Cmc07g0194001 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0194001
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 16297425 .. 16298072 (+)
RNA-Seq Expression	Cmc07g0194001
Synteny	Cmc07g0194001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATCCCACTCAATTCATCAGAGAACTTAGGGGAGACAGTCCCTAAGGAGATCATGCACGTGCTAGAGAAGTACCGTGATGTGATGCCCGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTGGTGCCAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCGCCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATGAGTTACTGAATGCAGGGTTCATTAGGCCTGCAAAAGCTCCGTATGGAGCCCCAGTTCTTTTCCAGAAGAAGAAAGATGGGAGTTTACGATTGTGCATTGATTATCGTGCCCTGAATAAGCTCACGGTTCGCAATAAGTATCCACTTCCCATAATTACTGACTTGTTCGATCGCTTACATAGGGCGAAGTATTTTTCAAAGTTAGACTTGCGGTCGGGATACTACCAAGTGAGAATTGCAGAGGGAGATGAGCCGAAGACAACCTGTGTCACCCGATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACCAATGCCCCTGTCATCTTCTGTACGTTGATGAACCAGGTCTTCCACGAATATCTCGATAAATTCCTTGATAAATTCGTAGTAGTCTACCTGATGATATAG

mRNA sequence

ATGGCCATCCCACTCAATTCATCAGAGAACTTAGGGGAGACAGTCCCTAAGGAGATCATGCACGTGCTAGAGAAGTACCGTGATGTGATGCCCGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTGGTGCCAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCGCCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATGAGTTACTGAATGCAGGGTTCATTAGGCCTGCAAAAGCTCCGTATGGAGCCCCAGTTCTTTTCCAGAAGAAGAAAGATGGGAGTTTACGATTGTGCATTGATTATCGTGCCCTGAATAAGCTCACGGTTCGCAATAAGTATCCACTTCCCATAATTACTGACTTGTTCGATCGCTTACATAGGGCGAAGTATTTTTCAAAGTTAGACTTGCGGTCGGGATACTACCAAGTGAGAATTGCAGAGGGAGATGAGCCGAAGACAACCTGTGTCACCCGATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACCAATGCCCCTGTCATCTTCTGTACGTTGATGAACCAGGTCTTCCACGAATATCTCGATAAATTCCTTGATAAATTCGTAGTAGTCTACCTGATGATATAG

Coding sequence (CDS)

ATGGCCATCCCACTCAATTCATCAGAGAACTTAGGGGAGACAGTCCCTAAGGAGATCATGCACGTGCTAGAGAAGTACCGTGATGTGATGCCCGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTGGTGCCAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCGCCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATGAGTTACTGAATGCAGGGTTCATTAGGCCTGCAAAAGCTCCGTATGGAGCCCCAGTTCTTTTCCAGAAGAAGAAAGATGGGAGTTTACGATTGTGCATTGATTATCGTGCCCTGAATAAGCTCACGGTTCGCAATAAGTATCCACTTCCCATAATTACTGACTTGTTCGATCGCTTACATAGGGCGAAGTATTTTTCAAAGTTAGACTTGCGGTCGGGATACTACCAAGTGAGAATTGCAGAGGGAGATGAGCCGAAGACAACCTGTGTCACCCGATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACCAATGCCCCTGTCATCTTCTGTACGTTGATGAACCAGGTCTTCCACGAATATCTCGATAAATTCCTTGATAAATTCGTAGTAGTCTACCTGATGATATAG

Protein sequence

MAIPLNSSENLGETVPKEIMHVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHRAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPVIFCTLMNQVFHEYLDKFLDKFVVVYLMI

Homology

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BLAST of Cmc07g0194001 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 409.1 bits (1050), Expect = 2.4e-110
Identity = 203/213 (95.31%), Postives = 204/213 (95.77%), Query Frame = 0


Query: 1   MAIPLNSSENLGETVPKEIMHVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 60
           MAIPLNSSEN GETVPKEI+ VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN
Sbjct: 581 MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 640

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV 120
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV
Sbjct: 641 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV 700

Query: 121 RNKYPLPIITDLFDRLHRAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 180
           RNKYPLPIITDLFDRLH AKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF
Sbjct: 701 RNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 760

Query: 181 GLTNAPVIFCTLMNQVFHEYLDKFLDKFVVVYL 214
           GLTNAP  FCTLMNQVFHEY    LDKFVVVYL
Sbjct: 761 GLTNAPATFCTLMNQVFHEY----LDKFVVVYL 789

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BLAST of Cmc07g0194001 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 407.1 bits (1045), Expect = 9.2e-110
Identity = 202/213 (94.84%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1   MAIPLNSSENLGETVPKEIMHVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 60
           MAIPL SSEN GETVPKEIM VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN
Sbjct: 607 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 666

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV 120
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTV
Sbjct: 667 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 726

Query: 121 RNKYPLPIITDLFDRLHRAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 180
           RNKYPLPIITDLFDRLH AKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF
Sbjct: 727 RNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 786

Query: 181 GLTNAPVIFCTLMNQVFHEYLDKFLDKFVVVYL 214
           GLTNAP  FCTLMNQVFHEY    LDKFVVVYL
Sbjct: 787 GLTNAPATFCTLMNQVFHEY----LDKFVVVYL 815

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BLAST of Cmc07g0194001 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 407.1 bits (1045), Expect = 9.2e-110
Identity = 202/213 (94.84%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1   MAIPLNSSENLGETVPKEIMHVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 60
           MAIPL SSEN GETVPKEIM VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV 120
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTV
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 730

Query: 121 RNKYPLPIITDLFDRLHRAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 180
           RNKYPLPIITDLFDRLH AKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF
Sbjct: 731 RNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 790

Query: 181 GLTNAPVIFCTLMNQVFHEYLDKFLDKFVVVYL 214
           GLTNAP  FCTLMNQVFHEY    LDKFVVVYL
Sbjct: 791 GLTNAPATFCTLMNQVFHEY----LDKFVVVYL 819

[Close]

BLAST of Cmc07g0194001 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 407.1 bits (1045), Expect = 9.2e-110
Identity = 202/213 (94.84%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1   MAIPLNSSENLGETVPKEIMHVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 60
           MAIPL SSEN GETVPKEIM VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV 120
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTV
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 730

Query: 121 RNKYPLPIITDLFDRLHRAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 180
           RNKYPLPIITDLFDRLH AKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF
Sbjct: 731 RNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 790

Query: 181 GLTNAPVIFCTLMNQVFHEYLDKFLDKFVVVYL 214
           GLTNAP  FCTLMNQVFHEY    LDKFVVVYL
Sbjct: 791 GLTNAPATFCTLMNQVFHEY----LDKFVVVYL 819

[Close]

BLAST of Cmc07g0194001 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 407.1 bits (1045), Expect = 9.2e-110
Identity = 202/213 (94.84%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1   MAIPLNSSENLGETVPKEIMHVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 60
           MAIPL SSEN GETVPKEIM VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV 120
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTV
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 730

Query: 121 RNKYPLPIITDLFDRLHRAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 180
           RNKYPLPIITDLFDRLH AKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF
Sbjct: 731 RNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 790

Query: 181 GLTNAPVIFCTLMNQVFHEYLDKFLDKFVVVYL 214
           GLTNAP  FCTLMNQVFHEY    LDKFVVVYL
Sbjct: 791 GLTNAPATFCTLMNQVFHEY----LDKFVVVYL 819

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BLAST of Cmc07g0194001 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.1e-40
Identity = 79/109 (72.48%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 105 SLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHRAKYFSKLDLRSGYYQVRIAEGDEPKT 164
           SLR+CIDYRAL K+T++NKYP+P + DLFDRL +A +F+KLDLRSGY+QVRIA+GDEPKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 165 TCVTRYGAFEFLVMPFGLTNAPVIFCTLMNQVFHEYLDKFLDKFVVVYL 214
           TCVTRYG+FEF VMPFGLTNA   FC LMN V +EY    LD FVVVYL
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEY----LDHFVVVYL 109

[Close]

BLAST of Cmc07g0194001 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 146.7 bits (369), Expect = 2.9e-34
Identity = 78/196 (39.80%), Postives = 114/196 (58.16%), Query Frame = 0


Query: 24  EKYRDVMPDSLP------KSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLD 83
           +KYR+++ + LP       ++P    + H+IE+ PGA+ P    Y +      E+ K + 
Sbjct: 562 QKYREIIRNDLPPRPADINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ 621

Query: 84  ELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLH 143
           +LL+  FI P+K+P  +PV+   KKDG+ RLC+DYR LNK T+ + +PLP I +L  R+ 
Sbjct: 622 KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 681

Query: 144 RAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPVIFCTLMNQVF 203
            A+ F+ LDL SGY+Q+ +   D  KT  VT  G +E+ VMPFGL NAP  F   M   F
Sbjct: 682 NAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTF 741

Query: 204 HEYLDKFLDKFVVVYL 214
            +       +FV VYL
Sbjct: 742 RDL------RFVNVYL 747

[Close]

BLAST of Cmc07g0194001 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 2.9e-34
Identity = 78/196 (39.80%), Postives = 114/196 (58.16%), Query Frame = 0


Query: 24  EKYRDVMPDSLP------KSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLD 83
           +KYR+++ + LP       ++P    + H+IE+ PGA+ P    Y +      E+ K + 
Sbjct: 588 QKYREIIRNDLPPRPADINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ 647

Query: 84  ELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLH 143
           +LL+  FI P+K+P  +PV+   KKDG+ RLC+DYR LNK T+ + +PLP I +L  R+ 
Sbjct: 648 KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 707

Query: 144 RAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPVIFCTLMNQVF 203
            A+ F+ LDL SGY+Q+ +   D  KT  VT  G +E+ VMPFGL NAP  F   M   F
Sbjct: 708 NAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTF 767

Query: 204 HEYLDKFLDKFVVVYL 214
            +       +FV VYL
Sbjct: 768 RDL------RFVNVYL 773

[Close]

BLAST of Cmc07g0194001 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.1e-28
Identity = 63/184 (34.24%), Postives = 111/184 (60.33%), Query Frame = 0


Query: 18  EIMHVLEKYRDVMPDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYRMAPPELAELRKQ 77
           E+  + ++++D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 78  LDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDR 137
           +++ L +G IR +KA    PV+F  KK+G+LR+ +DY+ LNK    N YPLP+I  L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 138 LHRAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPVIFCTLMNQ 197
           +  +  F+KLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ AP  F   +N 
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 552

Query: 198 VFHE 200
           +  E
Sbjct: 553 ILGE 555

[Close]

BLAST of Cmc07g0194001 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.1e-28
Identity = 63/184 (34.24%), Postives = 111/184 (60.33%), Query Frame = 0


Query: 18  EIMHVLEKYRDVMPDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYRMAPPELAELRKQ 77
           E+  + ++++D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 78  LDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDR 137
           +++ L +G IR +KA    PV+F  KK+G+LR+ +DY+ LNK    N YPLP+I  L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 138 LHRAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPVIFCTLMNQ 197
           +  +  F+KLDL+S Y+ +R+ +GDE K       G FE+LVMP+G++ AP  F   +N 
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 552

Query: 198 VFHE 200
           +  E
Sbjct: 553 ILGE 555

[Close]

BLAST of Cmc07g0194001 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 1.2e-110
Identity = 203/213 (95.31%), Postives = 204/213 (95.77%), Query Frame = 0


Query: 1   MAIPLNSSENLGETVPKEIMHVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 60
           MAIPLNSSEN GETVPKEI+ VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN
Sbjct: 581 MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 640

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV 120
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV
Sbjct: 641 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV 700

Query: 121 RNKYPLPIITDLFDRLHRAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 180
           RNKYPLPIITDLFDRLH AKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF
Sbjct: 701 RNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 760

Query: 181 GLTNAPVIFCTLMNQVFHEYLDKFLDKFVVVYL 214
           GLTNAP  FCTLMNQVFHEY    LDKFVVVYL
Sbjct: 761 GLTNAPATFCTLMNQVFHEY----LDKFVVVYL 789

[Close]

BLAST of Cmc07g0194001 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.4e-110
Identity = 202/213 (94.84%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1   MAIPLNSSENLGETVPKEIMHVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 60
           MAIPL SSEN GETVPKEIM VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV 120
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTV
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 730

Query: 121 RNKYPLPIITDLFDRLHRAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 180
           RNKYPLPIITDLFDRLH AKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF
Sbjct: 731 RNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 790

Query: 181 GLTNAPVIFCTLMNQVFHEYLDKFLDKFVVVYL 214
           GLTNAP  FCTLMNQVFHEY    LDKFVVVYL
Sbjct: 791 GLTNAPATFCTLMNQVFHEY----LDKFVVVYL 819

[Close]

BLAST of Cmc07g0194001 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.4e-110
Identity = 202/213 (94.84%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1   MAIPLNSSENLGETVPKEIMHVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 60
           MAIPL SSEN GETVPKEIM VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV 120
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTV
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 730

Query: 121 RNKYPLPIITDLFDRLHRAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 180
           RNKYPLPIITDLFDRLH AKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF
Sbjct: 731 RNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 790

Query: 181 GLTNAPVIFCTLMNQVFHEYLDKFLDKFVVVYL 214
           GLTNAP  FCTLMNQVFHEY    LDKFVVVYL
Sbjct: 791 GLTNAPATFCTLMNQVFHEY----LDKFVVVYL 819

[Close]

BLAST of Cmc07g0194001 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.4e-110
Identity = 202/213 (94.84%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1   MAIPLNSSENLGETVPKEIMHVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 60
           MAIPL SSEN GETVPKEIM VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV 120
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTV
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 730

Query: 121 RNKYPLPIITDLFDRLHRAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 180
           RNKYPLPIITDLFDRLH AKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF
Sbjct: 731 RNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 790

Query: 181 GLTNAPVIFCTLMNQVFHEYLDKFLDKFVVVYL 214
           GLTNAP  FCTLMNQVFHEY    LDKFVVVYL
Sbjct: 791 GLTNAPATFCTLMNQVFHEY----LDKFVVVYL 819

[Close]

BLAST of Cmc07g0194001 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.4e-110
Identity = 202/213 (94.84%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1   MAIPLNSSENLGETVPKEIMHVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 60
           MAIPL SSEN GETVPKEIM VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV 120
           AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTV
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 730

Query: 121 RNKYPLPIITDLFDRLHRAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 180
           RNKYPLPIITDLFDRLH AKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF
Sbjct: 731 RNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPF 790

Query: 181 GLTNAPVIFCTLMNQVFHEYLDKFLDKFVVVYL 214
           GLTNAP  FCTLMNQVFHEY    LDKFVVVYL
Sbjct: 791 GLTNAPATFCTLMNQVFHEY----LDKFVVVYL 819

The following BLAST results are available for this feature:

BLAST of Cmc07g0194001 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07954.1	2.4e-110	95.31	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	9.2e-110	94.84	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	9.2e-110	94.84	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	9.2e-110	94.84	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032849.1	9.2e-110	94.84	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0194001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	6.1e-40	72.48	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	2.9e-34	39.80	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.9e-34	39.80	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	4.1e-28	34.24	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.1e-28	34.24	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc07g0194001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9P8	1.2e-110	95.31	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5D3C4R1	4.4e-110	94.84	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	4.4e-110	94.84	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	4.4e-110	94.84	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5A7T0E2	4.4e-110	94.84	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]

BLAST of Cmc07g0194001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 124..213 e-value: 2.1E-63 score: 215.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 44..184 e-value: 2.1E-63 score: 215.5
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 13..209
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 13..209
None	No IPR available	CDD	cd01647	RT_LTR	coord: 83..213 e-value: 5.10137E-60 score: 184.336
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 100..212 e-value: 2.0E-15 score: 56.9
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 80..215 score: 8.691126
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 22..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0194001.1	Cmc07g0194001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding