTTTTTTTACTCGGAGGTGGAGCTATATCTTGGAAGTCTACAAAGCAGACTTGTATAGCCAGATCCACAATGGAATCCGAGTTCATAGCATTAGAGTTGGCAGGACAGGAGGTTGTGTGGATAAAAAATCTACTAGGAGATGTACCATTGTGGGGGACATCTGTACCGGAGTCCATACAGTGTGATTCGTAA

Coding sequence (CDS)

ATGGACGTAAAAACAGCCTTATTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAGTCTCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTACGACAAATTTAACAATACGTTGATAACCAATGGATTTAAAATAAATTCCTCCGACACGTGTGTCTATTCAAAGATGGTTGGAGCTGATTGCATATTAATATGTCTATATGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACTTGGGAGAAGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGATAGTGTGTCTCAACCCGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCGTTTGTTAAGATATCTTAAAGGGACGATAGATTACTGTCTACACTTCAACAAATTTCCTACCATACTAGAAGGATATTGTGATGCAAACTGGGTCATAGATAATGATGAGGTTAACTCTACTTGTGGGTATGTTTTTTTACTCGGAGGTGGAGCTATATCTTGGAAGTCTACAAAGCAGACTTGTATAGCCAGATCCACAATGGAATCCGAGTTCATAGCATTAGAGTTGGCAGGACAGGAGGTTGTGTGGATAAAAAATCTACTAGGAGATGTACCATTGTGGGGGACATCTGTACCGGAGTCCATACAGTGTGATTCGTAA

Protein sequence

MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLITNGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPLWGTSVPESIQCDS

Homology

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BLAST of Cmc07g0194911 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 656.4 bits (1692), Expect = 1.3e-184
Identity = 316/329 (96.05%), Postives = 320/329 (97.26%), Query Frame = 0


Query: 1    MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLIT 60
            MDVKTA LNG+LEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWY+KFNNTLIT
Sbjct: 944  MDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIT 1003

Query: 61   NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGEA 120
            NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTK+FLSSHFEMKDLGEA
Sbjct: 1004 NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEA 1063

Query: 121  DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 180
            DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE
Sbjct: 1064 DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 1123

Query: 181  YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNK 240
            YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALR LLRYLKGTIDYCLHF K
Sbjct: 1124 YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKK 1183

Query: 241  FPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA 300
            FP +LEGYCDANWV DNDEVNST GYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA
Sbjct: 1184 FPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA 1243

Query: 301  GQEVVWIKNLLGDVPLWGTSVPESIQCDS 330
            GQE  WIKNLLGDVPLWGTSVP SIQCDS
Sbjct: 1244 GQEAEWIKNLLGDVPLWGTSVPVSIQCDS 1272

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BLAST of Cmc07g0194911 vs. NCBI nr
Match: KAD6453934.1 (hypothetical protein E3N88_08640 [Mikania micrantha])

HSP 1 Score: 502.3 bits (1292), Expect = 3.2e-138
Identity = 235/330 (71.21%), Postives = 280/330 (84.85%), Query Frame = 0


Query: 1   MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLIT 60
           MDVKTA LNGDL+EEIYM QPEGF +SG E+KVCKLRKSLYGLKQAPK+WY+KF+ TL  
Sbjct: 295 MDVKTAFLNGDLDEEIYMLQPEGFVVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQ 354

Query: 61  NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGEA 120
           +G+ +N+SD+CVYSK      +LICLYVDDMLIFG +M  I  TK FLSS FEMKDLGEA
Sbjct: 355 DGYIVNNSDSCVYSKRSKTGYVLICLYVDDMLIFGADMHDINQTKAFLSSKFEMKDLGEA 414

Query: 121 DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 180
           DVILGVKI++    +SLCQSHY+E++LKKFD F+++PV+TP+D S  LKKN  +SVSQ E
Sbjct: 415 DVILGVKIKRTWNGISLCQSHYIEQMLKKFDCFELNPVKTPYDPSILLKKNNHESVSQSE 474

Query: 181 YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNK 240
           YAKIIGSVM+LMNYTRPDIAY VSRLSRYTHNP++ HW A+ RL+RYL+GT++ CLH+NK
Sbjct: 475 YAKIIGSVMFLMNYTRPDIAYTVSRLSRYTHNPSKEHWSAIHRLMRYLRGTMELCLHYNK 534

Query: 241 FPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA 300
           FP +LEGYCDANWV DNDEV+ST GYVF++GGGAISWKS+KQTCIARSTMESEFIALELA
Sbjct: 535 FPAVLEGYCDANWVTDNDEVSSTSGYVFIMGGGAISWKSSKQTCIARSTMESEFIALELA 594

Query: 301 GQEVVWIKNLLGDVPLWGTS-VPESIQCDS 330
           GQE  W++ LL D+P WG + +P  + CDS
Sbjct: 595 GQEAEWLRGLLSDIPQWGRNPLPIPLHCDS 624

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BLAST of Cmc07g0194911 vs. NCBI nr
Match: KAG7571733.1 (Integrase catalytic core [Arabidopsis suecica])

HSP 1 Score: 469.9 bits (1208), Expect = 1.8e-128
Identity = 227/330 (68.79%), Postives = 266/330 (80.61%), Query Frame = 0


Query: 1    MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLIT 60
            MDVKTA LNGDL EEIYM QPEGF I GQENKVCKL KSLYGLKQAPKQW++KF+NTL+ 
Sbjct: 885  MDVKTAFLNGDLHEEIYMMQPEGFIIEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLE 944

Query: 61   NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGEA 120
            NGF  N  DTCV+SK+     ++ICLYVDDMLI GT++E++ DTK FLSS F+MKDLGEA
Sbjct: 945  NGFVSNEGDTCVFSKVHEHGYVIICLYVDDMLILGTSLEIVCDTKVFLSSKFDMKDLGEA 1004

Query: 121  DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 180
            DVILG+K+ K  +  SL QSHY+EKILKKF  +D    ++P+D+S HL +N+G+SV+Q E
Sbjct: 1005 DVILGIKVVKTDSGFSLNQSHYIEKILKKFGYWDEPSAKSPYDSSLHLCQNRGESVNQSE 1064

Query: 181  YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNK 240
            YAK+IGSVMYLMN TRPDIAYAVSRLSRYTHNP   HW AL RL+RYLKGTID+ L ++ 
Sbjct: 1065 YAKVIGSVMYLMNCTRPDIAYAVSRLSRYTHNPGSNHWSALNRLMRYLKGTIDWNLCYSG 1124

Query: 241  FPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA 300
               +LE YCDANW  DNDEVNST G+VF L GGAI+WKSTKQTCIARSTMESE IALELA
Sbjct: 1125 TSCVLEAYCDANWSSDNDEVNSTSGFVFTLAGGAIAWKSTKQTCIARSTMESELIALELA 1184

Query: 301  GQEVVWIKNLLGDVPLWGTSVPE-SIQCDS 330
            GQE  W++NLL D P+ G   P  S++CDS
Sbjct: 1185 GQEAEWLRNLLADFPMMGRPCPSVSMRCDS 1214

[Close]

BLAST of Cmc07g0194911 vs. NCBI nr
Match: KAG7551885.1 (Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 468.4 bits (1204), Expect = 5.1e-128
Identity = 226/330 (68.48%), Postives = 265/330 (80.30%), Query Frame = 0


Query: 1    MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLIT 60
            MDVKTA LNGDL EEIYM QPEGF I GQENKVCKL KSLYGLKQAPKQW++KF+NTL+ 
Sbjct: 916  MDVKTAFLNGDLHEEIYMMQPEGFIIEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLE 975

Query: 61   NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGEA 120
            NGF  N  DTCV+SK+     ++ICLYVDDMLI GT++E++ DTK FLSS F+MKDLGEA
Sbjct: 976  NGFVSNEGDTCVFSKVHEHGYVIICLYVDDMLILGTSLEIVCDTKVFLSSKFDMKDLGEA 1035

Query: 121  DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 180
            DVILG+K+ K  +  SL QSHY+EKILKKF  +D    ++P+D+S HL +N+G+SV+Q E
Sbjct: 1036 DVILGIKVVKTDSGFSLNQSHYIEKILKKFGYWDEPSAKSPYDSSLHLCQNRGESVNQSE 1095

Query: 181  YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNK 240
            YAK+IGSVMYLMN TRPDIAY VSRLSRYTHNP   HW AL RL+RYLKGTID+ L ++ 
Sbjct: 1096 YAKVIGSVMYLMNCTRPDIAYVVSRLSRYTHNPGSNHWSALNRLMRYLKGTIDWNLCYSG 1155

Query: 241  FPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA 300
               +LE YCDANW  DNDEVNST G+VF L GGAI+WKSTKQTCIARSTMESE IALELA
Sbjct: 1156 TSCVLEAYCDANWSSDNDEVNSTSGFVFTLAGGAIAWKSTKQTCIARSTMESELIALELA 1215

Query: 301  GQEVVWIKNLLGDVPLWGTSVPE-SIQCDS 330
            GQE  W++NLL D P+ G   P  S++CDS
Sbjct: 1216 GQEAEWLRNLLADFPMMGRPCPSVSMRCDS 1245

[Close]

BLAST of Cmc07g0194911 vs. NCBI nr
Match: KAG7592238.1 (Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 468.4 bits (1204), Expect = 5.1e-128
Identity = 226/330 (68.48%), Postives = 265/330 (80.30%), Query Frame = 0


Query: 1    MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLIT 60
            MDVKTA LNGDL EEIYM QPEGF I GQENKVCKL KSLYGLKQAPKQW++KF+NTL+ 
Sbjct: 916  MDVKTAFLNGDLHEEIYMMQPEGFIIEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLE 975

Query: 61   NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGEA 120
            NGF  N  DTCV+SK+     ++ICLYVDDMLI GT++E++ DTK FLSS F+MKDLGEA
Sbjct: 976  NGFVSNEGDTCVFSKVHEHGYVIICLYVDDMLILGTSLEIVCDTKVFLSSKFDMKDLGEA 1035

Query: 121  DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 180
            DVILG+K+ K  +  SL QSHY+EKILKKF  +D    ++P+D+S HL +N+G+SV+Q E
Sbjct: 1036 DVILGIKVVKTDSGFSLNQSHYIEKILKKFGYWDEPSAKSPYDSSLHLCQNRGESVNQSE 1095

Query: 181  YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNK 240
            YAK+IGSVMYLMN TRPDIAY VSRLSRYTHNP   HW AL RL+RYLKGTID+ L ++ 
Sbjct: 1096 YAKVIGSVMYLMNCTRPDIAYVVSRLSRYTHNPGSNHWSALNRLMRYLKGTIDWNLCYSG 1155

Query: 241  FPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA 300
               +LE YCDANW  DNDEVNST G+VF L GGAI+WKSTKQTCIARSTMESE IALELA
Sbjct: 1156 TSCVLEAYCDANWSSDNDEVNSTSGFVFTLAGGAIAWKSTKQTCIARSTMESELIALELA 1215

Query: 301  GQEVVWIKNLLGDVPLWGTSVPE-SIQCDS 330
            GQE  W++NLL D P+ G   P  S++CDS
Sbjct: 1216 GQEAEWLRNLLADFPMMGRPCPSVSMRCDS 1245

[Close]

BLAST of Cmc07g0194911 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.9e-77
Identity = 155/327 (47.40%), Postives = 211/327 (64.53%), Query Frame = 0


Query: 1    MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLIT 60
            +DVKTA L+GDLEEEIYM QPEGF+++G+++ VCKL KSLYGLKQAP+QWY KF++ + +
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   NGFKINSSDTCVYSKMVGA-DCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGE 120
              +    SD CVY K     + I++ LYVDDMLI G +  LI   K  LS  F+MKDLG 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  ADVILGVKIRKNKTS--LSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKK------- 180
            A  ILG+KI + +TS  L L Q  Y+E++L++F+  +  PV TP      L K       
Sbjct: 1041 AQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTV 1100

Query: 181  -NKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLK 240
              KG+    P Y+  +GS+MY M  TRPDIA+AV  +SR+  NP + HW+A++ +LRYL+
Sbjct: 1101 EEKGNMAKVP-YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLR 1160

Query: 241  GTIDYCLHFNKFPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARST 300
            GT   CL F     IL+GY DA+   D D   S+ GY+F   GGAISW+S  Q C+A ST
Sbjct: 1161 GTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALST 1220

Query: 301  MESEFIALELAGQEVVWIKNLLGDVPL 317
             E+E+IA    G+E++W+K  L ++ L
Sbjct: 1221 TEAEYIAATETGKEMIWLKRFLQELGL 1246

[Close]

BLAST of Cmc07g0194911 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.3e-62
Identity = 134/331 (40.48%), Postives = 193/331 (58.31%), Query Frame = 0


Query: 1    MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLIT 60
            +DV  A L G L +++YM+QP GF    + N VCKLRK+LYGLKQAP+ WY +  N L+T
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGEA 120
             GF  + SDT ++    G   + + +YVDD+LI G +  L+ +T   LS  F +KD  E 
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQP- 180
               LG++ ++  T L L Q  Y+  +L + +     PV TP   S  L    G  ++ P 
Sbjct: 1184 HYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPT 1243

Query: 181  EYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFN 240
            EY  I+GS+ YL  +TRPDI+YAV+RLS++ H P   H  AL+R+LRYL GT ++ +   
Sbjct: 1244 EYRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLK 1303

Query: 241  KFPTI-LEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALE 300
            K  T+ L  Y DA+W  D D+  ST GY+  LG   ISW S KQ  + RS+ E+E+ ++ 
Sbjct: 1304 KGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVA 1363

Query: 301  LAGQEVVWIKNLLGDVPLWGTSVPESIQCDS 330
                E+ WI +LL ++ +  T  P  I CD+
Sbjct: 1364 NTSSEMQWICSLLTELGIRLTR-PPVIYCDN 1392

[Close]

BLAST of Cmc07g0194911 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.1e-61
Identity = 131/331 (39.58%), Postives = 191/331 (57.70%), Query Frame = 0


Query: 1    MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLIT 60
            +DV  A L G L +E+YM+QP GF    + + VC+LRK++YGLKQAP+ WY +    L+T
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGEA 120
             GF  + SDT ++    G   I + +YVDD+LI G +  L+  T   LS  F +K+  + 
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQP- 180
               LG++ ++    L L Q  Y   +L + +     PV TP   S  L  + G  +  P 
Sbjct: 1167 HYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPT 1226

Query: 181  EYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFN 240
            EY  I+GS+ YL  +TRPD++YAV+RLS+Y H P   HW+AL+R+LRYL GT D+ +   
Sbjct: 1227 EYRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLK 1286

Query: 241  KFPTI-LEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALE 300
            K  T+ L  Y DA+W  D D+  ST GY+  LG   ISW S KQ  + RS+ E+E+ ++ 
Sbjct: 1287 KGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVA 1346

Query: 301  LAGQEVVWIKNLLGDVPLWGTSVPESIQCDS 330
                E+ WI +LL ++ +   S P  I CD+
Sbjct: 1347 NTSSELQWICSLLTELGI-QLSHPPVIYCDN 1375

[Close]

BLAST of Cmc07g0194911 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 214.2 bits (544), Expect = 2.3e-54
Identity = 126/320 (39.38%), Postives = 181/320 (56.56%), Query Frame = 0


Query: 1    MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLIT 60
            MDVKTA LNG L+EEIYM  P+G  IS   + VCKL K++YGLKQA + W++ F   L  
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   NGFKINSSDTCVYSKMVG--ADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLG 120
              F  +S D C+Y    G   + I + LYVDD++I   +M  + + K +L   F M DL 
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  EADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQ 180
            E    +G++I   +  + L QS YV+KIL KF+  + + V TP  +  + +    D    
Sbjct: 1121 EIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCN 1180

Query: 181  PEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHF 240
                 +IG +MY+M  TRPD+  AV+ LSRY+   N   W  L+R+LRYLKGTID  L F
Sbjct: 1181 TPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIF 1240

Query: 241  NK---FPTILEGYCDANWVIDNDEVNSTCGYVF-LLGGGAISWKSTKQTCIARSTMESEF 300
             K   F   + GY D++W     +  ST GY+F +     I W + +Q  +A S+ E+E+
Sbjct: 1241 KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEY 1300

Query: 301  IALELAGQEVVWIKNLLGDV 315
            +AL  A +E +W+K LL  +
Sbjct: 1301 MALFEAVREALWLKFLLTSI 1318

[Close]

BLAST of Cmc07g0194911 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-39
Identity = 104/308 (33.77%), Postives = 156/308 (50.65%), Query Frame = 0


Query: 1   MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLIT 60
           MDV TA LN  ++E IY+ QP GF      + V +L   +YGLKQAP  W +  NNTL  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGEA 120
            GF  +  +  +Y +      I I +YVDD+L+   + ++    K  L+  + MKDLG+ 
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 DVILGVKIRKNKT-SLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQ- 180
           D  LG+ I ++    ++L    Y+ K   + +       +TP   SK L +     +   
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 181 PEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHF 240
             Y  I+G +++  N  RPDI+Y VS LSR+   P   H ++ RR+LRYL  T   CL +
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240

Query: 241 NKFPTI-LEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTK-QTCIARSTMESEFIA 300
                + L  YCDA+    +D  +ST GYV LL G  ++W S K +  I   + E+E+I 
Sbjct: 241 RSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 300

Query: 301 LELAGQEV 305
                 E+
Sbjct: 301 ASETVMEI 308

[Close]

BLAST of Cmc07g0194911 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 656.4 bits (1692), Expect = 6.4e-185
Identity = 316/329 (96.05%), Postives = 320/329 (97.26%), Query Frame = 0


Query: 1    MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLIT 60
            MDVKTA LNG+LEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWY+KFNNTLIT
Sbjct: 944  MDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIT 1003

Query: 61   NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGEA 120
            NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTK+FLSSHFEMKDLGEA
Sbjct: 1004 NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEA 1063

Query: 121  DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 180
            DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE
Sbjct: 1064 DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 1123

Query: 181  YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNK 240
            YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALR LLRYLKGTIDYCLHF K
Sbjct: 1124 YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKK 1183

Query: 241  FPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA 300
            FP +LEGYCDANWV DNDEVNST GYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA
Sbjct: 1184 FPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA 1243

Query: 301  GQEVVWIKNLLGDVPLWGTSVPESIQCDS 330
            GQE  WIKNLLGDVPLWGTSVP SIQCDS
Sbjct: 1244 GQEAEWIKNLLGDVPLWGTSVPVSIQCDS 1272

[Close]

BLAST of Cmc07g0194911 vs. ExPASy TrEMBL
Match: A0A5N6PGV2 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_08640 PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 1.6e-138
Identity = 235/330 (71.21%), Postives = 280/330 (84.85%), Query Frame = 0


Query: 1   MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLIT 60
           MDVKTA LNGDL+EEIYM QPEGF +SG E+KVCKLRKSLYGLKQAPK+WY+KF+ TL  
Sbjct: 295 MDVKTAFLNGDLDEEIYMLQPEGFVVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQ 354

Query: 61  NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGEA 120
           +G+ +N+SD+CVYSK      +LICLYVDDMLIFG +M  I  TK FLSS FEMKDLGEA
Sbjct: 355 DGYIVNNSDSCVYSKRSKTGYVLICLYVDDMLIFGADMHDINQTKAFLSSKFEMKDLGEA 414

Query: 121 DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 180
           DVILGVKI++    +SLCQSHY+E++LKKFD F+++PV+TP+D S  LKKN  +SVSQ E
Sbjct: 415 DVILGVKIKRTWNGISLCQSHYIEQMLKKFDCFELNPVKTPYDPSILLKKNNHESVSQSE 474

Query: 181 YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNK 240
           YAKIIGSVM+LMNYTRPDIAY VSRLSRYTHNP++ HW A+ RL+RYL+GT++ CLH+NK
Sbjct: 475 YAKIIGSVMFLMNYTRPDIAYTVSRLSRYTHNPSKEHWSAIHRLMRYLRGTMELCLHYNK 534

Query: 241 FPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA 300
           FP +LEGYCDANWV DNDEV+ST GYVF++GGGAISWKS+KQTCIARSTMESEFIALELA
Sbjct: 535 FPAVLEGYCDANWVTDNDEVSSTSGYVFIMGGGAISWKSSKQTCIARSTMESEFIALELA 594

Query: 301 GQEVVWIKNLLGDVPLWGTS-VPESIQCDS 330
           GQE  W++ LL D+P WG + +P  + CDS
Sbjct: 595 GQEAEWLRGLLSDIPQWGRNPLPIPLHCDS 624

[Close]

BLAST of Cmc07g0194911 vs. ExPASy TrEMBL
Match: A0A2N9EQT1 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4851 PE=4 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 3.6e-135
Identity = 230/330 (69.70%), Postives = 272/330 (82.42%), Query Frame = 0


Query: 1   MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLIT 60
           MDVKTA LNGDL+EEIYM QPEGF + GQENKVCKLRKSLYGLKQAPKQW++KF+ TL++
Sbjct: 383 MDVKTAFLNGDLDEEIYMDQPEGFVVQGQENKVCKLRKSLYGLKQAPKQWHEKFDKTLVS 442

Query: 61  NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGEA 120
           NGF +N SD CVYSK  GA  ++ICLYVDDMLIFGT+M  + +TK FLSS+F+MKDLGEA
Sbjct: 443 NGFAVNESDRCVYSKFSGASGVIICLYVDDMLIFGTDMNAVKNTKDFLSSNFDMKDLGEA 502

Query: 121 DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 180
           D+ILG++I +N   L+L QSHY+EK+LKKF+ +D  PVRTP+D S HLKKN G  VSQ E
Sbjct: 503 DLILGIRIIRNNEGLTLSQSHYIEKVLKKFNHYDYEPVRTPYDPSIHLKKNSGSPVSQSE 562

Query: 181 YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNK 240
           YAKIIGSVM+LMN TRPDIAYAVSRLSRYTHNP   HW+A+ RLL+YLKGT++  L +  
Sbjct: 563 YAKIIGSVMFLMNCTRPDIAYAVSRLSRYTHNPAHEHWNAITRLLKYLKGTMNLGLTYTG 622

Query: 241 FPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA 300
            P +LEGYCDANW+ DNDE NST GYVF LGGGAISWKS+KQTC ARSTMESEF+ALE A
Sbjct: 623 HPAVLEGYCDANWISDNDETNSTSGYVFTLGGGAISWKSSKQTCNARSTMESEFVALEKA 682

Query: 301 GQEVVWIKNLLGDVPLWGTSVPE-SIQCDS 330
           G E  W++NLL D+PLW   +P  ++ CDS
Sbjct: 683 GTEAEWLRNLLADIPLWDKPLPSIAMHCDS 712

[Close]

BLAST of Cmc07g0194911 vs. ExPASy TrEMBL
Match: A0A2N9H4B0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 3.6e-135
Identity = 230/330 (69.70%), Postives = 272/330 (82.42%), Query Frame = 0


Query: 1    MDVKTALLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYDKFNNTLIT 60
            MDVKTA LNGDL+EEIYM QPEGF + GQENKVCKLRKSLYGLKQAPKQW++KF+ TL++
Sbjct: 893  MDVKTAFLNGDLDEEIYMDQPEGFVVQGQENKVCKLRKSLYGLKQAPKQWHEKFDKTLVS 952

Query: 61   NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGEA 120
            NGF +N SD CVYSK  GA  ++ICLYVDDMLIFGT+M  + +TK FLSS+F+MKDLGEA
Sbjct: 953  NGFAVNESDRCVYSKFSGASGVIICLYVDDMLIFGTDMNAVKNTKDFLSSNFDMKDLGEA 1012

Query: 121  DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 180
            D+ILG++I +N   L+L QSHY+EK+LKKF+ +D  PVRTP+D S HLKKN G  VSQ E
Sbjct: 1013 DLILGIRIIRNNEGLTLSQSHYIEKVLKKFNHYDYEPVRTPYDPSIHLKKNSGSPVSQSE 1072

Query: 181  YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNK 240
            YAKIIGSVM+LMN TRPDIAYAVSRLSRYTHNP   HW+A+ RLL+YLKGT++  L +  
Sbjct: 1073 YAKIIGSVMFLMNCTRPDIAYAVSRLSRYTHNPAHEHWNAITRLLKYLKGTMNLGLTYTG 1132

Query: 241  FPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA 300
             P +LEGYCDANW+ DNDE NST GYVF LGGGAISWKS+KQTC ARSTMESEF+ALE A
Sbjct: 1133 HPAVLEGYCDANWISDNDETNSTSGYVFTLGGGAISWKSSKQTCNARSTMESEFVALEKA 1192

Query: 301  GQEVVWIKNLLGDVPLWGTSVPE-SIQCDS 330
            G E  W++NLL D+PLW   +P  ++ CDS
Sbjct: 1193 GTEAEWLRNLLADIPLWDKPLPSIAMHCDS 1222

[Close]

BLAST of Cmc07g0194911 vs. ExPASy TrEMBL
Match: A0A5A7U7W6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001180 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.4e-123
Identity = 217/232 (93.53%), Postives = 221/232 (95.26%), Query Frame = 0


Query: 98  MELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP 157
           MEL+TDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFD FDVSP
Sbjct: 1   MELMTDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDFFDVSP 60

Query: 158 VRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYH 217
           VRTPFDASKHL KNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNP+RYH
Sbjct: 61  VRTPFDASKHLMKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYH 120

Query: 218 WDALRRLLRYLKGTIDYCLHFNKFPTILEGYCDANWVIDNDEVNSTCGYVFLLGGGAISW 277
           WD LR LLRYLKGTIDYCL+FNKFP +LEGYCDANWV DNDEVNST GYVFLLGGGAISW
Sbjct: 121 WDVLRHLLRYLKGTIDYCLYFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISW 180

Query: 278 KSTKQTCIARSTMESEFIALELAGQEVVWIKNLLGDVPLWGTSVPESIQCDS 330
           KSTKQTCIARSTMESEFIALELAGQE  WIKNLLGDVPLWGT VP SIQCDS
Sbjct: 181 KSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTYVPVSIQCDS 232

[Close]

BLAST of Cmc07g0194911 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 208.4 bits (529), Expect = 8.9e-54
Identity = 119/335 (35.52%), Postives = 186/335 (55.52%), Query Frame = 0


Query: 1   MDVKTALLNGDLEEEIYMTQPEGFKI----SGQENKVCKLRKSLYGLKQAPKQWYDKFNN 60
           +D+  A LNGDL+EEIYM  P G+      S   N VC L+KS+YGLKQA +QW+ KF+ 
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  TLITNGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFFLSSHFEMKD 120
           TLI  GF  + SD   + K+     + + +YVDD++I   N   + + K  L S F+++D
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNK-GDS 180
           LG     LG++I ++   +++CQ  Y   +L +       P   P D S     +  GD 
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF 372

Query: 181 VSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYC 240
           V    Y ++IG +MYL   TR DI++AV++LS+++  P   H  A+ ++L Y+KGT+   
Sbjct: 373 VDAKAYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQG 432

Query: 241 LHFNKFPTI-LEGYCDANWVIDNDEVNSTCGYVFLLGGGAISWKSTKQTCIARSTMESEF 300
           L ++    + L+ + DA++    D   ST GY   LG   ISWKS KQ  +++S+ E+E+
Sbjct: 433 LFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEY 492

Query: 301 IALELAGQEVVWIKNLLGDVPLWGTSVPESIQCDS 330
            AL  A  E++W+     ++ L   S P  + CD+
Sbjct: 493 RALSFATDEMMWLAQFFRELQL-PLSKPTLLFCDN 525

[Close]

BLAST of Cmc07g0194911 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 147.1 bits (370), Expect = 2.4e-35
Identity = 79/224 (35.27%), Postives = 126/224 (56.25%), Query Frame = 0


Query: 84  ICLYVDDMLIFGTNMELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYV 143
           + LYVDD+L+ G++  L+    F LSS F MKDLG     LG++I+ + + L L Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 144 EKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAV 203
           E+IL      D  P+ TP     +   +        ++  I+G++ YL   TRPDI+YAV
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYL-TLTRPDISYAV 122

Query: 204 SRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTI-LEGYCDANWVIDNDEVNS 263
           + + +  H P    +D L+R+LRY+KGTI + L+ +K   + ++ +CD++W        S
Sbjct: 123 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 182

Query: 264 TCGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEVVW 307
           T G+   LG   ISW + +Q  ++RS+ E+E+ AL L   E+ W
Sbjct: 183 TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc07g0194911 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.5e-05
Identity = 26/83 (31.33%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 189 MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRRLLRYLKGTIDYCLHFNKFPTI-LEG 248
           MYL   TRPD+ +AV+RLS+++         A+ ++L Y+KGT+   L ++    + L+ 
Sbjct: 1   MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 249 YCDANWVIDNDEVNSTCGYVFLL 271
           + D++W    D   S  G+  L+
Sbjct: 61  FADSDWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Cmc07g0194911 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	1.3e-184	96.05	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAD6453934.1	3.2e-138	71.21	hypothetical protein E3N88_08640 [Mikania micrantha]	[more]
KAG7571733.1	1.8e-128	68.79	Integrase catalytic core [Arabidopsis suecica]	[more]
KAG7551885.1	5.1e-128	68.48	Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7592238.1	5.1e-128	68.48	Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]

BLAST of Cmc07g0194911 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.9e-77	47.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	1.3e-62	40.48	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.1e-61	39.58	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	2.3e-54	39.38	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	1.2e-39	33.77	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc07g0194911 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	6.4e-185	96.05	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5N6PGV2	1.6e-138	71.21	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micran...	[more]
A0A2N9EQT1	3.6e-135	69.70	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9H4B0	3.6e-135	69.70	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1	[more]
A0A5A7U7W6	1.4e-123	93.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc07g0194911 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.9e-54	35.52	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.4e-35	35.27	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.5e-05	31.33	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..162 e-value: 3.6E-50 score: 170.8
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..239
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 246..329 e-value: 5.84816E-31 score: 111.791
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..298

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0194911.1	Cmc07g0194911.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding