Cmc07g0193831 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0193831
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr07: 15941693 .. 15942295 (+)
RNA-Seq Expression	Cmc07g0193831
Synteny	Cmc07g0193831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTCAAGAGATCCTTTCTGAACGGGTACTTGAATGAAGAAGTTTATGTTGTTCAACCTAAGGGATTTATTGATCCTGAATTTTCACAGCATGTATATAAGCTTAATAAAGCTCTATATGGATTGAAGCAAGCACTAAGAGCTTGGTACAAACGACTAACTGTTTATCTTGGCCATAAGGGATACTCAATGGGAGGTGCTGGCAAAACATTATTTGTAAACAGATCTGATAATGATCTAATTGTGGCACAAATTTATGTAGATAATATTATATTTGGAGGATTTCCTAAAAAACTTATTGAAAGTTTCATTGATATCATGCAATCAGAATTTGAGATGAGTATGGTTGGTGAATTATCATGTTTTTTGGGCCTTCAGATCAAGCAAAGATTAGAGGGCATCTTTATAACTCAAGAGAAATATACCAAGAACATAGTGAGAAAATTTGGTCTTGAAAAATCCCAACAAAAGAGGACTCTAGCTGCAACACATGTCAAAATTACCAAAGATACTAATGGTACAACTGTAGATCACAAGTTATACAAAAGCATGATCGAAAGTCTACTGTATTTAACAGTCAGCAGGCCTGATATGGCGTAA

mRNA sequence

ATGGATGTCAAGAGATCCTTTCTGAACGGGTACTTGAATGAAGAAGTTTATGTTGTTCAACCTAAGGGATTTATTGATCCTGAATTTTCACAGCATGTATATAAGCTTAATAAAGCTCTATATGGATTGAAGCAAGCACTAAGAGCTTGGTACAAACGACTAACTGTTTATCTTGGCCATAAGGGATACTCAATGGGAGGTGCTGGCAAAACATTATTTGTAAACAGATCTGATAATGATCTAATTGTGGCACAAATTTATGTAGATAATATTATATTTGGAGGATTTCCTAAAAAACTTATTGAAAGTTTCATTGATATCATGCAATCAGAATTTGAGATGAGTATGGTTGGTGAATTATCATGTTTTTTGGGCCTTCAGATCAAGCAAAGATTAGAGGGCATCTTTATAACTCAAGAGAAATATACCAAGAACATAGTGAGAAAATTTGGTCTTGAAAAATCCCAACAAAAGAGGACTCTAGCTGCAACACATGTCAAAATTACCAAAGATACTAATGGTACAACTGTAGATCACAAGTTATACAAAAGCATGATCGAAAGTCTACTGTATTTAACAGTCAGCAGGCCTGATATGGCGTAA

Coding sequence (CDS)

ATGGATGTCAAGAGATCCTTTCTGAACGGGTACTTGAATGAAGAAGTTTATGTTGTTCAACCTAAGGGATTTATTGATCCTGAATTTTCACAGCATGTATATAAGCTTAATAAAGCTCTATATGGATTGAAGCAAGCACTAAGAGCTTGGTACAAACGACTAACTGTTTATCTTGGCCATAAGGGATACTCAATGGGAGGTGCTGGCAAAACATTATTTGTAAACAGATCTGATAATGATCTAATTGTGGCACAAATTTATGTAGATAATATTATATTTGGAGGATTTCCTAAAAAACTTATTGAAAGTTTCATTGATATCATGCAATCAGAATTTGAGATGAGTATGGTTGGTGAATTATCATGTTTTTTGGGCCTTCAGATCAAGCAAAGATTAGAGGGCATCTTTATAACTCAAGAGAAATATACCAAGAACATAGTGAGAAAATTTGGTCTTGAAAAATCCCAACAAAAGAGGACTCTAGCTGCAACACATGTCAAAATTACCAAAGATACTAATGGTACAACTGTAGATCACAAGTTATACAAAAGCATGATCGAAAGTCTACTGTATTTAACAGTCAGCAGGCCTGATATGGCGTAA

Protein sequence

MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGHKGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGELSCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDHKLYKSMIESLLYLTVSRPDMA

Homology

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BLAST of Cmc07g0193831 vs. NCBI nr
Match: KAA0059680.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26118.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 2.2e-81
Identity = 153/200 (76.50%), Postives = 175/200 (87.50%), Query Frame = 0


Query: 1   MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
           MDVK +FLNGYLNEE+Y VQPKGF D EF QHVYKLNKALYG+KQA R WY+RLT+YLG 
Sbjct: 1   MDVKSAFLNGYLNEELYAVQPKGFTDSEFPQHVYKLNKALYGIKQAPRVWYERLTIYLGC 60

Query: 61  KGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGEL 120
           KGY  GGA KTLF+NR+DNDLIVAQIY D+IIF GFPK+LI++FIDIM+SEFEMSMVGEL
Sbjct: 61  KGYFKGGADKTLFINRTDNDLIVAQIYFDDIIFRGFPKELIDNFIDIMKSEFEMSMVGEL 120

Query: 121 SCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDHK 180
            CFL LQIKQR EGIF++QEKY K+ V+KFGLE+S+ KRT A THVKITK+TNGTTVDHK
Sbjct: 121 FCFLSLQIKQRSEGIFMSQEKYAKHTVKKFGLEQSRHKRTPATTHVKITKNTNGTTVDHK 180

Query: 181 LYKSMIESLLYLTVSRPDMA 201
            Y+SMI SLLYL  +RPD+A
Sbjct: 181 FYRSMIGSLLYLMGNRPDIA 200

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BLAST of Cmc07g0193831 vs. NCBI nr
Match: TYJ98295.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 307.0 bits (785), Expect = 1.2e-79
Identity = 149/200 (74.50%), Postives = 176/200 (88.00%), Query Frame = 0


Query: 1   MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
           MDVK +FLNGYLNEEVYV QPKGFID EF Q+VYK+NKALYGLKQA RAWY+RL +YL  
Sbjct: 533 MDVKSAFLNGYLNEEVYVAQPKGFIDSEFPQYVYKINKALYGLKQAPRAWYERLIIYLDE 592

Query: 61  KGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGEL 120
           +GYS G   KTLF+NR+  DLIVAQIYVD+IIFGGFPK L+ +FI+I++SEFE+S+VG+L
Sbjct: 593 RGYSKGETDKTLFINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIIKSEFEISLVGKL 652

Query: 121 SCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDHK 180
           S FLGLQIKQR +G+FI+QEKY KN+V+KFGL++SQ KRTLAATHVKITKDT GT +DHK
Sbjct: 653 SYFLGLQIKQRSKGMFISQEKYAKNLVKKFGLDQSQYKRTLAATHVKITKDTVGTAIDHK 712

Query: 181 LYKSMIESLLYLTVSRPDMA 201
           LY+SMI SLLYLT SRPD+A
Sbjct: 713 LYRSMIGSLLYLTASRPDIA 732

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BLAST of Cmc07g0193831 vs. NCBI nr
Match: KAA0054435.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK14601.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 305.4 bits (781), Expect = 3.5e-79
Identity = 149/200 (74.50%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
           M VK +FLNGYLNEEVYV QPKGF+DPEF Q+VYKLNKALY LKQA +AWY+RLT+YLG 
Sbjct: 758 MHVKSAFLNGYLNEEVYVTQPKGFVDPEFPQYVYKLNKALYRLKQAPQAWYERLTMYLGE 817

Query: 61  KGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGEL 120
           + YS G   KTLF+NR+  +LIVAQIYVD+IIFGGFPK L+++FI+IM+SEFEMS+VGEL
Sbjct: 818 RVYSRGETDKTLFINRTSTNLIVAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGEL 877

Query: 121 SCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDHK 180
           SCFLGLQIKQR EG+FI+QEKY KN+V+KFGL++SQ KRT A TH KITKD  GT VDHK
Sbjct: 878 SCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQHKRTPAVTHAKITKDMVGTEVDHK 937

Query: 181 LYKSMIESLLYLTVSRPDMA 201
           LY+SMI SLLYLT SRPD+A
Sbjct: 938 LYRSMIGSLLYLTTSRPDIA 957

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BLAST of Cmc07g0193831 vs. NCBI nr
Match: TYK29824.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 304.3 bits (778), Expect = 7.8e-79
Identity = 148/200 (74.00%), Postives = 172/200 (86.00%), Query Frame = 0


Query: 1   MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
           MDVK +FLNGYLNEEV+V QPKGF+D EF QHVYKLNKALYGLKQA RAWYKRLT+YLG 
Sbjct: 410 MDVKSAFLNGYLNEEVFVAQPKGFVDSEFPQHVYKLNKALYGLKQAPRAWYKRLTIYLGD 469

Query: 61  KGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGEL 120
           KGYS  G  KTLF+NR+ ++LI+AQIYVD+IIFGGFPK  I +FI+IM+SEFEMSMVGEL
Sbjct: 470 KGYSRSGTSKTLFINRTSSELIIAQIYVDDIIFGGFPKAFIGNFINIMKSEFEMSMVGEL 529

Query: 121 SCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDHK 180
           SCFLGLQIKQR   IFI+QEKY KN+V+KFGL++ Q KRT  ATHVK+TKD NGT VDHK
Sbjct: 530 SCFLGLQIKQR--SIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHK 589

Query: 181 LYKSMIESLLYLTVSRPDMA 201
           LY+S++ SLLYL  S+ D+A
Sbjct: 590 LYRSLVGSLLYLMASKLDIA 607

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BLAST of Cmc07g0193831 vs. NCBI nr
Match: KAA0035705.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK30841.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 2.3e-78
Identity = 151/199 (75.88%), Postives = 173/199 (86.93%), Query Frame = 0


Query: 1   MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
           MD+K +FLNGYLNEEVYV QPKGFID EF Q+VYKLNKALYGLKQA RAWY+ LT+YLG 
Sbjct: 171 MDIKSAFLNGYLNEEVYVAQPKGFIDSEFPQYVYKLNKALYGLKQAPRAWYECLTMYLGK 230

Query: 61  KGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGEL 120
           KGYS G   KTLF+N+++ DLIVAQIYVD+IIFGGFPK L+ +FIDI++SEFEMS+VGEL
Sbjct: 231 KGYSKGETDKTLFINKTNIDLIVAQIYVDDIIFGGFPKILVNNFIDIIKSEFEMSLVGEL 290

Query: 121 SCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDHK 180
           S FLGLQIKQR EGIFI+QEKY KNIV+KF L++SQ KRT AATH KITKD+ GT VDHK
Sbjct: 291 SYFLGLQIKQRSEGIFISQEKYAKNIVKKFCLDQSQDKRTPAATHAKITKDSIGTAVDHK 350

Query: 181 LYKSMIESLLYLTVSRPDM 200
           LY+SMI SLLYL  SRPD+
Sbjct: 351 LYRSMIGSLLYLIASRPDI 369

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BLAST of Cmc07g0193831 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-28
Identity = 67/200 (33.50%), Postives = 113/200 (56.50%), Query Frame = 0


Query: 1    MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
            +DV  +FL G L +EVY+ QP GF+D +   +V +L KA+YGLKQA RAWY  L  YL  
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   KGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGEL 120
             G+    +  +LFV +    +I   +YVD+I+  G    L++  +D +   F +    +L
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  SCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDHK 180
              FLG++ K+  +G+ ++Q +YT +++ +  +  ++   T  AT  K+T  +     D  
Sbjct: 1167 HYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPT 1226

Query: 181  LYKSMIESLLYLTVSRPDMA 201
             Y+ ++ SL YL  +RPD++
Sbjct: 1227 EYRGIVGSLQYLAFTRPDLS 1246

[Close]

BLAST of Cmc07g0193831 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.9e-26
Identity = 66/200 (33.00%), Postives = 110/200 (55.00%), Query Frame = 0


Query: 1    MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
            +DV  +FL G L ++VY+ QP GFID +   +V KL KALYGLKQA RAWY  L  YL  
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   KGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGEL 120
             G+    +  +LFV +    ++   +YVD+I+  G    L+ + +D +   F +    EL
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  SCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDHK 180
              FLG++ K+   G+ ++Q +Y  +++ +  +  ++   T  A   K++  +     D  
Sbjct: 1184 HYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPT 1243

Query: 181  LYKSMIESLLYLTVSRPDMA 201
             Y+ ++ SL YL  +RPD++
Sbjct: 1244 EYRGIVGSLQYLAFTRPDIS 1263

[Close]

BLAST of Cmc07g0193831 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.0e-25
Identity = 71/210 (33.81%), Postives = 119/210 (56.67%), Query Frame = 0


Query: 1    MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
            +DVK +FL+G L EE+Y+ QP+GF        V KLNK+LYGLKQA R WY +   ++  
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   KGYSMGGAGKTLFVNR-SDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGE 120
            + Y    +   ++  R S+N+ I+  +YVD+++  G  K LI      +   F+M  +G 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  LSCFLGLQI--KQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTV 180
                LG++I  ++    ++++QEKY + ++ +F ++ ++   T  A H+K++K    TTV
Sbjct: 1041 AQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTV 1100

Query: 181  DHK------LYKSMIESLLYLTV-SRPDMA 201
            + K       Y S + SL+Y  V +RPD+A
Sbjct: 1101 EEKGNMAKVPYSSAVGSLMYAMVCTRPDIA 1130

[Close]

BLAST of Cmc07g0193831 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 93.6 bits (231), Expect = 2.7e-18
Identity = 61/203 (30.05%), Postives = 109/203 (53.69%), Query Frame = 0


Query: 1    MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
            MDVK +FLNG L EE+Y+  P+G      S +V KLNKA+YGLKQA R W++     L  
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGISCN--SDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   KGYSMGGAGKTLFV--NRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVG 120
              +      + +++    + N+ I   +YVD+++        + +F   +  +F M+ + 
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  ELSCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVD 180
            E+  F+G++I+ + + I+++Q  Y K I+ KF +E      T   +  KI  +   +  D
Sbjct: 1121 EIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPS--KINYELLNSDED 1180

Query: 181  -HKLYKSMIESLLYLTV-SRPDM 200
             +   +S+I  L+Y+ + +RPD+
Sbjct: 1181 CNTPCRSLIGCLMYIMLCTRPDL 1199

[Close]

BLAST of Cmc07g0193831 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 5.9e-13
Identity = 51/202 (25.25%), Postives = 94/202 (46.53%), Query Frame = 0


Query: 1   MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
           MDV  +FLN  ++E +YV QP GF++     +V++L   +YGLKQA   W + +   L  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  KGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGEL 120
            G+        L+   + +  I   +YVD+++      K+ +     +   + M  +G++
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 SCFLGLQIKQRLEG-IFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDH 180
             FLGL I Q   G I ++ + Y      +  +   +  +T       + + T+    D 
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 181 KLYKSMIESLLY-LTVSRPDMA 201
             Y+S++  LL+     RPD++
Sbjct: 181 TPYQSIVGQLLFCANTGRPDIS 202

[Close]

BLAST of Cmc07g0193831 vs. ExPASy TrEMBL
Match: A0A5A7UX16 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00310 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.1e-81
Identity = 153/200 (76.50%), Postives = 175/200 (87.50%), Query Frame = 0


Query: 1   MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
           MDVK +FLNGYLNEE+Y VQPKGF D EF QHVYKLNKALYG+KQA R WY+RLT+YLG 
Sbjct: 1   MDVKSAFLNGYLNEELYAVQPKGFTDSEFPQHVYKLNKALYGIKQAPRVWYERLTIYLGC 60

Query: 61  KGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGEL 120
           KGY  GGA KTLF+NR+DNDLIVAQIY D+IIF GFPK+LI++FIDIM+SEFEMSMVGEL
Sbjct: 61  KGYFKGGADKTLFINRTDNDLIVAQIYFDDIIFRGFPKELIDNFIDIMKSEFEMSMVGEL 120

Query: 121 SCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDHK 180
            CFL LQIKQR EGIF++QEKY K+ V+KFGLE+S+ KRT A THVKITK+TNGTTVDHK
Sbjct: 121 FCFLSLQIKQRSEGIFMSQEKYAKHTVKKFGLEQSRHKRTPATTHVKITKNTNGTTVDHK 180

Query: 181 LYKSMIESLLYLTVSRPDMA 201
            Y+SMI SLLYL  +RPD+A
Sbjct: 181 FYRSMIGSLLYLMGNRPDIA 200

[Close]

BLAST of Cmc07g0193831 vs. ExPASy TrEMBL
Match: A0A5D3BIP9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00070 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.8e-80
Identity = 149/200 (74.50%), Postives = 176/200 (88.00%), Query Frame = 0


Query: 1   MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
           MDVK +FLNGYLNEEVYV QPKGFID EF Q+VYK+NKALYGLKQA RAWY+RL +YL  
Sbjct: 533 MDVKSAFLNGYLNEEVYVAQPKGFIDSEFPQYVYKINKALYGLKQAPRAWYERLIIYLDE 592

Query: 61  KGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGEL 120
           +GYS G   KTLF+NR+  DLIVAQIYVD+IIFGGFPK L+ +FI+I++SEFE+S+VG+L
Sbjct: 593 RGYSKGETDKTLFINRTSTDLIVAQIYVDDIIFGGFPKTLVNNFINIIKSEFEISLVGKL 652

Query: 121 SCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDHK 180
           S FLGLQIKQR +G+FI+QEKY KN+V+KFGL++SQ KRTLAATHVKITKDT GT +DHK
Sbjct: 653 SYFLGLQIKQRSKGMFISQEKYAKNLVKKFGLDQSQYKRTLAATHVKITKDTVGTAIDHK 712

Query: 181 LYKSMIESLLYLTVSRPDMA 201
           LY+SMI SLLYLT SRPD+A
Sbjct: 713 LYRSMIGSLLYLTASRPDIA 732

[Close]

BLAST of Cmc07g0193831 vs. ExPASy TrEMBL
Match: A0A5D3CS19 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G001080 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.7e-79
Identity = 149/200 (74.50%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
           M VK +FLNGYLNEEVYV QPKGF+DPEF Q+VYKLNKALY LKQA +AWY+RLT+YLG 
Sbjct: 758 MHVKSAFLNGYLNEEVYVTQPKGFVDPEFPQYVYKLNKALYRLKQAPQAWYERLTMYLGE 817

Query: 61  KGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGEL 120
           + YS G   KTLF+NR+  +LIVAQIYVD+IIFGGFPK L+++FI+IM+SEFEMS+VGEL
Sbjct: 818 RVYSRGETDKTLFINRTSTNLIVAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGEL 877

Query: 121 SCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDHK 180
           SCFLGLQIKQR EG+FI+QEKY KN+V+KFGL++SQ KRT A TH KITKD  GT VDHK
Sbjct: 878 SCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQHKRTPAVTHAKITKDMVGTEVDHK 937

Query: 181 LYKSMIESLLYLTVSRPDMA 201
           LY+SMI SLLYLT SRPD+A
Sbjct: 938 LYRSMIGSLLYLTTSRPDIA 957

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BLAST of Cmc07g0193831 vs. ExPASy TrEMBL
Match: A0A5D3E1T0 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00520 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.8e-79
Identity = 148/200 (74.00%), Postives = 172/200 (86.00%), Query Frame = 0


Query: 1   MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
           MDVK +FLNGYLNEEV+V QPKGF+D EF QHVYKLNKALYGLKQA RAWYKRLT+YLG 
Sbjct: 410 MDVKSAFLNGYLNEEVFVAQPKGFVDSEFPQHVYKLNKALYGLKQAPRAWYKRLTIYLGD 469

Query: 61  KGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGEL 120
           KGYS  G  KTLF+NR+ ++LI+AQIYVD+IIFGGFPK  I +FI+IM+SEFEMSMVGEL
Sbjct: 470 KGYSRSGTSKTLFINRTSSELIIAQIYVDDIIFGGFPKAFIGNFINIMKSEFEMSMVGEL 529

Query: 121 SCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDHK 180
           SCFLGLQIKQR   IFI+QEKY KN+V+KFGL++ Q KRT  ATHVK+TKD NGT VDHK
Sbjct: 530 SCFLGLQIKQR--SIFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDINGTVVDHK 589

Query: 181 LYKSMIESLLYLTVSRPDMA 201
           LY+S++ SLLYL  S+ D+A
Sbjct: 590 LYRSLVGSLLYLMASKLDIA 607

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BLAST of Cmc07g0193831 vs. ExPASy TrEMBL
Match: A0A5A7T2M1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00360 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.1e-78
Identity = 151/199 (75.88%), Postives = 173/199 (86.93%), Query Frame = 0


Query: 1   MDVKRSFLNGYLNEEVYVVQPKGFIDPEFSQHVYKLNKALYGLKQALRAWYKRLTVYLGH 60
           MD+K +FLNGYLNEEVYV QPKGFID EF Q+VYKLNKALYGLKQA RAWY+ LT+YLG 
Sbjct: 171 MDIKSAFLNGYLNEEVYVAQPKGFIDSEFPQYVYKLNKALYGLKQAPRAWYECLTMYLGK 230

Query: 61  KGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGEL 120
           KGYS G   KTLF+N+++ DLIVAQIYVD+IIFGGFPK L+ +FIDI++SEFEMS+VGEL
Sbjct: 231 KGYSKGETDKTLFINKTNIDLIVAQIYVDDIIFGGFPKILVNNFIDIIKSEFEMSLVGEL 290

Query: 121 SCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDHK 180
           S FLGLQIKQR EGIFI+QEKY KNIV+KF L++SQ KRT AATH KITKD+ GT VDHK
Sbjct: 291 SYFLGLQIKQRSEGIFISQEKYAKNIVKKFCLDQSQDKRTPAATHAKITKDSIGTAVDHK 350

Query: 181 LYKSMIESLLYLTVSRPDM 200
           LY+SMI SLLYL  SRPD+
Sbjct: 351 LYRSMIGSLLYLIASRPDI 369

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BLAST of Cmc07g0193831 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 98.6 bits (244), Expect = 6.0e-21
Identity = 62/204 (30.39%), Postives = 104/204 (50.98%), Query Frame = 0


Query: 1   MDVKRSFLNGYLNEEVYVVQPKGFI----DPEFSQHVYKLNKALYGLKQALRAWYKRLTV 60
           +D+  +FLNG L+EE+Y+  P G+     D      V  L K++YGLKQA R W+ + +V
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  YLGHKGYSMGGAGKTLFVNRSDNDLIVAQIYVDNIIFGGFPKKLIESFIDIMQSEFEMSM 120
            L   G+    +  T F+  +    +   +YVD+II        ++     ++S F++  
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 VGELSCFLGLQIKQRLEGIFITQEKYTKNIVRKFGLEKSQQKRTLAATHVKITKDTNGTT 180
           +G L  FLGL+I +   GI I Q KY  +++ + GL   +         V  +  + G  
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF 372

Query: 181 VDHKLYKSMIESLLYLTVSRPDMA 201
           VD K Y+ +I  L+YL ++R D++
Sbjct: 373 VDAKAYRRLIGRLMYLQITRLDIS 396

[Close]

BLAST of Cmc07g0193831 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-09
Identity = 35/115 (30.43%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 86  IYVDNIIFGGFPKKLIESFIDIMQSEFEMSMVGELSCFLGLQIKQRLEGIFITQEKYTKN 145
           +YVD+I+  G    L+   I  + S F M  +G +  FLG+QIK    G+F++Q KY + 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 146 IVRKFGLEKSQQKRTLAATHVKITKDTNGTTVDHKLYKSMIESLLYLTVSRPDMA 201
           I+   G+   +   T     +  +  T     D   ++S++ +L YLT++RPD++
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVST-AKYPDPSDFRSIVGALQYLTLTRPDIS 118

The following BLAST results are available for this feature:

BLAST of Cmc07g0193831 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059680.1	2.2e-81	76.50	putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26118.1 putative gag...	[more]
TYJ98295.1	1.2e-79	74.50	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0054435.1	3.5e-79	74.50	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK14601.1 gag-pol polyprotein [...	[more]
TYK29824.1	7.8e-79	74.00	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0035705.1	2.3e-78	75.88	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK30841.1 gag-pol polyprotein [...	[more]

BLAST of Cmc07g0193831 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	5.0e-28	33.50	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	7.9e-26	33.00	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	3.0e-25	33.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.7e-18	30.05	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	5.9e-13	25.25	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc07g0193831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UX16	1.1e-81	76.50	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3BIP9	5.8e-80	74.50	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G...	[more]
A0A5D3CS19	1.7e-79	74.50	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G...	[more]
A0A5D3E1T0	3.8e-79	74.00	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7T2M1	1.1e-78	75.88	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G...	[more]

BLAST of Cmc07g0193831 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.0e-21	30.39	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	5.3e-09	30.43	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..158 e-value: 4.9E-38 score: 131.1
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 1..158
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..158
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0193831.1	Cmc07g0193831.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding