Cmc07g0194861 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0194861
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr07: 17779260 .. 17779823 (-)
RNA-Seq Expression	Cmc07g0194861
Synteny	Cmc07g0194861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAACTGGTGGAGGAAATGCTAAGTTTAGGGATTATTAGGCCAAGTAATAGTTTTTTTTCAAGCCCAGTGCTGCTGGTTAAAAAGAAAGATGACAGTTGGCGTTTCTGTGTCGATTATCGTGCAGTAAACAACGCTACAATCCCGGATAAATTCCCAATACCAGTGGTTGAAGAATTATTTGATGAGTTAAATGGCGCAACCGTGTTCTCAAAGATAGACCTGAAGTCAGGATATCATCAGATAAGAATGGTTGATGAGGATATTCCAAAAACGGCTTTTCGCACTCATGAAGGTCATTATGAGTTTCTTGTTATGCCGTTTCGATTAACCAACGCTCCTGCTACTTTTCAAGCCTTGATGAATAACATTTTTAAACCATTTTTGAGAAAATTTGTTTTGGTCTTCTTCGATGATATCTTGATCTACAGCAAAAATGAGAAGGACCACGTAGAGCATATTGAAAAAGTCTTCCTCACATTTATAAGACATGCCTTATTCGCCAATAAAAAAAAGTGTAATTTCGATATCAGCAAACGGATGCGTCCGGGTTTGGAGTAG

mRNA sequence

ATGGAAAAACTGGTGGAGGAAATGCTAAGTTTAGGGATTATTAGGCCAAGTAATAGTTTTTTTTCAAGCCCAGTGCTGCTGGTTAAAAAGAAAGATGACAGTTGGCGTTTCTGTGTCGATTATCGTGCAGTAAACAACGCTACAATCCCGGATAAATTCCCAATACCAGTGGTTGAAGAATTATTTGATGAGTTAAATGGCGCAACCGTGTTCTCAAAGATAGACCTGAAGTCAGGATATCATCAGATAAGAATGGTTGATGAGGATATTCCAAAAACGGCTTTTCGCACTCATGAAGGTCATTATGAGTTTCTTGTTATGCCGTTTCGATTAACCAACGCTCCTGCTACTTTTCAAGCCTTGATGAATAACATTTTTAAACCATTTTTGAGAAAATTTGTTTTGGTCTTCTTCGATGATATCTTGATCTACAGCAAAAATGAGAAGGACCACGTAGAGCATATTGAAAAAGTCTTCCTCACATTTATAAGACATGCCTTATTCGCCAATAAAAAAAAGTGTAATTTCGATATCAGCAAACGGATGCGTCCGGGTTTGGAGTAG

Coding sequence (CDS)

ATGGAAAAACTGGTGGAGGAAATGCTAAGTTTAGGGATTATTAGGCCAAGTAATAGTTTTTTTTCAAGCCCAGTGCTGCTGGTTAAAAAGAAAGATGACAGTTGGCGTTTCTGTGTCGATTATCGTGCAGTAAACAACGCTACAATCCCGGATAAATTCCCAATACCAGTGGTTGAAGAATTATTTGATGAGTTAAATGGCGCAACCGTGTTCTCAAAGATAGACCTGAAGTCAGGATATCATCAGATAAGAATGGTTGATGAGGATATTCCAAAAACGGCTTTTCGCACTCATGAAGGTCATTATGAGTTTCTTGTTATGCCGTTTCGATTAACCAACGCTCCTGCTACTTTTCAAGCCTTGATGAATAACATTTTTAAACCATTTTTGAGAAAATTTGTTTTGGTCTTCTTCGATGATATCTTGATCTACAGCAAAAATGAGAAGGACCACGTAGAGCATATTGAAAAAGTCTTCCTCACATTTATAAGACATGCCTTATTCGCCAATAAAAAAAAGTGTAATTTCGATATCAGCAAACGGATGCGTCCGGGTTTGGAGTAG

Protein sequence

MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDSWRFCVDYRAVNNATIPDKFPIPVVEELFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAPATFQALMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCNFDISKRMRPGLE

Homology

[Close]

BLAST of Cmc07g0194861 vs. NCBI nr
Match: TYK14861.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 343.2 bits (879), Expect = 1.4e-90
Identity = 168/180 (93.33%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDSWRFCVDYRAVNNATIPDKFPIPVVEE 60
           MEKLVEEML+ GIIRPSNS FSSPVLLVKK+D SWRFCVDYRAVNNATIPDKFPIPVVEE
Sbjct: 545 MEKLVEEMLTSGIIRPSNSPFSSPVLLVKKRDGSWRFCVDYRAVNNATIPDKFPIPVVEE 604

Query: 61  LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAPATFQA 120
           LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPF LTNAPATFQA
Sbjct: 605 LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQA 664

Query: 121 LMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCNFDISK 180
           LMNNIF+PFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLT  RHALFANKKKCNF   K
Sbjct: 665 LMNNIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQK 724

[Close]

BLAST of Cmc07g0194861 vs. NCBI nr
Match: KAA0053432.1 (Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 340.9 bits (873), Expect = 7.0e-90
Identity = 168/180 (93.33%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDSWRFCVDYRAVNNATIPDKFPIPVVEE 60
           MEKLVEEML+ GIIRPSNS FSSPVLLVKKKD SWRFCVDYRAVNNATIPDKFPIPVVEE
Sbjct: 1   MEKLVEEMLTSGIIRPSNSPFSSPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVVEE 60

Query: 61  LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAPATFQA 120
           LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPF LTNAPATFQA
Sbjct: 61  LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQA 120

Query: 121 LMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCNFDISK 180
           LMNNIF+PFLRKFVLVFFDDILI SKNEKDHVEHIEKVFLT  RHALFANKKKCNF   K
Sbjct: 121 LMNNIFRPFLRKFVLVFFDDILICSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQK 180

[Close]

BLAST of Cmc07g0194861 vs. NCBI nr
Match: TYK02195.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 333.2 bits (853), Expect = 1.5e-87
Identity = 160/180 (88.89%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDSWRFCVDYRAVNNATIPDKFPIPVVEE 60
           ME+LVEEML+ GIIRPSNS FSSPVLLVKKKD SWRFCVDYRAVNNATIPDKFPIPV EE
Sbjct: 654 MERLVEEMLASGIIRPSNSPFSSPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVAEE 713

Query: 61  LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAPATFQA 120
           LFDELNGATVFSKIDLKSGYHQIRM+D+DIPKTAFRTHEGHYEFLVMPF LTNAPATFQA
Sbjct: 714 LFDELNGATVFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQA 773

Query: 121 LMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCNFDISK 180
           LMN+IF+PFLRKFVLVFFDDILIYSKNEKDH+EHIEKVFL   +H+LFANKKKCNF   K
Sbjct: 774 LMNSIFRPFLRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKK 833

[Close]

BLAST of Cmc07g0194861 vs. NCBI nr
Match: KAA0037097.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 333.2 bits (853), Expect = 1.5e-87
Identity = 160/180 (88.89%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDSWRFCVDYRAVNNATIPDKFPIPVVEE 60
           ME+LVEEML+ GIIRPSNS FSSPVLLVKKKD SWRFCVDYRAVNNATIPDKFPIPV EE
Sbjct: 559 MERLVEEMLASGIIRPSNSPFSSPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVAEE 618

Query: 61  LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAPATFQA 120
           LFDELNGATVFSKIDLKSGYHQIRM+D+DIPKTAFRTHEGHYEFLVMPF LTNAPATFQA
Sbjct: 619 LFDELNGATVFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQA 678

Query: 121 LMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCNFDISK 180
           LMN+IF+PFLRKFVLVFFDDILIYSKNEKDH+EHIEKVFL   +H+LFANKKKCNF   K
Sbjct: 679 LMNSIFRPFLRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKK 738

[Close]

BLAST of Cmc07g0194861 vs. NCBI nr
Match: TYK23779.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 329.7 bits (844), Expect = 1.6e-86
Identity = 157/180 (87.22%), Postives = 167/180 (92.78%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDSWRFCVDYRAVNNATIPDKFPIPVVEE 60
           ME+LVEEML+ GIIRPSNS FSSPVLLVKKKD SWRFCVDYR VNNATIPDKFPIPV EE
Sbjct: 564 MERLVEEMLASGIIRPSNSPFSSPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVAEE 623

Query: 61  LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAPATFQA 120
           LFDELNGAT+FSKIDLKSGYHQIRM+D+DIPKTAFRTHEGHYEFLVMPF LTNAP TFQA
Sbjct: 624 LFDELNGATIFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQA 683

Query: 121 LMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCNFDISK 180
           LMN+IF+PFLRKFVLVFFDDILIYSKNEKDH+EHIEKVFL   +H+LFANKKKCNF   K
Sbjct: 684 LMNSIFRPFLRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKK 743

[Close]

BLAST of Cmc07g0194861 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.2e-41
Identity = 85/181 (46.96%), Postives = 114/181 (62.98%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDS-----WRFCVDYRAVNNATIPDKFPI 60
           +E  V+EML+ G+IR SNS ++SP  +V KK D+     +R  +DYR +N  TIPD++PI
Sbjct: 222 VENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPI 281

Query: 61  PVVEELFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAP 120
           P ++E+  +L     F+ IDL  G+HQI M +E I KTAF T  GHYE+L MPF L NAP
Sbjct: 282 PNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAP 341

Query: 121 ATFQALMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCN 177
           ATFQ  MNNI +P L K  LV+ DDI+I+S +  +H+  I+ VF       L     KC 
Sbjct: 342 ATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCE 401

[Close]

BLAST of Cmc07g0194861 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 161.8 bits (408), Expect = 7.6e-39
Identity = 81/176 (46.02%), Postives = 112/176 (63.64%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDSWRFCVDYRAVNNATIPDKFPIPVVEE 60
           + K+V+++L    I PS S  SSPV+LV KKD ++R CVDYR +N ATI D FP+P ++ 
Sbjct: 612 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN 671

Query: 61  LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAPATFQA 120
           L   +  A +F+ +DL SGYHQI M  +D  KTAF T  G YE+ VMPF L NAP+TF  
Sbjct: 672 LLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR 731

Query: 121 LMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCNF 177
            M + F+    +FV V+ DDILI+S++ ++H +H++ V        L   KKKC F
Sbjct: 732 YMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKF 785

[Close]

BLAST of Cmc07g0194861 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 7.6e-39
Identity = 81/176 (46.02%), Postives = 112/176 (63.64%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDSWRFCVDYRAVNNATIPDKFPIPVVEE 60
           + K+V+++L    I PS S  SSPV+LV KKD ++R CVDYR +N ATI D FP+P ++ 
Sbjct: 638 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN 697

Query: 61  LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAPATFQA 120
           L   +  A +F+ +DL SGYHQI M  +D  KTAF T  G YE+ VMPF L NAP+TF  
Sbjct: 698 LLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR 757

Query: 121 LMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCNF 177
            M + F+    +FV V+ DDILI+S++ ++H +H++ V        L   KKKC F
Sbjct: 758 YMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKF 811

[Close]

BLAST of Cmc07g0194861 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.8e-38
Identity = 78/181 (43.09%), Postives = 113/181 (62.43%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDS-----WRFCVDYRAVNNATIPDKFPI 60
           +E  +++ML+ GIIR SNS ++SP+ +V KK D+     +R  +DYR +N  T+ D+ PI
Sbjct: 223 VESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPI 282

Query: 61  PVVEELFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAP 120
           P ++E+  +L     F+ IDL  G+HQI M  E + KTAF T  GHYE+L MPF L NAP
Sbjct: 283 PNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAP 342

Query: 121 ATFQALMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCN 177
           ATFQ  MN+I +P L K  LV+ DDI+++S +  +H++ +  VF    +  L     KC 
Sbjct: 343 ATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCE 402

[Close]

BLAST of Cmc07g0194861 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.9e-35
Identity = 73/181 (40.33%), Postives = 113/181 (62.43%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKK-----DDSWRFCVDYRAVNNATIPDKFPI 60
           +E+ ++E+L  GIIRPSNS ++SP+ +V KK     +  +R  VD++ +N  TIPD +PI
Sbjct: 139 VERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPI 198

Query: 61  PVVEELFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAP 120
           P +      L  A  F+ +DL SG+HQI M + DIPKTAF T  G YEFL +PF L NAP
Sbjct: 199 PDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAP 258

Query: 121 ATFQALMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCN 177
           A FQ ++++I +  + K   V+ DDI+++S++   H +++  V  +  +  L  N +K +
Sbjct: 259 AIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSH 318

[Close]

BLAST of Cmc07g0194861 vs. ExPASy TrEMBL
Match: A0A5D3CSQ2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00320 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 6.8e-91
Identity = 168/180 (93.33%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDSWRFCVDYRAVNNATIPDKFPIPVVEE 60
           MEKLVEEML+ GIIRPSNS FSSPVLLVKK+D SWRFCVDYRAVNNATIPDKFPIPVVEE
Sbjct: 545 MEKLVEEMLTSGIIRPSNSPFSSPVLLVKKRDGSWRFCVDYRAVNNATIPDKFPIPVVEE 604

Query: 61  LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAPATFQA 120
           LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPF LTNAPATFQA
Sbjct: 605 LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQA 664

Query: 121 LMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCNFDISK 180
           LMNNIF+PFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLT  RHALFANKKKCNF   K
Sbjct: 665 LMNNIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQK 724

[Close]

BLAST of Cmc07g0194861 vs. ExPASy TrEMBL
Match: A0A5A7UCF9 (Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G001030 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.4e-90
Identity = 168/180 (93.33%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDSWRFCVDYRAVNNATIPDKFPIPVVEE 60
           MEKLVEEML+ GIIRPSNS FSSPVLLVKKKD SWRFCVDYRAVNNATIPDKFPIPVVEE
Sbjct: 1   MEKLVEEMLTSGIIRPSNSPFSSPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVVEE 60

Query: 61  LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAPATFQA 120
           LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPF LTNAPATFQA
Sbjct: 61  LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQA 120

Query: 121 LMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCNFDISK 180
           LMNNIF+PFLRKFVLVFFDDILI SKNEKDHVEHIEKVFLT  RHALFANKKKCNF   K
Sbjct: 121 LMNNIFRPFLRKFVLVFFDDILICSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQQK 180

[Close]

BLAST of Cmc07g0194861 vs. ExPASy TrEMBL
Match: A0A5D3BSP2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00980 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 7.1e-88
Identity = 160/180 (88.89%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDSWRFCVDYRAVNNATIPDKFPIPVVEE 60
           ME+LVEEML+ GIIRPSNS FSSPVLLVKKKD SWRFCVDYRAVNNATIPDKFPIPV EE
Sbjct: 654 MERLVEEMLASGIIRPSNSPFSSPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVAEE 713

Query: 61  LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAPATFQA 120
           LFDELNGATVFSKIDLKSGYHQIRM+D+DIPKTAFRTHEGHYEFLVMPF LTNAPATFQA
Sbjct: 714 LFDELNGATVFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQA 773

Query: 121 LMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCNFDISK 180
           LMN+IF+PFLRKFVLVFFDDILIYSKNEKDH+EHIEKVFL   +H+LFANKKKCNF   K
Sbjct: 774 LMNSIFRPFLRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKK 833

[Close]

BLAST of Cmc07g0194861 vs. ExPASy TrEMBL
Match: A0A5A7T6B1 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G002030 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 7.1e-88
Identity = 160/180 (88.89%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDSWRFCVDYRAVNNATIPDKFPIPVVEE 60
           ME+LVEEML+ GIIRPSNS FSSPVLLVKKKD SWRFCVDYRAVNNATIPDKFPIPV EE
Sbjct: 559 MERLVEEMLASGIIRPSNSPFSSPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVAEE 618

Query: 61  LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAPATFQA 120
           LFDELNGATVFSKIDLKSGYHQIRM+D+DIPKTAFRTHEGHYEFLVMPF LTNAPATFQA
Sbjct: 619 LFDELNGATVFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQA 678

Query: 121 LMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCNFDISK 180
           LMN+IF+PFLRKFVLVFFDDILIYSKNEKDH+EHIEKVFL   +H+LFANKKKCNF   K
Sbjct: 679 LMNSIFRPFLRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKK 738

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BLAST of Cmc07g0194861 vs. ExPASy TrEMBL
Match: A0A5D3DKH5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G001060 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 7.8e-87
Identity = 157/180 (87.22%), Postives = 167/180 (92.78%), Query Frame = 0


Query: 1   MEKLVEEMLSLGIIRPSNSFFSSPVLLVKKKDDSWRFCVDYRAVNNATIPDKFPIPVVEE 60
           ME+LVEEML+ GIIRPSNS FSSPVLLVKKKD SWRFCVDYR VNNATIPDKFPIPV EE
Sbjct: 564 MERLVEEMLASGIIRPSNSPFSSPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVAEE 623

Query: 61  LFDELNGATVFSKIDLKSGYHQIRMVDEDIPKTAFRTHEGHYEFLVMPFRLTNAPATFQA 120
           LFDELNGAT+FSKIDLKSGYHQIRM+D+DIPKTAFRTHEGHYEFLVMPF LTNAP TFQA
Sbjct: 624 LFDELNGATIFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQA 683

Query: 121 LMNNIFKPFLRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTFIRHALFANKKKCNFDISK 180
           LMN+IF+PFLRKFVLVFFDDILIYSKNEKDH+EHIEKVFL   +H+LFANKKKCNF   K
Sbjct: 684 LMNSIFRPFLRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKK 743

The following BLAST results are available for this feature:

BLAST of Cmc07g0194861 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14861.1	1.4e-90	93.33	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0053432.1	7.0e-90	93.33	Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]	[more]
TYK02195.1	1.5e-87	88.89	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037097.1	1.5e-87	88.89	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK23779.1	1.6e-86	87.22	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0194861 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	8.2e-41	46.96	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q99315	7.6e-39	46.02	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	7.6e-39	46.02	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P04323	3.8e-38	43.09	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	3.9e-35	40.33	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of Cmc07g0194861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSQ2	6.8e-91	93.33	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UCF9	3.4e-90	93.33	Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3BSP2	7.1e-88	88.89	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T6B1	7.1e-88	88.89	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DKH5	7.8e-87	87.22	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc07g0194861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..113 e-value: 3.7E-75 score: 253.9
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 2..139
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..139
None	No IPR available	CDD	cd01647	RT_LTR	coord: 12..176 e-value: 2.46128E-85 score: 247.123
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 53..177 e-value: 3.7E-75 score: 253.9
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 28..176 e-value: 5.9E-25 score: 88.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 9..187 score: 13.200906
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0194861.1	Cmc07g0194861.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity