Cmc07g0194201 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0194201
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 16631906 .. 16632535 (+)
RNA-Seq Expression	Cmc07g0194201
Synteny	Cmc07g0194201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCCTCCAGCGTTAGCTGAACTTCGAAAACAGTTAGATGAGTTACTGAATGCAGGGTTTATTGGGCCTGCAAAAGCTCCGTATGGGGCCTCAGTTCTTTTCCAGAAGAAGAAGGATGGGAGTTTACGATTGTGCATCGACTATCGCGTCTTGAACAAGCTCACGGTTCGCAATAAATATCCACTTCCCATAATTATTGATTTGTTTGATCGCTTACATGAGGTGAAGTAATTTTCGAAATTGGACTTGCGGTCGGGATACTACTAAGTGAGAATTGCAGAGGGAGATGAGCCAAAGACAACATGTGTCACCAAATATGGAGCATTTGAGTTCCTCGTAATGCCATTTGGTCTTACCAATGCCCTTGCAACCTTTTGTACGTTGATGAATCAGGTCTTCCATGAATATCTCGATAAATTTGTAGTGGTCTACCTGGATGATATAGTAGTCTATAGCACAACCATGGAGGACCATAGAGACCACCTTCAAAAGGTTTTCCAAAAATTGAAGGAGAACCAACTGTATGTCAAAATAGAAAAATTGGGATGGCAGAAGGGAAGATTGTTGCGGTACGCGACTGCGCAGTATCGAAATCAGTCTCAGAGTTACGCCCCTTCCTTGGGTTAG

mRNA sequence

ATGACGCCTCCAGCGTTAGCTGAACTTCGAAAACAGTTAGATGAGTTACTGAATGCAGGGTTTATTGGGCCTGCAAAAGCTCCGTATGGGGCCTCAGTTCTTTTCCAGAAGAAGAAGGATGGGAGTTTACGATTGTGCATCGACTATCGCGTCTTGAACAAGCTCACGGGAGATGAGCCAAAGACAACATGTGTCACCAAATATGGAGCATTTGAGTTCCTCGTAATGCCATTTGGTCTTACCAATGCCCTTGCAACCTTTTGTACGTTGATGAATCAGGTCTTCCATGAATATCTCGATAAATTTGTAGTGGTCTACCTGGATGATATAGTAGTCTATAGCACAACCATGGAGGACCATAGAGACCACCTTCAAAAGGTTTTCCAAAAATTGAAGGAGAACCAACTGTATGTCAAAATAGAAAAATTGGGATGGCAGAAGGGAAGATTGTTGCGGTACGCGACTGCGCAGTATCGAAATCAGTCTCAGAGTTACGCCCCTTCCTTGGGTTAG

Coding sequence (CDS)

ATGACGCCTCCAGCGTTAGCTGAACTTCGAAAACAGTTAGATGAGTTACTGAATGCAGGGTTTATTGGGCCTGCAAAAGCTCCGTATGGGGCCTCAGTTCTTTTCCAGAAGAAGAAGGATGGGAGTTTACGATTGTGCATCGACTATCGCGTCTTGAACAAGCTCACGGGAGATGAGCCAAAGACAACATGTGTCACCAAATATGGAGCATTTGAGTTCCTCGTAATGCCATTTGGTCTTACCAATGCCCTTGCAACCTTTTGTACGTTGATGAATCAGGTCTTCCATGAATATCTCGATAAATTTGTAGTGGTCTACCTGGATGATATAGTAGTCTATAGCACAACCATGGAGGACCATAGAGACCACCTTCAAAAGGTTTTCCAAAAATTGAAGGAGAACCAACTGTATGTCAAAATAGAAAAATTGGGATGGCAGAAGGGAAGATTGTTGCGGTACGCGACTGCGCAGTATCGAAATCAGTCTCAGAGTTACGCCCCTTCCTTGGGTTAG

Protein sequence

MTPPALAELRKQLDELLNAGFIGPAKAPYGASVLFQKKKDGSLRLCIDYRVLNKLTGDEPKTTCVTKYGAFEFLVMPFGLTNALATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEDHRDHLQKVFQKLKENQLYVKIEKLGWQKGRLLRYATAQYRNQSQSYAPSLG

Homology

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BLAST of Cmc07g0194201 vs. NCBI nr
Match: KAA0066677.1 (uncharacterized protein E6C27_scaffold271G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 2.7e-64
Identity = 141/225 (62.67%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MTPPALAELRKQLDELLNAGFIGPAKAPYGASVLFQKKKDGSLRLCIDYRVLNKLT---- 60
           M PP LAELRKQLDELLN GFI PAKAPYGA VLFQKKKDGSLRLCIDYR LNKLT    
Sbjct: 610 MAPPELAELRKQLDELLNVGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 669

Query: 61  -----------------------------------GDEPKTTCVTKYGAFEFLVMPFGLT 120
                                              GDEPKTTCVT+YGAFEFLVMPFGLT
Sbjct: 670 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 729

Query: 121 NALATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEDHRDHLQKVFQKLKENQLYVKIE 168
           NA AT CTLMNQVFHEYLDKFVVVYLDDIVVYSTTME+HRDH QKVFQKLKENQLYVK E
Sbjct: 730 NAPATLCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHQQKVFQKLKENQLYVKRE 789

[Close]

BLAST of Cmc07g0194201 vs. NCBI nr
Match: KAA0055406.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa] >TYK22321.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 6.0e-64
Identity = 133/177 (75.14%), Postives = 141/177 (79.66%), Query Frame = 0


Query: 1   MTPPALAELRKQLDELLNAGFIGPAKAPYGASVLFQKKKDGSLRLCIDYRVLNKLT---- 60
           M PP  AEL KQLDELLNAGFI PAKA YGA VLFQKKKDGSLRLCIDYRVLNKLT    
Sbjct: 165 MAPPEFAELWKQLDELLNAGFIRPAKALYGAPVLFQKKKDGSLRLCIDYRVLNKLTYQVR 224

Query: 61  ---GDEPKTTCVTKYGAFEFLVMPFGLTNALATFCTLMNQVFHEYLDKFVVVYLDDIVVY 120
              G EPKTT VT+YGAFEFL+MPFGLTNA  TFCTLMNQVFHEYLDKFVVVYLDDIVVY
Sbjct: 225 IAEGGEPKTTYVTRYGAFEFLLMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVYLDDIVVY 284

Query: 121 STTMEDHRDHLQKVFQKLKENQLYVKIEKLGWQKGRLLRYATAQYRNQSQSYAPSLG 171
           STTME+HRDHLQK             + +L W+KGRLLRYAT Q +NQS+SYAPS G
Sbjct: 285 STTMEEHRDHLQK------------SVAELEWKKGRLLRYATGQCKNQSRSYAPSSG 329

[Close]

BLAST of Cmc07g0194201 vs. NCBI nr
Match: KAA0066680.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.2 bits (648), Expect = 7.9e-64
Identity = 139/225 (61.78%), Postives = 150/225 (66.67%), Query Frame = 0


Query: 1   MTPPALAELRKQLDELLNAGFIGPAKAPYGASVLFQKKKDGSLRLCIDYRVLNKLT---- 60
           M PP LAELRKQLDELLNAGFI P KAPYGA VLFQKKKDGSLRLCIDY  LNKLT    
Sbjct: 1   MAPPELAELRKQLDELLNAGFIRPEKAPYGAPVLFQKKKDGSLRLCIDYHALNKLTVRNK 60

Query: 61  -----------------------------------GDEPKTTCVTKYGAFEFLVMPFGLT 120
                                              GDEPKTTCVT+YGAFEFL+MPFGLT
Sbjct: 61  YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLIMPFGLT 120

Query: 121 NALATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEDHRDHLQKVFQKLKENQLYVKIE 168
           NA +TFCTLMNQVF+EYLDKFVVVYLDDIVVYSTTME+HRDHLQKVFQKLKENQLYVK E
Sbjct: 121 NAPSTFCTLMNQVFYEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 180

[Close]

BLAST of Cmc07g0194201 vs. NCBI nr
Match: TYK28653.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 253.8 bits (647), Expect = 1.0e-63
Identity = 134/189 (70.90%), Postives = 139/189 (73.54%), Query Frame = 0


Query: 1   MTPPALAELRKQLDELLNAGFIGPAKAPYGASVLFQKKKDGSLRLCIDYRVLNKLT---- 60
           M PP LAELRKQLDELLNAGFI PAKAPYGA VLFQKKKDGSLRLCIDYR LNKLT    
Sbjct: 130 MAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 189

Query: 61  -----------------------------------GDEPKTTCVTKYGAFEFLVMPFGLT 120
                                              GDEPKTTCVT+YGAFEFLVMPFGLT
Sbjct: 190 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 249

Query: 121 NALATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEDHRDHLQKVFQKLKENQLYVKIE 151
           NA ATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTME+HRDHLQKVFQKLKENQLYVK E
Sbjct: 250 NAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 309

[Close]

BLAST of Cmc07g0194201 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 253.8 bits (647), Expect = 1.0e-63
Identity = 134/189 (70.90%), Postives = 139/189 (73.54%), Query Frame = 0


Query: 1   MTPPALAELRKQLDELLNAGFIGPAKAPYGASVLFQKKKDGSLRLCIDYRVLNKLT---- 60
           M PP LAELRKQLDELLNAGFI PAKAPYGA VLFQKKKDGSLRLCIDYR LNKLT    
Sbjct: 644 MAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 703

Query: 61  -----------------------------------GDEPKTTCVTKYGAFEFLVMPFGLT 120
                                              GDEPKTTCVT+YGAFEFLVMPFGLT
Sbjct: 704 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 763

Query: 121 NALATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEDHRDHLQKVFQKLKENQLYVKIE 151
           NA ATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTME+HRDHLQKVFQKLKENQLYVK E
Sbjct: 764 NAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 823

[Close]

BLAST of Cmc07g0194201 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.5e-25
Identity = 64/128 (50.00%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 42  SLRLCIDYRVLNKLT---------------------------------------GDEPKT 101
           SLR+CIDYR L K+T                                       GDEPKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 102 TCVTKYGAFEFLVMPFGLTNALATFCTLMNQVFHEYLDKFVVVYLDDIVV---YSTTMED 128
           TCVT+YG+FEF VMPFGLTNALATFC LMN V +EYLD FVVVYLDD+VV   YS ++ +
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124

[Close]

BLAST of Cmc07g0194201 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-21
Identity = 63/174 (36.21%), Postives = 87/174 (50.00%), Query Frame = 0


Query: 8   ELRKQLDELLNAGFIGPAKAPYGASVLFQKKKDGSLRLCIDYRVLNKLTGDEP------- 67
           E+ K + +LL+  FI P+K+P  + V+   KKDG+ RLC+DYR LNK T  +P       
Sbjct: 611 EINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRID 670

Query: 68  --------------------------------KTTCVTKYGAFEFLVMPFGLTNALATFC 127
                                           KT  VT  G +E+ VMPFGL NA +TF 
Sbjct: 671 NLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFA 730

Query: 128 TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEDHRDHLQKVFQKLKENQLYVKIEK 143
             M   F +   +FV VYLDDI+++S + E+H  HL  V ++LK   L VK +K
Sbjct: 731 RYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKK 782

[Close]

BLAST of Cmc07g0194201 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-21
Identity = 63/174 (36.21%), Postives = 87/174 (50.00%), Query Frame = 0


Query: 8   ELRKQLDELLNAGFIGPAKAPYGASVLFQKKKDGSLRLCIDYRVLNKLTGDEP------- 67
           E+ K + +LL+  FI P+K+P  + V+   KKDG+ RLC+DYR LNK T  +P       
Sbjct: 637 EINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRID 696

Query: 68  --------------------------------KTTCVTKYGAFEFLVMPFGLTNALATFC 127
                                           KT  VT  G +E+ VMPFGL NA +TF 
Sbjct: 697 NLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFA 756

Query: 128 TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEDHRDHLQKVFQKLKENQLYVKIEK 143
             M   F +   +FV VYLDDI+++S + E+H  HL  V ++LK   L VK +K
Sbjct: 757 RYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKK 808

[Close]

BLAST of Cmc07g0194201 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-18
Identity = 61/184 (33.15%), Postives = 93/184 (50.54%), Query Frame = 0


Query: 8   ELRKQLDELLNAGFIGPAKAPYGASV-LFQKKKDGS----LRLCIDYRVLNKLT-GDE-- 67
           E+  Q+ ++LN G I  + +PY + + +  KK+D S     R+ IDYR LN++T GD   
Sbjct: 222 EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHP 281

Query: 68  ------------------------------------PKTTCVTKYGAFEFLVMPFGLTNA 127
                                                KT   TK+G +E+L MPFGL NA
Sbjct: 282 IPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNA 341

Query: 128 LATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEDHRDHLQKVFQKLKENQLYVKIEKL 148
            ATF   MN +    L+K  +VYLDDI+V+ST++++H   L  VF+KL +  L ++++K 
Sbjct: 342 PATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKC 401

[Close]

BLAST of Cmc07g0194201 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.4e-17
Identity = 61/184 (33.15%), Postives = 90/184 (48.91%), Query Frame = 0


Query: 8   ELRKQLDELLNAGFIGPAKAPYGASV-LFQKKKDGS----LRLCIDYRVLNKLT------ 67
           E+  Q+ E+LN G I  + +PY +   +  KK D S     R+ IDYR LN++T      
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  ------------------------------GDE---PKTTCVTKYGAFEFLVMPFGLTNA 127
                                          DE    KT   TK G +E+L MPFGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 LATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEDHRDHLQKVFQKLKENQLYVKIEKL 148
            ATF   MN +    L+K  +VYLDDI+++ST++ +H + +Q VF KL +  L ++++K 
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

[Close]

BLAST of Cmc07g0194201 vs. ExPASy TrEMBL
Match: A0A5A7VHT2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G00020 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.3e-64
Identity = 141/225 (62.67%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MTPPALAELRKQLDELLNAGFIGPAKAPYGASVLFQKKKDGSLRLCIDYRVLNKLT---- 60
           M PP LAELRKQLDELLN GFI PAKAPYGA VLFQKKKDGSLRLCIDYR LNKLT    
Sbjct: 610 MAPPELAELRKQLDELLNVGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 669

Query: 61  -----------------------------------GDEPKTTCVTKYGAFEFLVMPFGLT 120
                                              GDEPKTTCVT+YGAFEFLVMPFGLT
Sbjct: 670 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 729

Query: 121 NALATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEDHRDHLQKVFQKLKENQLYVKIE 168
           NA AT CTLMNQVFHEYLDKFVVVYLDDIVVYSTTME+HRDH QKVFQKLKENQLYVK E
Sbjct: 730 NAPATLCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHQQKVFQKLKENQLYVKRE 789

[Close]

BLAST of Cmc07g0194201 vs. ExPASy TrEMBL
Match: A0A5D3DF56 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00310 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.9e-64
Identity = 133/177 (75.14%), Postives = 141/177 (79.66%), Query Frame = 0


Query: 1   MTPPALAELRKQLDELLNAGFIGPAKAPYGASVLFQKKKDGSLRLCIDYRVLNKLT---- 60
           M PP  AEL KQLDELLNAGFI PAKA YGA VLFQKKKDGSLRLCIDYRVLNKLT    
Sbjct: 165 MAPPEFAELWKQLDELLNAGFIRPAKALYGAPVLFQKKKDGSLRLCIDYRVLNKLTYQVR 224

Query: 61  ---GDEPKTTCVTKYGAFEFLVMPFGLTNALATFCTLMNQVFHEYLDKFVVVYLDDIVVY 120
              G EPKTT VT+YGAFEFL+MPFGLTNA  TFCTLMNQVFHEYLDKFVVVYLDDIVVY
Sbjct: 225 IAEGGEPKTTYVTRYGAFEFLLMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVYLDDIVVY 284

Query: 121 STTMEDHRDHLQKVFQKLKENQLYVKIEKLGWQKGRLLRYATAQYRNQSQSYAPSLG 171
           STTME+HRDHLQK             + +L W+KGRLLRYAT Q +NQS+SYAPS G
Sbjct: 285 STTMEEHRDHLQK------------SVAELEWKKGRLLRYATGQCKNQSRSYAPSSG 329

[Close]

BLAST of Cmc07g0194201 vs. ExPASy TrEMBL
Match: A0A5A7VHL6 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G00080 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.8e-64
Identity = 139/225 (61.78%), Postives = 150/225 (66.67%), Query Frame = 0


Query: 1   MTPPALAELRKQLDELLNAGFIGPAKAPYGASVLFQKKKDGSLRLCIDYRVLNKLT---- 60
           M PP LAELRKQLDELLNAGFI P KAPYGA VLFQKKKDGSLRLCIDY  LNKLT    
Sbjct: 1   MAPPELAELRKQLDELLNAGFIRPEKAPYGAPVLFQKKKDGSLRLCIDYHALNKLTVRNK 60

Query: 61  -----------------------------------GDEPKTTCVTKYGAFEFLVMPFGLT 120
                                              GDEPKTTCVT+YGAFEFL+MPFGLT
Sbjct: 61  YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLIMPFGLT 120

Query: 121 NALATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEDHRDHLQKVFQKLKENQLYVKIE 168
           NA +TFCTLMNQVF+EYLDKFVVVYLDDIVVYSTTME+HRDHLQKVFQKLKENQLYVK E
Sbjct: 121 NAPSTFCTLMNQVFYEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 180

[Close]

BLAST of Cmc07g0194201 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 5.0e-64
Identity = 134/189 (70.90%), Postives = 139/189 (73.54%), Query Frame = 0


Query: 1   MTPPALAELRKQLDELLNAGFIGPAKAPYGASVLFQKKKDGSLRLCIDYRVLNKLT---- 60
           M PP LAELRKQLDELLNAGFI PAKAPYGA VLFQKKKDGSLRLCIDYR LNKLT    
Sbjct: 644 MAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 703

Query: 61  -----------------------------------GDEPKTTCVTKYGAFEFLVMPFGLT 120
                                              GDEPKTTCVT+YGAFEFLVMPFGLT
Sbjct: 704 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 763

Query: 121 NALATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEDHRDHLQKVFQKLKENQLYVKIE 151
           NA ATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTME+HRDHLQKVFQKLKENQLYVK E
Sbjct: 764 NAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 823

[Close]

BLAST of Cmc07g0194201 vs. ExPASy TrEMBL
Match: A0A5D3DY42 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold165G00110 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 5.0e-64
Identity = 134/189 (70.90%), Postives = 139/189 (73.54%), Query Frame = 0


Query: 1   MTPPALAELRKQLDELLNAGFIGPAKAPYGASVLFQKKKDGSLRLCIDYRVLNKLT---- 60
           M PP LAELRKQLDELLNAGFI PAKAPYGA VLFQKKKDGSLRLCIDYR LNKLT    
Sbjct: 130 MAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 189

Query: 61  -----------------------------------GDEPKTTCVTKYGAFEFLVMPFGLT 120
                                              GDEPKTTCVT+YGAFEFLVMPFGLT
Sbjct: 190 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 249

Query: 121 NALATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEDHRDHLQKVFQKLKENQLYVKIE 151
           NA ATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTME+HRDHLQKVFQKLKENQLYVK E
Sbjct: 250 NAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 309

The following BLAST results are available for this feature:

BLAST of Cmc07g0194201 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066677.1	2.7e-64	62.67	uncharacterized protein E6C27_scaffold271G00020 [Cucumis melo var. makuwa]	[more]
KAA0055406.1	6.0e-64	75.14	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa] >TYK22321.1 ...	[more]
KAA0066680.1	7.9e-64	61.78	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]	[more]
TYK28653.1	1.0e-63	70.90	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK07954.1	1.0e-63	70.90	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0194201 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	7.5e-25	50.00	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	1.7e-21	36.21	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.7e-21	36.21	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P04323	1.4e-18	33.15	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	4.4e-17	33.15	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]

BLAST of Cmc07g0194201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VHT2	1.3e-64	62.67	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DF56	2.9e-64	75.14	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7VHL6	3.8e-64	61.78	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C9P8	5.0e-64	70.90	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5D3DY42	5.0e-64	70.90	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16...	[more]

BLAST of Cmc07g0194201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 67..143 e-value: 5.4E-15 score: 55.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 83..145 e-value: 6.0E-29 score: 102.8
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..56 e-value: 1.2E-14 score: 56.1 coord: 58..82 e-value: 6.0E-29 score: 102.8
None	No IPR available	PANTHER	PTHR15503:SF11	RETROTRANSPOSON GAG-LIKE PROTEIN 6	coord: 57..139
None	No IPR available	PANTHER	PTHR15503:SF11	RETROTRANSPOSON GAG-LIKE PROTEIN 6	coord: 7..56
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..153 e-value: 6.98003E-53 score: 164.306
IPR032567	LDOC1-related	PANTHER	PTHR15503	LDOC1 RELATED	coord: 7..56
IPR032567	LDOC1-related	PANTHER	PTHR15503	LDOC1 RELATED	coord: 57..139
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0194201.1	Cmc07g0194201.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity