Cmc07g0194031 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0194031
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 16335894 .. 16336271 (+)
RNA-Seq Expression	Cmc07g0194031
Synteny	Cmc07g0194031

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAAAAGATCTTTTACTGGAAAAGATCTTAGAGCCAAAACATCTTTAGAGCTCGTACGTTCGAACTTATGTGGACCAATGAATGTCAAAGCTCGGGGAGGATATAAATATTTCATTAGTTTTATTGATGATTATTCAAGGTATGGTCATGTTTACCTAATTCAGAACAAGTTTGATTCTTTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAAAATGAATTAGGTAAAACAATAAAGGCACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTGCGATTCCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAGAACGGTGTATCAAAAAGAAGAAACTGA

mRNA sequence

ATGACCAAAAGATCTTTTACTGGAAAAGATCTTAGAGCCAAAACATCTTTAGAGCTCGTACGTTCGAACTTATGTGGACCAATGAATGTCAAAGCTCGGGGAGGATATAAATATTTCATTAGTTTTATTGATGATTATTCAAGGTATGGTCATGTTTACCTAATTCAGAACAAGTTTGATTCTTTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAAAATGAATTAGGTAAAACAATAAAGGCACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTGCGATTCCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAGAACGGTGTATCAAAAAGAAGAAACTGA

Coding sequence (CDS)

ATGACCAAAAGATCTTTTACTGGAAAAGATCTTAGAGCCAAAACATCTTTAGAGCTCGTACGTTCGAACTTATGTGGACCAATGAATGTCAAAGCTCGGGGAGGATATAAATATTTCATTAGTTTTATTGATGATTATTCAAGGTATGGTCATGTTTACCTAATTCAGAACAAGTTTGATTCTTTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAAAATGAATTAGGTAAAACAATAAAGGCACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTGCGATTCCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAGAACGGTGTATCAAAAAGAAGAAACTGA

Protein sequence

MTKRSFTGKDLRAKTSLELVRSNLCGPMNVKARGGYKYFISFIDDYSRYGHVYLIQNKFDSFEKFKEYKAEVENELGKTIKALRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSKRRN

Homology

[Close]

BLAST of Cmc07g0194031 vs. NCBI nr
Match: TYK14710.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.0 bits (611), Expect = 1.1e-59
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MTKRSFTGKDLRAKTSLELVRSNLCGPMNVKARGGYKYFISFIDDYSRYGHVYLIQNKFD 60
           M KRSF GKDLRAKTSLELVRSNLCGPMNVKARGGY+YFISFIDDYSRYGHVYLIQNK D
Sbjct: 1   MIKRSFPGKDLRAKTSLELVRSNLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSD 60

Query: 61  SFEKFKEYKAEVENELGKTIKALRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGV 120
           SFEKFKEYKAEVENELGKTIK LRSDRGGEYMDLRFQDYLIEHGIQSQL APSTPQQNGV
Sbjct: 61  SFEKFKEYKAEVENELGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLCAPSTPQQNGV 120

Query: 121 SKRRN 126
           SKRRN
Sbjct: 121 SKRRN 125

[Close]

BLAST of Cmc07g0194031 vs. NCBI nr
Match: KAA0067819.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 227.3 bits (578), Expect = 7.6e-56
Identity = 112/125 (89.60%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MTKRSFTGKDLRAKTSLELVRSNLCGPMNVKARGGYKYFISFIDDYSRYGHVYLIQNKFD 60
           MTKRSFTGK LRAKT LELV S+LC PMNVKARGGY+YFISFIDDYSRYGHVYLIQNK D
Sbjct: 306 MTKRSFTGKGLRAKTPLELVHSDLCEPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSD 365

Query: 61  SFEKFKEYKAEVENELGKTIKALRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGV 120
           SFEKFKEYKAEVENE GKT+K  RSD+GGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGV
Sbjct: 366 SFEKFKEYKAEVENESGKTLKTFRSDQGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGV 425

Query: 121 SKRRN 126
           S+RRN
Sbjct: 426 SERRN 430

[Close]

BLAST of Cmc07g0194031 vs. NCBI nr
Match: KAA0040307.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK23398.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 224.9 bits (572), Expect = 3.8e-55
Identity = 111/125 (88.80%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MTKRSFTGKDLRAKTSLELVRSNLCGPMNVKARGGYKYFISFIDDYSRYGHVYLIQNKFD 60
           MTKRSFTGK L+AKT LEL+ SNLC PMNVKARGGY+YFI+FIDDYSRYGHVYLIQNK D
Sbjct: 286 MTKRSFTGKGLQAKTPLELIHSNLCEPMNVKARGGYEYFINFIDDYSRYGHVYLIQNKSD 345

Query: 61  SFEKFKEYKAEVENELGKTIKALRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGV 120
           SFEKFKEYKAEVENE GK IK LRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQ NGV
Sbjct: 346 SFEKFKEYKAEVENESGKKIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQLNGV 405

Query: 121 SKRRN 126
           S+RRN
Sbjct: 406 SERRN 410

[Close]

BLAST of Cmc07g0194031 vs. NCBI nr
Match: KAA0054875.1 (gag/pol protein [Cucumis melo var. makuwa] >TYJ96592.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.8 bits (569), Expect = 8.4e-55
Identity = 111/125 (88.80%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MTKRSFTGKDLRAKTSLELVRSNLCGPMNVKARGGYKYFISFIDDYSRYGHVYLIQNKFD 60
           +TKRSFTGK L AKT LELV S+LCGPMNVKARGGY+YFISFIDDY+RYGHVYLIQNK D
Sbjct: 229 VTKRSFTGKGLGAKTLLELVHSDLCGPMNVKARGGYEYFISFIDDYTRYGHVYLIQNKSD 288

Query: 61  SFEKFKEYKAEVENELGKTIKALRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGV 120
           SFEKFKEYKAEVENE GKTIK  RSDRGGEYMDLRFQDYLIEH IQSQLSAPSTPQQNGV
Sbjct: 289 SFEKFKEYKAEVENESGKTIKTFRSDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNGV 348

Query: 121 SKRRN 126
           S+RRN
Sbjct: 349 SERRN 353

[Close]

BLAST of Cmc07g0194031 vs. NCBI nr
Match: TYK14486.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.4e-54
Identity = 108/125 (86.40%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MTKRSFTGKDLRAKTSLELVRSNLCGPMNVKARGGYKYFISFIDDYSRYGHVYLIQNKFD 60
           MTKRSFTGK LRAKT L+L+ S+LCGPMNVKARGGY+YFISFIDDYSRYGH+YLIQNK D
Sbjct: 1   MTKRSFTGKCLRAKTHLKLIHSDLCGPMNVKARGGYEYFISFIDDYSRYGHIYLIQNKSD 60

Query: 61  SFEKFKEYKAEVENELGKTIKALRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGV 120
           SFEKFKEYKA+VENE GKTIK LRSD+GG+YMDL+FQDYLIEHGIQSQLSAPS PQQNGV
Sbjct: 61  SFEKFKEYKADVENESGKTIKTLRSDQGGKYMDLQFQDYLIEHGIQSQLSAPSMPQQNGV 120

Query: 121 SKRRN 126
           S+RRN
Sbjct: 121 SERRN 125

[Close]

BLAST of Cmc07g0194031 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.4e-25
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 0


Query: 5   SFTGKDLRAKTSLELVRSNLCGPMNVKARGGYKYFISFIDDYSRYGHVYLIQNKFDSFEK 64
           SF     R    L+LV S++CGPM +++ GG KYF++FIDD SR   VY+++ K   F+ 
Sbjct: 469 SFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQV 528

Query: 65  FKEYKAEVENELGKTIKALRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSKRR 124
           F+++ A VE E G+ +K LRSD GGEY    F++Y   HGI+ + + P TPQ NGV++R 
Sbjct: 529 FQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERM 588

Query: 125 N 126
           N
Sbjct: 589 N 589

[Close]

BLAST of Cmc07g0194031 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.5e-10
Identity = 37/123 (30.08%), Postives = 65/123 (52.85%), Query Frame = 0


Query: 3   KRSFTGKDLRAKTSLELVRSNLCGPMNVKARGGYKYFISFIDDYSRYGHVYLIQNKFDSF 62
           K  F+   + +   LE + S++     + +   Y+Y++ F+D ++RY  +Y ++ K    
Sbjct: 510 KVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVK 569

Query: 63  EKFKEYKAEVENELGKTIKALRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSK 122
           E F  +K  +EN     I    SD GGE++ L   +Y  +HGI    S P TP+ NG+S+
Sbjct: 570 ETFITFKNLLENRFQTRIGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSE 629

Query: 123 RRN 126
           R++
Sbjct: 630 RKH 629

[Close]

BLAST of Cmc07g0194031 vs. ExPASy TrEMBL
Match: A0A5D3CTE2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00400 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 5.5e-60
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MTKRSFTGKDLRAKTSLELVRSNLCGPMNVKARGGYKYFISFIDDYSRYGHVYLIQNKFD 60
           M KRSF GKDLRAKTSLELVRSNLCGPMNVKARGGY+YFISFIDDYSRYGHVYLIQNK D
Sbjct: 1   MIKRSFPGKDLRAKTSLELVRSNLCGPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSD 60

Query: 61  SFEKFKEYKAEVENELGKTIKALRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGV 120
           SFEKFKEYKAEVENELGKTIK LRSDRGGEYMDLRFQDYLIEHGIQSQL APSTPQQNGV
Sbjct: 61  SFEKFKEYKAEVENELGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLCAPSTPQQNGV 120

Query: 121 SKRRN 126
           SKRRN
Sbjct: 121 SKRRN 125

[Close]

BLAST of Cmc07g0194031 vs. ExPASy TrEMBL
Match: A0A5A7VRN6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00230 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.7e-56
Identity = 112/125 (89.60%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MTKRSFTGKDLRAKTSLELVRSNLCGPMNVKARGGYKYFISFIDDYSRYGHVYLIQNKFD 60
           MTKRSFTGK LRAKT LELV S+LC PMNVKARGGY+YFISFIDDYSRYGHVYLIQNK D
Sbjct: 306 MTKRSFTGKGLRAKTPLELVHSDLCEPMNVKARGGYEYFISFIDDYSRYGHVYLIQNKSD 365

Query: 61  SFEKFKEYKAEVENELGKTIKALRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGV 120
           SFEKFKEYKAEVENE GKT+K  RSD+GGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGV
Sbjct: 366 SFEKFKEYKAEVENESGKTLKTFRSDQGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGV 425

Query: 121 SKRRN 126
           S+RRN
Sbjct: 426 SERRN 430

[Close]

BLAST of Cmc07g0194031 vs. ExPASy TrEMBL
Match: A0A5A7TFI0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004640 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.8e-55
Identity = 111/125 (88.80%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MTKRSFTGKDLRAKTSLELVRSNLCGPMNVKARGGYKYFISFIDDYSRYGHVYLIQNKFD 60
           MTKRSFTGK L+AKT LEL+ SNLC PMNVKARGGY+YFI+FIDDYSRYGHVYLIQNK D
Sbjct: 286 MTKRSFTGKGLQAKTPLELIHSNLCEPMNVKARGGYEYFINFIDDYSRYGHVYLIQNKSD 345

Query: 61  SFEKFKEYKAEVENELGKTIKALRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGV 120
           SFEKFKEYKAEVENE GK IK LRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQ NGV
Sbjct: 346 SFEKFKEYKAEVENESGKKIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQLNGV 405

Query: 121 SKRRN 126
           S+RRN
Sbjct: 406 SERRN 410

[Close]

BLAST of Cmc07g0194031 vs. ExPASy TrEMBL
Match: A0A5A7UMM9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1278G00100 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.0e-55
Identity = 111/125 (88.80%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MTKRSFTGKDLRAKTSLELVRSNLCGPMNVKARGGYKYFISFIDDYSRYGHVYLIQNKFD 60
           +TKRSFTGK L AKT LELV S+LCGPMNVKARGGY+YFISFIDDY+RYGHVYLIQNK D
Sbjct: 229 VTKRSFTGKGLGAKTLLELVHSDLCGPMNVKARGGYEYFISFIDDYTRYGHVYLIQNKSD 288

Query: 61  SFEKFKEYKAEVENELGKTIKALRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGV 120
           SFEKFKEYKAEVENE GKTIK  RSDRGGEYMDLRFQDYLIEH IQSQLSAPSTPQQNGV
Sbjct: 289 SFEKFKEYKAEVENESGKTIKTFRSDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNGV 348

Query: 121 SKRRN 126
           S+RRN
Sbjct: 349 SERRN 353

[Close]

BLAST of Cmc07g0194031 vs. ExPASy TrEMBL
Match: A0A5A7UC33 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1184G00050 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.9e-55
Identity = 108/125 (86.40%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MTKRSFTGKDLRAKTSLELVRSNLCGPMNVKARGGYKYFISFIDDYSRYGHVYLIQNKFD 60
           MTKRSFTGK LRAKT L+L+ S+LCGPMNVKARGGY+YFISFIDDYSRYGH+YLIQNK D
Sbjct: 1   MTKRSFTGKCLRAKTHLKLIHSDLCGPMNVKARGGYEYFISFIDDYSRYGHIYLIQNKSD 60

Query: 61  SFEKFKEYKAEVENELGKTIKALRSDRGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGV 120
           SFEKFKEYKA+VENE GKTIK LRSD+GG+YMDL+FQDYLIEHGIQSQLSAPS PQQNGV
Sbjct: 61  SFEKFKEYKADVENESGKTIKTLRSDQGGKYMDLQFQDYLIEHGIQSQLSAPSMPQQNGV 120

Query: 121 SKRRN 126
           S+RRN
Sbjct: 121 SERRN 125

The following BLAST results are available for this feature:

BLAST of Cmc07g0194031 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14710.1	1.1e-59	95.20	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0067819.1	7.6e-56	89.60	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0040307.1	3.8e-55	88.80	gag/pol protein [Cucumis melo var. makuwa] >TYK23398.1 gag/pol protein [Cucumis ...	[more]
KAA0054875.1	8.4e-55	88.80	gag/pol protein [Cucumis melo var. makuwa] >TYJ96592.1 gag/pol protein [Cucumis ...	[more]
TYK14486.1	1.4e-54	86.40	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0194031 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	9.4e-25	45.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	8.5e-10	30.08	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc07g0194031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CTE2	5.5e-60	95.20	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G0040...	[more]
A0A5A7VRN6	3.7e-56	89.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G002...	[more]
A0A5A7TFI0	1.8e-55	88.80	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G0046...	[more]
A0A5A7UMM9	4.0e-55	88.80	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1278G001...	[more]
A0A5A7UC33	6.9e-55	86.40	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1184G000...	[more]

BLAST of Cmc07g0194031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 27..115 e-value: 8.7E-10 score: 38.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 12..125 score: 16.239166
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 8..125 e-value: 2.1E-21 score: 78.2
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 22..115
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 22..115
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 10..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0194031.1	Cmc07g0194031.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding