Cmc07g0193901 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0193901
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 16167566 .. 16168903 (+)
RNA-Seq Expression	Cmc07g0193901
Synteny	Cmc07g0193901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTCAGCTAAAGCAGTGGGAGATTTGAAGTTGTTTTTTAATGATAGATATATCGTACTCAAGAATGTTTTGTATGCACCTCAAATGAAGAGAAATTTGATATCTATCTCTTGTATGTTAGAACATATGTACAGAATATCTTTTGAAATTAATGAAGCGTTCATTTTTCGAAAAGGTATTCATATTTGTTCTGCTATACTTGAAAACAACTTATATAAGTTAAGACCAACACGAGCAAATTTTGTCTTAAATACTGAAATATTTAGAACAACTGAAACTCATAATAAAAGACAAAAAGTTTCTTCTAATGCCTTCTTATGGCACTTAAGACTTGGTCACATAAATCTCAATAGGATTGGGAGATTGGTTAAGAATGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACCTCCTTGTGATTCCTATCTTGAAGGAAAAATGACCAAAAGATCTTTTACTAGAAAAGGTCTTAGAACCAAAATACCTTTGGAGCTCGTACATTCGAACCTTTGTGGACCAATGAATGTCAAGGCTCGGGAAGGATACAGATATTTCAGTAGTTTTATTGATGATTATTTGAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTTAAAGAATATAAGGCTAAAGTTGAAAATGAATCAGGTAAAACAATAAAGACATTTCAATCAGATCGAGGTAGAGAGTATATGGACTTGCGATGCCAAGACTATTTGATAAAACATGGAGTCCTATCACAACTCTCTGCACCTAGTACGCCTCAACAGAATGGTGTATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTCGCTCTATGATGAGTTTTGCTCGGTTGCCGGATTCTTTTTGGGGATATGCTTTAGAAACAAGTATCTATATTTTAAACAACGTTCCCTCTAAAAGTGTTTCTAAAATACCTTATGAGCTATGCAAAGGGCGTAAAGGTAGTTTAGGTCCCTTTAGGATTTGGGGATGTCCAGCACATGTGTTGGTGCAAAATCCTAAAAAGTTGGAACGACGTTCAAAATTATGCCTATTTGTAGGTTATCCAAAAGAATCAAAAGGTGGTTTATTTTATGAACCTCAAGAAAATAAAGTATTTGTATCGACAAATGCTACATTCTTAGAGGAAGACCACATAAGAAATCATCAAACTCGGAGTAAACTAGTATTAGAAGAAATTTCCAAGAATACTACAGATAGACCTAGTTCATCTACTAAAGTAGTGGATAAAACTAGGAATATTGGTCAAACACATCCTTCTCAAGAGTTGGGAGAGCCTCATCGTAATGGGAGGGTTGTACGATAG

mRNA sequence

ATGGTCTCAGCTAAAGCAGTGGGAGATTTGAAGTTGTTTTTTAATGATAGATATATCGTACTCAAGAATGTTTTGTATGCACCTCAAATGAAGAGAAATTTGATATCTATCTCTTGTATGTTAGAACATATGTACAGAATATCTTTTGAAATTAATGAAGCGTTCATTTTTCGAAAAGGTATTCATATTTGTTCTGCTATACTTGAAAACAACTTATATAAGTTAAGACCAACACGAGCAAATTTTGTCTTAAATACTGAAATATTTAGAACAACTGAAACTCATAATAAAAGACAAAAAGTTTCTTCTAATGCCTTCTTATGGCACTTAAGACTTGGTCACATAAATCTCAATAGGATTGGGAGATTGGTTAAGAATGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACCTCCTTGTGATTCCTATCTTGAAGGAAAAATGACCAAAAGATCTTTTACTAGAAAAGGTCTTAGAACCAAAATACCTTTGGAGCTCGTACATTCGAACCTTTGTGGACCAATGAATGTCAAGGCTCGGGAAGGATACAGATATTTCAGTAGTTTTATTGATGATTATTTGAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTTAAAGAATATAAGGCTAAAGTTGAAAATGAATCAGGTAAAACAATAAAGACATTTCAATCAGATCGAGGTAGAGAGTATATGGACTTGCGATGCCAAGACTATTTGATAAAACATGGAGTCCTATCACAACTCTCTGCACCTAGTACGCCTCAACAGAATGGTGTATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTCGCTCTATGATGAGTTTTGCTCGGTTGCCGGATTCTTTTTGGGGATATGCTTTAGAAACAAGTATCTATATTTTAAACAACGTTCCCTCTAAAAGTGTTTCTAAAATACCTTATGAGCTATGCAAAGGGCGTAAAGGTAGTTTAGGTCCCTTTAGGATTTGGGGATGTCCAGCACATGTGTTGGTGCAAAATCCTAAAAAGTTGGAACGACGTTCAAAATTATGCCTATTTGTAGGTTATCCAAAAGAATCAAAAGGTGGTTTATTTTATGAACCTCAAGAAAATAAAGTATTTGTATCGACAAATGCTACATTCTTAGAGGAAGACCACATAAGAAATCATCAAACTCGGAGTAAACTAGTATTAGAAGAAATTTCCAAGAATACTACAGATAGACCTAGTTCATCTACTAAAGTAGTGGATAAAACTAGGAATATTGGTCAAACACATCCTTCTCAAGAGTTGGGAGAGCCTCATCGTAATGGGAGGGTTGTACGATAG

Coding sequence (CDS)

ATGGTCTCAGCTAAAGCAGTGGGAGATTTGAAGTTGTTTTTTAATGATAGATATATCGTACTCAAGAATGTTTTGTATGCACCTCAAATGAAGAGAAATTTGATATCTATCTCTTGTATGTTAGAACATATGTACAGAATATCTTTTGAAATTAATGAAGCGTTCATTTTTCGAAAAGGTATTCATATTTGTTCTGCTATACTTGAAAACAACTTATATAAGTTAAGACCAACACGAGCAAATTTTGTCTTAAATACTGAAATATTTAGAACAACTGAAACTCATAATAAAAGACAAAAAGTTTCTTCTAATGCCTTCTTATGGCACTTAAGACTTGGTCACATAAATCTCAATAGGATTGGGAGATTGGTTAAGAATGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACCTCCTTGTGATTCCTATCTTGAAGGAAAAATGACCAAAAGATCTTTTACTAGAAAAGGTCTTAGAACCAAAATACCTTTGGAGCTCGTACATTCGAACCTTTGTGGACCAATGAATGTCAAGGCTCGGGAAGGATACAGATATTTCAGTAGTTTTATTGATGATTATTTGAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTTAAAGAATATAAGGCTAAAGTTGAAAATGAATCAGGTAAAACAATAAAGACATTTCAATCAGATCGAGGTAGAGAGTATATGGACTTGCGATGCCAAGACTATTTGATAAAACATGGAGTCCTATCACAACTCTCTGCACCTAGTACGCCTCAACAGAATGGTGTATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTCGCTCTATGATGAGTTTTGCTCGGTTGCCGGATTCTTTTTGGGGATATGCTTTAGAAACAAGTATCTATATTTTAAACAACGTTCCCTCTAAAAGTGTTTCTAAAATACCTTATGAGCTATGCAAAGGGCGTAAAGGTAGTTTAGGTCCCTTTAGGATTTGGGGATGTCCAGCACATGTGTTGGTGCAAAATCCTAAAAAGTTGGAACGACGTTCAAAATTATGCCTATTTGTAGGTTATCCAAAAGAATCAAAAGGTGGTTTATTTTATGAACCTCAAGAAAATAAAGTATTTGTATCGACAAATGCTACATTCTTAGAGGAAGACCACATAAGAAATCATCAAACTCGGAGTAAACTAGTATTAGAAGAAATTTCCAAGAATACTACAGATAGACCTAGTTCATCTACTAAAGTAGTGGATAAAACTAGGAATATTGGTCAAACACATCCTTCTCAAGAGTTGGGAGAGCCTCATCGTAATGGGAGGGTTGTACGATAG

Protein sequence

MVSAKAVGDLKLFFNDRYIVLKNVLYAPQMKRNLISISCMLEHMYRISFEINEAFIFRKGIHICSAILENNLYKLRPTRANFVLNTEIFRTTETHNKRQKVSSNAFLWHLRLGHINLNRIGRLVKNGLLSQLEDNSLPPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNVKAREGYRYFSSFIDDYLRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREYMDLRCQDYLIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALETSIYILNNVPSKSVSKIPYELCKGRKGSLGPFRIWGCPAHVLVQNPKKLERRSKLCLFVGYPKESKGGLFYEPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTDRPSSSTKVVDKTRNIGQTHPSQELGEPHRNGRVVR

Homology

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BLAST of Cmc07g0193901 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 719.2 bits (1855), Expect = 2.3e-203
Identity = 355/444 (79.95%), Postives = 394/444 (88.74%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIVLKNVLYAPQMKRNLISISCMLEHMYRISFEINEAFIFRKG 60
           +VSA+AVGDL LFF DRY++LK+VLY P MKRNLISI+C+LEH+Y ISFE+NE FI  KG
Sbjct: 338 VVSAEAVGDLTLFFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKG 397

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTTETHNKRQKVSSNAFLWHLRLGHINLNRI 120
           I ICSAI ENNLYKLRPTRAN VLNTE+FRT ET NK+QKVSSNA+LWHLRLGHINLNRI
Sbjct: 398 IQICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRI 457

Query: 121 GRLVKNGLLSQLEDNSLPPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNVKAR 180
            RLVK+G+L+QLEDNSLPPC+S LEGKMTKRSFT KGLR K+PLELVHS+LCGPMNVKAR
Sbjct: 458 ERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKAR 517

Query: 181 EGYRYFSSFIDDYLRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREYMD 240
            GY YF SFIDD+ RYGHVYL+ +KS+SFEKFKEYKA+VENE GKTIKT +SDRG EYMD
Sbjct: 518 GGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMD 577

Query: 241 LRCQDYLIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALETS 300
            + QDYLI+ G+ SQLSAPSTPQQNGVSERRNRTLLDMVRSMMS+A+LPDSFWGYALET+
Sbjct: 578 SKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETA 637

Query: 301 IYILNNVPSKSVSKIPYELCKGRKGSLGPFRIWGCPAHVLVQNPKKLERRSKLCLFVGYP 360
           I+ILNNVPSKSV + PYEL KGRK SL  FRIWGCPAHVLVQNPKKLE RSKLCLFVGYP
Sbjct: 638 IHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLCLFVGYP 697

Query: 361 KESKGGLFYEPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTDRPSSSTKVVD 420
           KES+GGLFY PQENKVFVSTNATFLEEDH RNHQ RSK+VL+E+ KN TD+PSSSTKVVD
Sbjct: 698 KESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDKPSSSTKVVD 757

Query: 421 KTRNIGQTHPSQELGEPHRNGRVV 445
           K     Q+H SQEL  P R+GRVV
Sbjct: 758 KANISDQSHTSQELRVPRRSGRVV 781

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BLAST of Cmc07g0193901 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 631.3 bits (1627), Expect = 6.2e-177
Identity = 306/449 (68.15%), Postives = 375/449 (83.52%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIVLKNVLYAPQMKRNLISISCMLEHMYRISFEINEAFIFRKG 60
           ++SA+AVGD KLFF ++++ L+N+   P++KRNL+S+SC++EHMY I+F +NEAFI++ G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTTETHNKRQKVS--SNAFLWHLRLGHINLN 120
           +HICSA LENNLY LRP  A  VLN E+FRT  T NKRQ++S  +N +LWHLRLGHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKNGLLSQLEDNSLPPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNVK 180
           RIGRLVKNGLL++L+D SLPPC+S LEGKMTKR FT KG R K PLEL+HS+LCGPMNVK
Sbjct: 362 RIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 AREGYRYFSSFIDDYLRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREY 240
           AR G+ YF SFIDDY RYG++YL+++KS++ EKFKEYK +VEN   K IK  +SDRG EY
Sbjct: 422 ARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 481

Query: 241 MDLRCQDYLIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALE 300
           MDLR QDY+I+HG+ SQLSAP TPQQNGVSERRNRTLLDMVRSMMS+A+LP SFWGYA+E
Sbjct: 482 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 TSIYILNNVPSKSVSKIPYELCKGRKGSLGPFRIWGCPAHVLVQNPKKLERRSKLCLFVG 360
           T+++ILNNVPSKSVS+ P+EL +GRK SL  FRIWGCPAHVLV NPKKLE RS+LC FVG
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVG 601

Query: 361 YPKESKGGLFYEPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTT---DRPSSS 420
           YPKE++GGLF++PQEN+VFVSTNATFLEEDH+RNH+ RSKLVL E +  +T   D    S
Sbjct: 602 YPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPS 661

Query: 421 TKVVDKTRNIGQTHPSQELGEPHRNGRVV 445
           ++ VD+T   GQ+HPSQ L  P R+GRVV
Sbjct: 662 SR-VDETTTSGQSHPSQSLRMPRRSGRVV 689

[Close]

BLAST of Cmc07g0193901 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 624.8 bits (1610), Expect = 5.8e-175
Identity = 303/449 (67.48%), Postives = 374/449 (83.30%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIVLKNVLYAPQMKRNLISISCMLEHMYRISFEINEAFIFRKG 60
           ++SA+AVGD KLFF ++++ L+N+   P++KRNL+S+SC++EHMY I+F +NEAFI++ G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTTETHNKRQKVS--SNAFLWHLRLGHINLN 120
           +HICSA LENNLY LRP  A  VLN E+FRT  T NKRQ++S  +N +LWHLRLGHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKNGLLSQLEDNSLPPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNVK 180
           RIGRLVK+GLL++L+D SLPPC+S LEGKMTKR FT KG R K PLEL+HS+LCGPMNVK
Sbjct: 362 RIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 AREGYRYFSSFIDDYLRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREY 240
           AR  + YF SFIDDY RYG++YL+++KS++ EKFKEYK +VEN   K IK F+SDRG EY
Sbjct: 422 ARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKIFRSDRGGEY 481

Query: 241 MDLRCQDYLIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALE 300
           MDL  QDY+I+HG+ SQLSAP TPQQNGVSERRNRTLLDMVRSMMS+A+LP SFWGYA+E
Sbjct: 482 MDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 TSIYILNNVPSKSVSKIPYELCKGRKGSLGPFRIWGCPAHVLVQNPKKLERRSKLCLFVG 360
           T+++ILNNVPSKSVS+ P+EL +GRK SL  FRIWGCPAHVLV NPKKLE RS+LC FVG
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVG 601

Query: 361 YPKESKGGLFYEPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTT---DRPSSS 420
           YPKE++GGLF++P+EN+VFVSTNATFLEEDH+RNH+ RSKLVL E +  +T   D    S
Sbjct: 602 YPKETRGGLFFDPKENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPS 661

Query: 421 TKVVDKTRNIGQTHPSQELGEPHRNGRVV 445
           ++ VD+T   GQ+HPSQ L  P R+GRVV
Sbjct: 662 SR-VDETTTSGQSHPSQSLRMPRRSGRVV 689

[Close]

BLAST of Cmc07g0193901 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 603.2 bits (1554), Expect = 1.8e-168
Identity = 293/447 (65.55%), Postives = 362/447 (80.98%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIVLKNVLYAPQMKRNLISISCMLEHMYRISFEINEAFIFRKG 60
           ++SA+AVGD KLFF ++++ L+N+   P++KRNL+S+SC++EHMY ISF +NEAFI + G
Sbjct: 214 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSMNEAFISKNG 273

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTTETHNKRQKVSS--NAFLWHLRLGHINLN 120
           +HICS  LE+NLY L+P     VLN E+FRT  T NKRQ++SS  N +LWHLRLGHINL+
Sbjct: 274 VHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWHLRLGHINLD 333

Query: 121 RIGRLVKNGLLSQLEDNSLPPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNVK 180
           RIGRLVKNGLL++LED+SLPPC+S LEGKMTKR FT KG R K PLEL+HS+LCGPMNVK
Sbjct: 334 RIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 393

Query: 181 AREGYRYFSSFIDDYLRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREY 240
           A  G+ YF SFIDDY  YG++YLI++KS++ EKFKEYK +VEN   K IK  +SDRG EY
Sbjct: 394 AIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 453

Query: 241 MDLRCQDYLIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALE 300
           MDLR QDY+I+HG+ SQLSAP TPQQNGVSERRNRTLLDMV SMMS+ +LP SFWGYA+E
Sbjct: 454 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYVQLPSSFWGYAVE 513

Query: 301 TSIYILNNVPSKSVSKIPYELCKGRKGSLGPFRIWGCPAHVLVQNPKKLERRSKLCLFVG 360
           T+++ILNNVPSK+V + P+EL +GRK SL  FRIW CP HVLV NPKKLE RS+LC FVG
Sbjct: 514 TAVHILNNVPSKNVFETPFELWRGRKPSLSHFRIWVCPVHVLVTNPKKLEPRSRLCQFVG 573

Query: 361 YPKESKGGLFYEPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTT---DRPSSS 420
           YPKE++GGLF++PQEN+VFVSTNATF EEDH+R+H+ R KLVL E +  +T   D    S
Sbjct: 574 YPKETRGGLFFDPQENRVFVSTNATFFEEDHMRDHKPRRKLVLSEATDESTRVVDEVGPS 633

Query: 421 TKVVDKTRNIGQTHPSQELGEPHRNGR 443
           ++ VD+T   GQ+HPSQ L  P R+GR
Sbjct: 634 SR-VDETTTSGQSHPSQSLRMPRRSGR 659

[Close]

BLAST of Cmc07g0193901 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 593.6 bits (1529), Expect = 1.4e-165
Identity = 298/452 (65.93%), Postives = 360/452 (79.65%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIVLKNVLYAPQMKRNLISISCMLEHMYRISFEINEAFIFRKG 60
           +VSA AVG L+L     +++L+NV   P +KRNLIS+ C+LE  Y ++F +N+ FI++ G
Sbjct: 344 VVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNG 403

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTTETHNKRQKVS--SNAFLWHLRLGHINLN 120
           + ICSA LENNLY LR   +  +LNTE+F+T  T NKR K+S   NA LWHLRLGHINLN
Sbjct: 404 VEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLN 463

Query: 121 RIGRLVKNGLLSQLEDNSLPPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNVK 180
           RI RLVKNGLLS+LE+NSLP C+S LEGKMTKR FT KG R K PLELVHS+LCGPMNVK
Sbjct: 464 RIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVK 523

Query: 181 AREGYRYFSSFIDDYLRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREY 240
           AR G+ YF +F DDY RYG+VYL+Q+KS++ EKFKEYKA+VEN   KTIKTF+SDRG EY
Sbjct: 524 ARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEY 583

Query: 241 MDLRCQDYLIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALE 300
           MDL+ Q+YL++ G++SQLSAP TPQQNGVSERRNRTLLDMVRSMMS+A LP+SFWGYA++
Sbjct: 584 MDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQ 643

Query: 301 TSIYILNNVPSKSVSKIPYELCKGRKGSLGPFRIWGCPAHVLVQNPKKLERRSKLCLFVG 360
           T++YILN VPSKSVS+ P +L  GRKGSL  FRIWGCPAHVL  NPKKLE RSKLCLFVG
Sbjct: 644 TAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVG 703

Query: 361 YPKESKGGLFYEPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTT-------DR 420
           YPK ++GG FY+P++NKVFVSTNATFLEEDHIR H+ RSK+VL E+SK TT       + 
Sbjct: 704 YPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEE 763

Query: 421 PSSSTKVVDKTRNIGQTHPSQELGEPHRNGRV 444
           PS+ T+VV    +  +TH  Q L EP R+GRV
Sbjct: 764 PSALTRVV-HVGSSTRTHQPQSLREPRRSGRV 794

[Close]

BLAST of Cmc07g0193901 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.0e-57
Identity = 138/419 (32.94%), Postives = 227/419 (54.18%), Query Frame = 0


Query: 19  IVLKNVLYAPQMKRNLISISCMLEHMYRISFEINEAFIFRKG-IHICSAILENNLYKLRP 78
           +VLK+V + P ++ NLIS   +    Y  S+  N+ +   KG + I   +    LY+   
Sbjct: 348 LVLKDVRHVPDLRMNLISGIALDRDGYE-SYFANQKWRLTKGSLVIAKGVARGTLYR--- 407

Query: 79  TRANFVLNTEIFRTTETHNKRQKVSSNAFLWHLRLGHINLNRIGRLVKNGLLSQLEDNSL 138
                  N EI +  E +  + ++S +  LWH R+GH++   +  L K  L+S  +  ++
Sbjct: 408 ------TNAEICQ-GELNAAQDEISVD--LWHKRMGHMSEKGLQILAKKSLISYAKGTTV 467

Query: 139 PPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNVKAREGYRYFSSFIDDYLRYG 198
            PCD  L GK  + SF     R    L+LV+S++CGPM +++  G +YF +FIDD  R  
Sbjct: 468 KPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKL 527

Query: 199 HVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREYMDLRCQDYLIKHGVLSQLS 258
            VY+++ K   F+ F+++ A VE E+G+ +K  +SD G EY     ++Y   HG+  + +
Sbjct: 528 WVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKT 587

Query: 259 APSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALETSIYILNNVPSKSVS-KIP 318
            P TPQ NGV+ER NRT+++ VRSM+  A+LP SFWG A++T+ Y++N  PS  ++ +IP
Sbjct: 588 VPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIP 647

Query: 319 YELCKGRKGSLGPFRIWGCP--AHVLVQNPKKLERRSKLCLFVGYPKESKGGLFYEPQEN 378
             +   ++ S    +++GC   AHV  +   KL+ +S  C+F+GY  E  G   ++P + 
Sbjct: 648 ERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKK 707

Query: 379 KVFVSTNATFLEEDHIRNHQTRSKLVLEEISKN------TTDRPSSSTKVVDKTRNIGQ 428
           KV  S +  F  E  +R     S+ V   I  N      T++ P+S+    D+    G+
Sbjct: 708 KVIRSRDVVF-RESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGE 752

[Close]

BLAST of Cmc07g0193901 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 186.8 bits (473), Expect = 5.3e-46
Identity = 125/419 (29.83%), Postives = 209/419 (49.88%), Query Frame = 0


Query: 15  NDRYIVLKNVLYAPQMKRNLISISCMLEHMYRISFEINEAFIFRKGIHICSAILENNLYK 74
           ND  I L++VL+  +   NL+S+  + E    I F+ +   I + G+ +           
Sbjct: 339 NDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMV----------- 398

Query: 75  LRPTRANFVLNTEIFRTTETHNKRQKVSSNAFLWHLRLGHIN------LNRIGRLVKNGL 134
               + + +LN       + ++   K  +N  LWH R GHI+      + R        L
Sbjct: 399 ---VKNSGMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSL 458

Query: 135 LSQLEDNSLPPCDSYLEGKMTKRSFTRKGLRTKI--PLELVHSNLCGPMNVKAREGYRYF 194
           L+ LE  S   C+  L GK  +  F +   +T I  PL +VHS++CGP+     +   YF
Sbjct: 459 LNNLE-LSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYF 518

Query: 195 SSFIDDYLRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREYMDLRCQDY 254
             F+D +  Y   YLI+ KSD F  F+++ AK E      +     D GREY+    + +
Sbjct: 519 VIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQF 578

Query: 255 LIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALETSIYILNN 314
            +K G+   L+ P TPQ NGVSER  RT+ +  R+M+S A+L  SFWG A+ T+ Y++N 
Sbjct: 579 CVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINR 638

Query: 315 VPSKSV---SKIPYELCKGRKGSLGPFRIWGCPAHVLVQNPK-KLERRSKLCLFVGYPKE 374
           +PS+++   SK PYE+   +K  L   R++G   +V ++N + K + +S   +FVGY  E
Sbjct: 639 IPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGY--E 698

Query: 375 SKGGLFYEPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTDR--PSSSTKVV 420
             G   ++    K  V+ +    E + + +   + + V  + SK + ++  P+ S K++
Sbjct: 699 PNGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKII 740

[Close]

BLAST of Cmc07g0193901 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.2e-37
Identity = 102/389 (26.22%), Postives = 189/389 (48.59%), Query Frame = 0


Query: 8   GDLKLFFNDRYIVLKNVLYAPQMKRNLISISCMLE------HMYRISFEINEAFIFRKGI 67
           G   L    R + L N+LY P + +NLIS+  +          +  SF++ +      G+
Sbjct: 374 GSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKD---LNTGV 433

Query: 68  HICSAILENNLYKLRPTRANFVLNTEIFRTTETHNKRQKVSSNAFLWHLRLGHINLNRIG 127
            +     ++ LY+     +  V       +  TH+           WH RLGH   + + 
Sbjct: 434 PLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSS----------WHARLGHPAPSILN 493

Query: 128 RLVKNGLLSQLE-DNSLPPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNVKAR 187
            ++ N  LS L   +    C   L  K  K  F++  + +  PLE ++S++     + + 
Sbjct: 494 SVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSH 553

Query: 188 EGYRYFSSFIDDYLRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREYMD 247
           + YRY+  F+D + RY  +Y ++ KS   E F  +K  +EN     I TF SD G E++ 
Sbjct: 554 DNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVA 613

Query: 248 LRCQDYLIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALETS 307
           L   +Y  +HG+    S P TP+ NG+SER++R +++   +++S A +P ++W YA   +
Sbjct: 614 L--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVA 673

Query: 308 IYILNNVPSKSVS-KIPYELCKGRKGSLGPFRIWGCPAHVLVQ--NPKKLERRSKLCLFV 367
           +Y++N +P+  +  + P++   G   +    R++GC  +  ++  N  KL+ +S+ C+F+
Sbjct: 674 VYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFL 733

Query: 368 GYPKESKGGLFYEPQENKVFVSTNATFLE 387
           GY       L    Q +++++S +  F E
Sbjct: 734 GYSLTQSAYLCLHLQTSRLYISRHVRFDE 746

[Close]

BLAST of Cmc07g0193901 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.6e-37
Identity = 105/389 (26.99%), Postives = 188/389 (48.33%), Query Frame = 0


Query: 8   GDLKLFFNDRYIVLKNVLYAPQMKRNLISISCMLE------HMYRISFEINEAFIFRKGI 67
           G   L  + R + L  VLY P + +NLIS+  +          +  SF++ +      G+
Sbjct: 353 GSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKD---LNTGV 412

Query: 68  HICSAILENNLYKLRPTRANFVLNTEIFRTTETHNKRQKVSSNAFLWHLRLGHINLNRIG 127
            +     ++ LY+     +  V       +  TH+           WH RLGH +L  + 
Sbjct: 413 PLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSS----------WHSRLGHPSLAILN 472

Query: 128 RLVKNGLLSQLE-DNSLPPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNVKAR 187
            ++ N  L  L   + L  C      K  K  F+   + +  PLE ++S++     + + 
Sbjct: 473 SVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSI 532

Query: 188 EGYRYFSSFIDDYLRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREYMD 247
           + YRY+  F+D + RY  +Y ++ KS   + F  +K+ VEN     I T  SD G E++ 
Sbjct: 533 DNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVV 592

Query: 248 LRCQDYLIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALETS 307
           LR  DYL +HG+    S P TP+ NG+SER++R +++M  +++S A +P ++W YA   +
Sbjct: 593 LR--DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVA 652

Query: 308 IYILNNVPSKSVS-KIPYELCKGRKGSLGPFRIWGCPAHVLVQ--NPKKLERRSKLCLFV 367
           +Y++N +P+  +  + P++   G+  +    +++GC  +  ++  N  KLE +SK C F+
Sbjct: 653 VYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFM 712

Query: 368 GYPKESKGGLFYEPQENKVFVSTNATFLE 387
           GY       L       +++ S +  F E
Sbjct: 713 GYSLTQSAYLCLHIPTGRLYTSRHVQFDE 725

[Close]

BLAST of Cmc07g0193901 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.6e-21
Identity = 96/410 (23.41%), Postives = 174/410 (42.44%), Query Frame = 0


Query: 2   VSAKAVGDLKLFFNDRYIVLKNVLYAPQMKRNLISISCMLEHMYRISFEINEAFIFRKGI 61
           +   A+G+L   F +        L+ P +  +L+S+S +        F  N       G 
Sbjct: 490 IPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRN-TLERSDGT 549

Query: 62  HICSAILENNLYKLRPTRANFVLNTEIFRTTETH-NKRQKVSSNAF-LWHLRLGHINLNR 121
            +   +   + Y L      +++ + I + T  + NK + V+   + L H  LGH N   
Sbjct: 550 VLAPIVKHGDFYWL---SKKYLIPSHISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRS 609

Query: 122 IGRLVKNGLLSQLEDNSLP-------PCDSYLEGKMTKRSFTRKGLRTKI-----PLELV 181
           I + +K   ++ L+++ +         C   L GK TK     KG R K      P + +
Sbjct: 610 IQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHV-KGSRLKYQESYEPFQYL 669

Query: 182 HSNLCGPMNVKAREGYRYFSSFIDDYLRYGHVYLIQNKSDS--FEKFKEYKAKVENESGK 241
           H+++ GP++   +    YF SF D+  R+  VY + ++ +      F    A ++N+   
Sbjct: 670 HTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNA 729

Query: 242 TIKTFQSDRGREYMDLRCQDYLIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSF 301
            +   Q DRG EY +     +    G+ +  +  +  + +GV+ER NRTLL+  R+++  
Sbjct: 730 RVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHC 789

Query: 302 ARLPDSFWGYALETSIYILNNVPSKSVSKIPYELCKGRKGSLGPFRIWGCPAHVLVQNP- 361
           + LP+  W  A+E S  I N++ S    K   +        +     +G P  V   NP 
Sbjct: 790 SGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDITTILPFGQPVIVNNHNPD 849

Query: 362 KKLERRSKLCLFVGYPKESKGGLFYEPQENKVFVSTNATFLEEDHIRNHQ 395
            K+  R      +   + S G + Y P   K   +TN   L+++  +  Q
Sbjct: 850 SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDNQSKLDQ 894

[Close]

BLAST of Cmc07g0193901 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 719.2 bits (1855), Expect = 1.1e-203
Identity = 355/444 (79.95%), Postives = 394/444 (88.74%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIVLKNVLYAPQMKRNLISISCMLEHMYRISFEINEAFIFRKG 60
           +VSA+AVGDL LFF DRY++LK+VLY P MKRNLISI+C+LEH+Y ISFE+NE FI  KG
Sbjct: 338 VVSAEAVGDLTLFFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKG 397

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTTETHNKRQKVSSNAFLWHLRLGHINLNRI 120
           I ICSAI ENNLYKLRPTRAN VLNTE+FRT ET NK+QKVSSNA+LWHLRLGHINLNRI
Sbjct: 398 IQICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRI 457

Query: 121 GRLVKNGLLSQLEDNSLPPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNVKAR 180
            RLVK+G+L+QLEDNSLPPC+S LEGKMTKRSFT KGLR K+PLELVHS+LCGPMNVKAR
Sbjct: 458 ERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKAR 517

Query: 181 EGYRYFSSFIDDYLRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREYMD 240
            GY YF SFIDD+ RYGHVYL+ +KS+SFEKFKEYKA+VENE GKTIKT +SDRG EYMD
Sbjct: 518 GGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMD 577

Query: 241 LRCQDYLIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALETS 300
            + QDYLI+ G+ SQLSAPSTPQQNGVSERRNRTLLDMVRSMMS+A+LPDSFWGYALET+
Sbjct: 578 SKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETA 637

Query: 301 IYILNNVPSKSVSKIPYELCKGRKGSLGPFRIWGCPAHVLVQNPKKLERRSKLCLFVGYP 360
           I+ILNNVPSKSV + PYEL KGRK SL  FRIWGCPAHVLVQNPKKLE RSKLCLFVGYP
Sbjct: 638 IHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLCLFVGYP 697

Query: 361 KESKGGLFYEPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTDRPSSSTKVVD 420
           KES+GGLFY PQENKVFVSTNATFLEEDH RNHQ RSK+VL+E+ KN TD+PSSSTKVVD
Sbjct: 698 KESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDKPSSSTKVVD 757

Query: 421 KTRNIGQTHPSQELGEPHRNGRVV 445
           K     Q+H SQEL  P R+GRVV
Sbjct: 758 KANISDQSHTSQELRVPRRSGRVV 781

[Close]

BLAST of Cmc07g0193901 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 631.3 bits (1627), Expect = 3.0e-177
Identity = 306/449 (68.15%), Postives = 375/449 (83.52%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIVLKNVLYAPQMKRNLISISCMLEHMYRISFEINEAFIFRKG 60
           ++SA+AVGD KLFF ++++ L+N+   P++KRNL+S+SC++EHMY I+F +NEAFI++ G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTTETHNKRQKVS--SNAFLWHLRLGHINLN 120
           +HICSA LENNLY LRP  A  VLN E+FRT  T NKRQ++S  +N +LWHLRLGHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKNGLLSQLEDNSLPPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNVK 180
           RIGRLVKNGLL++L+D SLPPC+S LEGKMTKR FT KG R K PLEL+HS+LCGPMNVK
Sbjct: 362 RIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 AREGYRYFSSFIDDYLRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREY 240
           AR G+ YF SFIDDY RYG++YL+++KS++ EKFKEYK +VEN   K IK  +SDRG EY
Sbjct: 422 ARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 481

Query: 241 MDLRCQDYLIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALE 300
           MDLR QDY+I+HG+ SQLSAP TPQQNGVSERRNRTLLDMVRSMMS+A+LP SFWGYA+E
Sbjct: 482 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 TSIYILNNVPSKSVSKIPYELCKGRKGSLGPFRIWGCPAHVLVQNPKKLERRSKLCLFVG 360
           T+++ILNNVPSKSVS+ P+EL +GRK SL  FRIWGCPAHVLV NPKKLE RS+LC FVG
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVG 601

Query: 361 YPKESKGGLFYEPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTT---DRPSSS 420
           YPKE++GGLF++PQEN+VFVSTNATFLEEDH+RNH+ RSKLVL E +  +T   D    S
Sbjct: 602 YPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPS 661

Query: 421 TKVVDKTRNIGQTHPSQELGEPHRNGRVV 445
           ++ VD+T   GQ+HPSQ L  P R+GRVV
Sbjct: 662 SR-VDETTTSGQSHPSQSLRMPRRSGRVV 689

[Close]

BLAST of Cmc07g0193901 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 2.8e-175
Identity = 303/449 (67.48%), Postives = 374/449 (83.30%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIVLKNVLYAPQMKRNLISISCMLEHMYRISFEINEAFIFRKG 60
           ++SA+AVGD KLFF ++++ L+N+   P++KRNL+S+SC++EHMY I+F +NEAFI++ G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTTETHNKRQKVS--SNAFLWHLRLGHINLN 120
           +HICSA LENNLY LRP  A  VLN E+FRT  T NKRQ++S  +N +LWHLRLGHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKNGLLSQLEDNSLPPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNVK 180
           RIGRLVK+GLL++L+D SLPPC+S LEGKMTKR FT KG R K PLEL+HS+LCGPMNVK
Sbjct: 362 RIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 AREGYRYFSSFIDDYLRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREY 240
           AR  + YF SFIDDY RYG++YL+++KS++ EKFKEYK +VEN   K IK F+SDRG EY
Sbjct: 422 ARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKIFRSDRGGEY 481

Query: 241 MDLRCQDYLIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALE 300
           MDL  QDY+I+HG+ SQLSAP TPQQNGVSERRNRTLLDMVRSMMS+A+LP SFWGYA+E
Sbjct: 482 MDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 TSIYILNNVPSKSVSKIPYELCKGRKGSLGPFRIWGCPAHVLVQNPKKLERRSKLCLFVG 360
           T+++ILNNVPSKSVS+ P+EL +GRK SL  FRIWGCPAHVLV NPKKLE RS+LC FVG
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVG 601

Query: 361 YPKESKGGLFYEPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTT---DRPSSS 420
           YPKE++GGLF++P+EN+VFVSTNATFLEEDH+RNH+ RSKLVL E +  +T   D    S
Sbjct: 602 YPKETRGGLFFDPKENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPS 661

Query: 421 TKVVDKTRNIGQTHPSQELGEPHRNGRVV 445
           ++ VD+T   GQ+HPSQ L  P R+GRVV
Sbjct: 662 SR-VDETTTSGQSHPSQSLRMPRRSGRVV 689

[Close]

BLAST of Cmc07g0193901 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 603.2 bits (1554), Expect = 8.7e-169
Identity = 293/447 (65.55%), Postives = 362/447 (80.98%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIVLKNVLYAPQMKRNLISISCMLEHMYRISFEINEAFIFRKG 60
           ++SA+AVGD KLFF ++++ L+N+   P++KRNL+S+SC++EHMY ISF +NEAFI + G
Sbjct: 214 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSMNEAFISKNG 273

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTTETHNKRQKVSS--NAFLWHLRLGHINLN 120
           +HICS  LE+NLY L+P     VLN E+FRT  T NKRQ++SS  N +LWHLRLGHINL+
Sbjct: 274 VHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWHLRLGHINLD 333

Query: 121 RIGRLVKNGLLSQLEDNSLPPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNVK 180
           RIGRLVKNGLL++LED+SLPPC+S LEGKMTKR FT KG R K PLEL+HS+LCGPMNVK
Sbjct: 334 RIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 393

Query: 181 AREGYRYFSSFIDDYLRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREY 240
           A  G+ YF SFIDDY  YG++YLI++KS++ EKFKEYK +VEN   K IK  +SDRG EY
Sbjct: 394 AIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 453

Query: 241 MDLRCQDYLIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALE 300
           MDLR QDY+I+HG+ SQLSAP TPQQNGVSERRNRTLLDMV SMMS+ +LP SFWGYA+E
Sbjct: 454 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYVQLPSSFWGYAVE 513

Query: 301 TSIYILNNVPSKSVSKIPYELCKGRKGSLGPFRIWGCPAHVLVQNPKKLERRSKLCLFVG 360
           T+++ILNNVPSK+V + P+EL +GRK SL  FRIW CP HVLV NPKKLE RS+LC FVG
Sbjct: 514 TAVHILNNVPSKNVFETPFELWRGRKPSLSHFRIWVCPVHVLVTNPKKLEPRSRLCQFVG 573

Query: 361 YPKESKGGLFYEPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTT---DRPSSS 420
           YPKE++GGLF++PQEN+VFVSTNATF EEDH+R+H+ R KLVL E +  +T   D    S
Sbjct: 574 YPKETRGGLFFDPQENRVFVSTNATFFEEDHMRDHKPRRKLVLSEATDESTRVVDEVGPS 633

Query: 421 TKVVDKTRNIGQTHPSQELGEPHRNGR 443
           ++ VD+T   GQ+HPSQ L  P R+GR
Sbjct: 634 SR-VDETTTSGQSHPSQSLRMPRRSGR 659

[Close]

BLAST of Cmc07g0193901 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 593.6 bits (1529), Expect = 6.9e-166
Identity = 298/452 (65.93%), Postives = 360/452 (79.65%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIVLKNVLYAPQMKRNLISISCMLEHMYRISFEINEAFIFRKG 60
           +VSA AVG L+L     +++L+NV   P +KRNLIS+ C+LE  Y ++F +N+ FI++ G
Sbjct: 345 VVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNG 404

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTTETHNKRQKVS--SNAFLWHLRLGHINLN 120
           + ICSA LENNLY LR   +  +LNTE+F+T  T NKR K+S   NA LWHLRLGHINLN
Sbjct: 405 VEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLN 464

Query: 121 RIGRLVKNGLLSQLEDNSLPPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNVK 180
           RI RLVKNGLLS+LE+NSLP C+S LEGKMTKR FT KG R K PLELVHS+LCGPMNVK
Sbjct: 465 RIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVK 524

Query: 181 AREGYRYFSSFIDDYLRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFQSDRGREY 240
           AR G+ YF +F DDY RYG+VYL+Q+KS++ EKFKEYKA+VEN   KTIKTF+SDRG EY
Sbjct: 525 ARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEY 584

Query: 241 MDLRCQDYLIKHGVLSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFARLPDSFWGYALE 300
           MDL+ Q+YL++ G++SQLSAP TPQQNGVSERRNRTLLDMVRSMMS+A LP+SFWGYA++
Sbjct: 585 MDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQ 644

Query: 301 TSIYILNNVPSKSVSKIPYELCKGRKGSLGPFRIWGCPAHVLVQNPKKLERRSKLCLFVG 360
           T++YILN VPSKSVS+ P +L  GRKGSL  FRIWGCPAHVL  NPKKLE RSKLCLFVG
Sbjct: 645 TAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVG 704

Query: 361 YPKESKGGLFYEPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTT-------DR 420
           YPK ++GG FY+P++NKVFVSTNATFLEEDHIR H+ RSK+VL E+SK TT       + 
Sbjct: 705 YPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTEPSTRVVEE 764

Query: 421 PSSSTKVVDKTRNIGQTHPSQELGEPHRNGRV 444
           PS+ T+VV    +  +TH  Q L EP R+GRV
Sbjct: 765 PSALTRVV-HVGSSTRTHQPQSLREPRRSGRV 795

[Close]

BLAST of Cmc07g0193901 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-06
Identity = 34/114 (29.82%), Postives = 54/114 (47.37%), Query Frame = 0


Query: 64  CSAILENNLYKLRPTRANFVLNTEIFRTTETHNKRQKVSSNAFLWHLRLGHINLNRIGRL 123
           C  IL+ N +      + ++L   +   T   N  +       LWH RL H++   +  L
Sbjct: 35  CRTILKGNRHD-----SLYILQGSV--ETGESNLAETAKDETRLWHSRLAHMSQRGMELL 94

Query: 124 VKNGLLSQLEDNSLPPCDSYLEGKMTKRSFTRKGLRTKIPLELVHSNLCGPMNV 178
           VK G L   + +SL  C+  + GK  + +F+     TK PL+ VHS+L G  +V
Sbjct: 95  VKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSV 141

[Close]

BLAST of Cmc07g0193901 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 7.9e-05
Identity = 25/82 (30.49%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 272 NRTLLDMVRSMMSFARLPDSFWGYALETSIYILNNVPSKSVS-KIPYELCKGRKGSLGPF 331
           NRT+++ VRSM+    LP +F   A  T+++I+N  PS +++  +P E+      +    
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 332 RIWGCPAHVLVQNPKKLERRSK 353
           R +GC A++     K   R  K
Sbjct: 62  RRFGCVAYIHCDEGKLKPRAKK 83

The following BLAST results are available for this feature:

BLAST of Cmc07g0193901 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	2.3e-203	79.95	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0025945.1	6.2e-177	68.15	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	5.8e-175	67.48	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060534.1	1.8e-168	65.55	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0048404.1	1.4e-165	65.93	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0193901 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.0e-57	32.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	5.3e-46	29.83	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.2e-37	26.22	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.6e-37	26.99	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q12491	2.6e-21	23.41	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc07g0193901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	1.1e-203	79.95	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	3.0e-177	68.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7T2V9	2.8e-175	67.48	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3BNE1	8.7e-169	65.55	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7SMH8	6.9e-166	65.93	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]

BLAST of Cmc07g0193901 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	1.1e-06	29.82	Gag-Pol-related retrotransposon family protein	[more]
ATMG00710.1	7.9e-05	30.49	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 97..148 e-value: 6.2E-11 score: 42.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 157..333 e-value: 8.3E-33 score: 115.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 406..434
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 403..445
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 16..397
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 159..324 score: 20.3311
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 159..318

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0193901.1	Cmc07g0193901.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding