Cmc07g0194061 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0194061
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 16345368 .. 16346291 (+)
RNA-Seq Expression	Cmc07g0194061
Synteny	Cmc07g0194061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACTCAAGGTTGGAACGATAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTATATATTTGTTCGGCTAAGCTTGAAAACAACTTGTATGTATTAAGATCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTACTAATACTCAAAATAAAATGCAAAAATTTTTTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTAGATCGGATCGGAAGATTGGTAAAGAATGGACTTCTAAACAAGTTAAAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAATGCGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCCCCGTGGTCCGAAGAATGTAAAAGCTAGAGAGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATGTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAAAATGAAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATAGTGTATCAGAAAGGAGAAATAGAACCTTGTTAGACATGGTTTGTTCAATGATGAGTTACGCTCAATTGCCTAGCTCGTTTGGGGATATGCAGTAG

mRNA sequence

ATGACACTCAAGGTTGGAACGATAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTATATATTTGTTCGGCTAAGCTTGAAAACAACTTGTATGTATTAAGATCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTACTAATACTCAAAATAAAATGCAAAAATTTTTTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTAGATCGGATCGGAAGATTGGTAAAGAATGGACTTCTAAACAAGTTAAAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAATGCGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCCCCGTGGTCCGAAGAATGTAAAAGCTAGAGAGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATGTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAAAATGAAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATAGTGTATCAGAAAGGAGAAATAGAACCTTGTTAGACATGGTTTGTTCAATGATGAGTTACGCTCAATTGCCTAGCTCGTTTGGGGATATGCAGTAG

Coding sequence (CDS)

ATGACACTCAAGGTTGGAACGATAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTATATATTTGTTCGGCTAAGCTTGAAAACAACTTGTATGTATTAAGATCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTACTAATACTCAAAATAAAATGCAAAAATTTTTTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTAGATCGGATCGGAAGATTGGTAAAGAATGGACTTCTAAACAAGTTAAAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAATGCGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCCCCGTGGTCCGAAGAATGTAAAAGCTAGAGAGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATGTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAAAATGAAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATAGTGTATCAGAAAGGAGAAATAGAACCTTGTTAGACATGGTTTGTTCAATGATGAGTTACGCTCAATTGCCTAGCTCGTTTGGGGATATGCAGTAG

Protein sequence

MTLKVGTIDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVYICSAKLENNLYVLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTMRPFTGKGYRAKEPLELIHSDPRGPKNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKILRCDRGGEYMDLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLPSSFGDMQ

Homology

[Close]

BLAST of Cmc07g0194061 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 555.1 bits (1429), Expect = 3.9e-154
Identity = 282/303 (93.07%), Postives = 285/303 (94.06%), Query Frame = 0


Query: 1   MTLKVGTIDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGT DVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVYICSAKLENNLYVLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWH 120
           NEAFI KNGV+ICSAKLENNLYVLR NEAKAVLNHEMFRT NTQNK Q+  PNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTMRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRIGRLVKNGLLNKLKD SLPPCESCLEGKMT RPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DPRGPKNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           D  GP NVKAR GFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRCDRGGEYMDLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLP 300
           LR DRGGEYMDLRFQDYMIE+ IQSQLSAPGTPQQN VSERRNRTLLDMV SMMSYAQLP
Sbjct: 473 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 SSF 304
           SSF
Sbjct: 533 SSF 535

[Close]

BLAST of Cmc07g0194061 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 546.2 bits (1406), Expect = 1.8e-151
Identity = 278/303 (91.75%), Postives = 282/303 (93.07%), Query Frame = 0


Query: 1   MTLKVGTIDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGT DVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVYICSAKLENNLYVLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWH 120
           NEAFI KNGV+ICSAKLENNLYVLR NEAKAVLNHEMFRT NTQNK Q+  PNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTMRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRIGRLVK+GLLNKLKD SLPPCESCLEGKMT RPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DPRGPKNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           D  GP NVKAR  FEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRCDRGGEYMDLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLP 300
            R DRGGEYMDL FQDYMIE+ IQSQLSAPGTPQQN VSERRNRTLLDMV SMMSYAQLP
Sbjct: 473 FRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 SSF 304
           SSF
Sbjct: 533 SSF 535

[Close]

BLAST of Cmc07g0194061 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 537.3 bits (1383), Expect = 8.4e-149
Identity = 272/303 (89.77%), Postives = 280/303 (92.41%), Query Frame = 0


Query: 1   MTLKVGTIDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           M LKVGT DVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSI+FSM
Sbjct: 205 MILKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSM 264

Query: 61  NEAFISKNGVYICSAKLENNLYVLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWH 120
           NEAFISKNGV+ICS KLE+NLYVL+ NE KAVLNHEMFRT NTQNK Q+   NNNTYLWH
Sbjct: 265 NEAFISKNGVHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWH 324

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTMRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRIGRLVKNGLLNKL+DDSLPPCESCLEGKMT RPFTGKGYRAKEPLELIHS
Sbjct: 325 LRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 384

Query: 181 DPRGPKNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           D  GP NVKA  GFEYFISFIDDYS YGYLYL+EHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 385 DLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKI 444

Query: 241 LRCDRGGEYMDLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLP 300
           LR DRGGEYMDLRFQDYMIE+ IQSQLSAPGTPQQN VSERRNRTLLDMV SMMSY QLP
Sbjct: 445 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYVQLP 504

Query: 301 SSF 304
           SSF
Sbjct: 505 SSF 507

[Close]

BLAST of Cmc07g0194061 vs. NCBI nr
Match: KAA0067938.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 526.6 bits (1355), Expect = 1.5e-145
Identity = 272/303 (89.77%), Postives = 275/303 (90.76%), Query Frame = 0


Query: 1   MTLKVGTIDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTL VGT DVISARAVGD KLFFG KFMFLENLYIVPKIKRNLV VSCLIEHMYSINFSM
Sbjct: 208 MTLMVGTGDVISARAVGDVKLFFGIKFMFLENLYIVPKIKRNLVFVSCLIEHMYSINFSM 267

Query: 61  NEAFISKNGVYICSAKLENNLYVLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWH 120
           NEAFISKNG     AKLE+NLYVLR NEAKAVLNHEMFRT NTQNK Q+  PNNNTYLWH
Sbjct: 268 NEAFISKNG-----AKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 327

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTMRPFTGKGYRAKEPLELIHS 180
           LRL HINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMT RPFTGK YRAKEPLELIHS
Sbjct: 328 LRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKDYRAKEPLELIHS 387

Query: 181 DPRGPKNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           D  GP NVKAR GFEYFISFIDDYSRYGYLYLMEHK EALEKFKEYK EVENLLSKKIKI
Sbjct: 388 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKYEALEKFKEYKTEVENLLSKKIKI 447

Query: 241 LRCDRGGEYMDLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLP 300
           LR DRGGEYMDLRFQDYMIE+ IQSQLSAPGTPQQN VSERRNRTLLDMV SMMSYAQLP
Sbjct: 448 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 505

Query: 301 SSF 304
           SSF
Sbjct: 508 SSF 505

[Close]

BLAST of Cmc07g0194061 vs. NCBI nr
Match: KAA0046415.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 437.6 bits (1124), Expect = 9.0e-119
Identity = 220/303 (72.61%), Postives = 253/303 (83.50%), Query Frame = 0


Query: 1   MTLKVGTIDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MT++VGT  VISA AVG  +L     F+ LEN+Y+VP +KRNL+SV CL+E  YS+ F++
Sbjct: 336 MTMRVGTGHVISAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNV 395

Query: 61  NEAFISKNGVYICSAKLENNLYVLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWH 120
           N+ FI KNGV ICSAKLENNLYVLRS  +KA+LN EMF+T  TQNK  K  P  N +LWH
Sbjct: 396 NKVFIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWH 455

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTMRPFTGKGYRAKEPLELIHS 180
           LRLGHINL+RI RLVKNGLL++L+++SLP CESCLEGKMT RPFTGKG+RAKEPLEL+HS
Sbjct: 456 LRLGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHS 515

Query: 181 DPRGPKNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           D  GP NVKAR GFEYFI+F DDYSRYGY+YLM+HKSEALEKFKEYKAEVEN LSK IK 
Sbjct: 516 DLCGPMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKT 575

Query: 241 LRCDRGGEYMDLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLP 300
            R DRGGEYMDL+FQ+Y++E  I SQLSAPGTPQQN VSERRNRTLLDMV SMMSYA LP
Sbjct: 576 FRSDRGGEYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLP 635

Query: 301 SSF 304
           +SF
Sbjct: 636 NSF 638

[Close]

BLAST of Cmc07g0194061 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.9e-35
Identity = 92/303 (30.36%), Postives = 156/303 (51.49%), Query Frame = 0


Query: 2   TLKVGTIDVISARAVGDAKLFFG-NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 61
           T+K+G         +GD  +       + L+++  VP ++ NL+S   L    Y   F+ 
Sbjct: 321 TVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFAN 380

Query: 62  NEAFISKNGVYICSAKLENNLYVLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWH 121
            +  ++K  + I        LY   +   +  LN         Q+++       +  LWH
Sbjct: 381 QKWRLTKGSLVIAKGVARGTLYRTNAEICQGELN-------AAQDEI-------SVDLWH 440

Query: 122 LRLGHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTMRPFTGKGYRAKEPLELIHS 181
            R+GH++   +  L K  L++  K  ++ PC+ CL GK     F     R    L+L++S
Sbjct: 441 KRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYS 500

Query: 182 DPRGPKNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 241
           D  GP  +++  G +YF++FIDD SR  ++Y+++ K +  + F+++ A VE    +K+K 
Sbjct: 501 DVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKR 560

Query: 242 LRCDRGGEYMDLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLP 301
           LR D GGEY    F++Y   + I+ + + PGTPQ N V+ER NRT+++ V SM+  A+LP
Sbjct: 561 LRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLP 609

Query: 302 SSF 304
            SF
Sbjct: 621 KSF 609

[Close]

BLAST of Cmc07g0194061 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 121.7 bits (304), Expect = 1.4e-26
Identity = 90/283 (31.80%), Postives = 139/283 (49.12%), Query Frame = 0


Query: 30  LENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVYIC-SAKLENNLYVLRSNE 89
           LE++    +   NL+SV  L E   SI F  +   ISKNG+ +  ++ + NN+       
Sbjct: 345 LEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNV------- 404

Query: 90  AKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWHLRLGHIN------LDRIGRLVKNGLLNK 149
              V+N + + + N ++K       NN  LWH R GHI+      + R        LLN 
Sbjct: 405 --PVINFQAY-SINAKHK-------NNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNN 464

Query: 150 LKDDSLPPCESCLEGKMTMRPFTGKGYRA--KEPLELIHSDPRGPKNVKAREGFEYFISF 209
           L + S   CE CL GK    PF     +   K PL ++HSD  GP      +   YF+ F
Sbjct: 465 L-ELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIF 524

Query: 210 IDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKILRCDRGGEYMDLRFQDYMIE 269
           +D ++ Y   YL+++KS+    F+++ A+ E   + K+  L  D G EY+    + + ++
Sbjct: 525 VDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVK 584

Query: 270 NEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLPSSF 304
             I   L+ P TPQ N VSER  RT+ +   +M+S A+L  SF
Sbjct: 585 KGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSF 609

[Close]

BLAST of Cmc07g0194061 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.0e-24
Identity = 82/293 (27.99%), Postives = 146/293 (49.83%), Query Frame = 0


Query: 17  GDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIE-HMYSINFSMNEAFIS--KNGVYIC 76
           G A L   ++ + L  +  VP I +NL+SV  L   +  S+ F      +     GV + 
Sbjct: 353 GSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLL 412

Query: 77  SAKLENNLY--VLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWHLRLGHINLDRI 136
             K ++ LY   + S++A ++      + T++               WH RLGH +L  +
Sbjct: 413 QGKTKDELYEWPIASSQAVSMFASPCSKATHSS--------------WHSRLGHPSLAIL 472

Query: 137 GRLVKNGLLNKLK-DDSLPPCESCLEGKMTMRPFTGKGYRAKEPLELIHSDPRGPKNVKA 196
             ++ N  L  L     L  C  C   K    PF+     + +PLE I+SD      + +
Sbjct: 473 NSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDV-WSSPILS 532

Query: 197 REGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKILRCDRGGEYM 256
            + + Y++ F+D ++RY +LY ++ KS+  + F  +K+ VEN    +I  L  D GGE++
Sbjct: 533 IDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFV 592

Query: 257 DLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLPSSF 304
            LR  DY+ ++ I    S P TP+ N +SER++R +++M  +++S+A +P ++
Sbjct: 593 VLR--DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTY 628

[Close]

BLAST of Cmc07g0194061 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-21
Identity = 75/296 (25.34%), Postives = 138/296 (46.62%), Query Frame = 0


Query: 17  GDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIE------HMYSINFSMNEAFISKNGV 76
           G   L   ++ + L N+  VP I +NL+SV  L          +  +F + +      GV
Sbjct: 374 GSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDL---NTGV 433

Query: 77  YICSAKLENNLY--VLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWHLRLGHINL 136
            +   K ++ LY   + S++  ++      + T++               WH RLGH   
Sbjct: 434 PLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSS--------------WHARLGHPAP 493

Query: 137 DRIGRLVKNGLLNKLK-DDSLPPCESCLEGKMTMRPFTGKGYRAKEPLELIHSDPRGPKN 196
             +  ++ N  L+ L        C  CL  K    PF+     +  PLE I+SD      
Sbjct: 494 SILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDV-WSSP 553

Query: 197 VKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKILRCDRGG 256
           + + + + Y++ F+D ++RY +LY ++ KS+  E F  +K  +EN    +I     D GG
Sbjct: 554 ILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGG 613

Query: 257 EYMDLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLPSSF 304
           E++ L   +Y  ++ I    S P TP+ N +SER++R +++   +++S+A +P ++
Sbjct: 614 EFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTY 649

[Close]

BLAST of Cmc07g0194061 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-14
Identity = 78/306 (25.49%), Postives = 131/306 (42.81%), Query Frame = 0


Query: 11  ISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGV 70
           I   A+G+    F N           P I  +L+S+S L     +  F+ N      +G 
Sbjct: 490 IPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRN-TLERSDGT 549

Query: 71  YICSAKLENNLYVLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTY-LWHLRLGHINLD 130
            +       + Y L  ++   + +H    T N  NK +    N   Y L H  LGH N  
Sbjct: 550 VLAPIVKHGDFYWL--SKKYLIPSHISKLTINNVNKSKSV--NKYPYPLIHRMLGHANFR 609

Query: 131 RIGRLVKNGLLNKLKDDSLP-------PCESCLEGKMTMRPFTGKGYRAK-----EPLEL 190
            I + +K   +  LK+  +         C  CL GK T      KG R K     EP + 
Sbjct: 610 SIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHV-KGSRLKYQESYEPFQY 669

Query: 191 IHSDPRGPKNVKAREGFEYFISFIDDYSRYGYLYLMEHKSE--ALEKFKEYKAEVENLLS 250
           +H+D  GP +   +    YFISF D+ +R+ ++Y +  + E   L  F    A ++N  +
Sbjct: 670 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFN 729

Query: 251 KKIKILRCDRGGEYMDLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMS 302
            ++ +++ DRG EY +     +     I +  +     + + V+ER NRTLL+   +++ 
Sbjct: 730 ARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLH 789

[Close]

BLAST of Cmc07g0194061 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 555.1 bits (1429), Expect = 1.9e-154
Identity = 282/303 (93.07%), Postives = 285/303 (94.06%), Query Frame = 0


Query: 1   MTLKVGTIDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGT DVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVYICSAKLENNLYVLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWH 120
           NEAFI KNGV+ICSAKLENNLYVLR NEAKAVLNHEMFRT NTQNK Q+  PNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTMRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRIGRLVKNGLLNKLKD SLPPCESCLEGKMT RPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DPRGPKNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           D  GP NVKAR GFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRCDRGGEYMDLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLP 300
           LR DRGGEYMDLRFQDYMIE+ IQSQLSAPGTPQQN VSERRNRTLLDMV SMMSYAQLP
Sbjct: 473 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 SSF 304
           SSF
Sbjct: 533 SSF 535

[Close]

BLAST of Cmc07g0194061 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 8.7e-152
Identity = 278/303 (91.75%), Postives = 282/303 (93.07%), Query Frame = 0


Query: 1   MTLKVGTIDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGT DVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVYICSAKLENNLYVLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWH 120
           NEAFI KNGV+ICSAKLENNLYVLR NEAKAVLNHEMFRT NTQNK Q+  PNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTMRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRIGRLVK+GLLNKLKD SLPPCESCLEGKMT RPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DPRGPKNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           D  GP NVKAR  FEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRCDRGGEYMDLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLP 300
            R DRGGEYMDL FQDYMIE+ IQSQLSAPGTPQQN VSERRNRTLLDMV SMMSYAQLP
Sbjct: 473 FRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 SSF 304
           SSF
Sbjct: 533 SSF 535

[Close]

BLAST of Cmc07g0194061 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 537.3 bits (1383), Expect = 4.1e-149
Identity = 272/303 (89.77%), Postives = 280/303 (92.41%), Query Frame = 0


Query: 1   MTLKVGTIDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           M LKVGT DVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSI+FSM
Sbjct: 205 MILKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSM 264

Query: 61  NEAFISKNGVYICSAKLENNLYVLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWH 120
           NEAFISKNGV+ICS KLE+NLYVL+ NE KAVLNHEMFRT NTQNK Q+   NNNTYLWH
Sbjct: 265 NEAFISKNGVHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWH 324

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTMRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRIGRLVKNGLLNKL+DDSLPPCESCLEGKMT RPFTGKGYRAKEPLELIHS
Sbjct: 325 LRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 384

Query: 181 DPRGPKNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           D  GP NVKA  GFEYFISFIDDYS YGYLYL+EHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 385 DLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKI 444

Query: 241 LRCDRGGEYMDLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLP 300
           LR DRGGEYMDLRFQDYMIE+ IQSQLSAPGTPQQN VSERRNRTLLDMV SMMSY QLP
Sbjct: 445 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYVQLP 504

Query: 301 SSF 304
           SSF
Sbjct: 505 SSF 507

[Close]

BLAST of Cmc07g0194061 vs. ExPASy TrEMBL
Match: A0A5A7VJG3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001110 PE=4 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 7.2e-146
Identity = 272/303 (89.77%), Postives = 275/303 (90.76%), Query Frame = 0


Query: 1   MTLKVGTIDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTL VGT DVISARAVGD KLFFG KFMFLENLYIVPKIKRNLV VSCLIEHMYSINFSM
Sbjct: 208 MTLMVGTGDVISARAVGDVKLFFGIKFMFLENLYIVPKIKRNLVFVSCLIEHMYSINFSM 267

Query: 61  NEAFISKNGVYICSAKLENNLYVLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWH 120
           NEAFISKNG     AKLE+NLYVLR NEAKAVLNHEMFRT NTQNK Q+  PNNNTYLWH
Sbjct: 268 NEAFISKNG-----AKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 327

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTMRPFTGKGYRAKEPLELIHS 180
           LRL HINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMT RPFTGK YRAKEPLELIHS
Sbjct: 328 LRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKDYRAKEPLELIHS 387

Query: 181 DPRGPKNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           D  GP NVKAR GFEYFISFIDDYSRYGYLYLMEHK EALEKFKEYK EVENLLSKKIKI
Sbjct: 388 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKYEALEKFKEYKTEVENLLSKKIKI 447

Query: 241 LRCDRGGEYMDLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLP 300
           LR DRGGEYMDLRFQDYMIE+ IQSQLSAPGTPQQN VSERRNRTLLDMV SMMSYAQLP
Sbjct: 448 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 505

Query: 301 SSF 304
           SSF
Sbjct: 508 SSF 505

[Close]

BLAST of Cmc07g0194061 vs. ExPASy TrEMBL
Match: A0A5A7TYF5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001600 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 4.4e-119
Identity = 220/303 (72.61%), Postives = 253/303 (83.50%), Query Frame = 0


Query: 1   MTLKVGTIDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MT++VGT  VISA AVG  +L     F+ LEN+Y+VP +KRNL+SV CL+E  YS+ F++
Sbjct: 336 MTMRVGTGHVISAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNV 395

Query: 61  NEAFISKNGVYICSAKLENNLYVLRSNEAKAVLNHEMFRTTNTQNKMQKFFPNNNTYLWH 120
           N+ FI KNGV ICSAKLENNLYVLRS  +KA+LN EMF+T  TQNK  K  P  N +LWH
Sbjct: 396 NKVFIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWH 455

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTMRPFTGKGYRAKEPLELIHS 180
           LRLGHINL+RI RLVKNGLL++L+++SLP CESCLEGKMT RPFTGKG+RAKEPLEL+HS
Sbjct: 456 LRLGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHS 515

Query: 181 DPRGPKNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           D  GP NVKAR GFEYFI+F DDYSRYGY+YLM+HKSEALEKFKEYKAEVEN LSK IK 
Sbjct: 516 DLCGPMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKT 575

Query: 241 LRCDRGGEYMDLRFQDYMIENEIQSQLSAPGTPQQNSVSERRNRTLLDMVCSMMSYAQLP 300
            R DRGGEYMDL+FQ+Y++E  I SQLSAPGTPQQN VSERRNRTLLDMV SMMSYA LP
Sbjct: 576 FRSDRGGEYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLP 635

Query: 301 SSF 304
           +SF
Sbjct: 636 NSF 638

[Close]

BLAST of Cmc07g0194061 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 56.2 bits (134), Expect = 5.3e-08
Identity = 29/75 (38.67%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 114 NNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTMRPFTGKGYRAKE 173
           + T LWH RL H++   +  LVK G L+  K  SL  CE C+ GK     F+   +  K 
Sbjct: 67  DETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKN 126

Query: 174 PLELIHSDPRGPKNV 189
           PL+ +HSD  G  +V
Sbjct: 127 PLDYVHSDLWGAPSV 141

The following BLAST results are available for this feature:

BLAST of Cmc07g0194061 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	3.9e-154	93.07	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	1.8e-151	91.75	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060534.1	8.4e-149	89.77	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0067938.1	1.5e-145	89.77	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0046415.1	9.0e-119	72.61	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0194061 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.9e-35	30.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.4e-26	31.80	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.0e-24	27.99	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.4e-21	25.34	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	1.3e-14	25.49	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc07g0194061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	1.9e-154	93.07	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7T2V9	8.7e-152	91.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3BNE1	4.1e-149	89.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7VJG3	7.2e-146	89.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0011...	[more]
A0A5A7TYF5	4.4e-119	72.61	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0016...	[more]

BLAST of Cmc07g0194061 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	5.3e-08	38.67	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 216..236
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 169..258
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 169..258
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 172..273 e-value: 7.4E-9 score: 35.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 170..307 score: 17.811752
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 167..305 e-value: 1.9E-25 score: 91.3
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 80..159 e-value: 2.9E-14 score: 52.7
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 169..298

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0194061.1	Cmc07g0194061.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding