Cmc07g0193761 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0193761
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 15786187 .. 15786813 (+)
RNA-Seq Expression	Cmc07g0193761
Synteny	Cmc07g0193761

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAATGGTTGGAGATTGTGCATAGATTACCGAAAACTCAATGAGGTAACAAAAAAGGATCATTTCCCCTTACCTTTTCTTGATCAAATGATAGAACATTTAGCGGGTAGATCATATTTTTGTTTCTTAGATGGATTTTTCGATTTTTACCAAATTCCTATAGCATGTGAAGACCAAAAGAAAACAATTTTTAGTTGTAATTATGGAACTTATGCATTTTGGCGTATGCCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATATTTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTTCATAGTTTATGGTGATAGTTCTGATGCATATTTAGCCAATCTAGAATTAATTCTAAATAGATGCATAGAAACTAACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGATGTCTCATGGCATAGTTTTAGGACACTTAGTGTCTTCAAAAGGAATAGAGGTAGATAAAGCAAAAATTGACGTTATACAAAAATTGCCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTGGTAGTGCCAGCTTTTATAGACGGTTTATAAAAGATTTTTCTAAAATTGCTTTGCTCTAA

mRNA sequence

ATGCAAAATGGTTGGAGATTGTGCATAGATTACCGAAAACTCAATGAGGTAACAAAAAAGGATCATTTCCCCTTACCTTTTCTTGATCAAATGATAGAACATTTAGCGGGTAGATCATATTTTTGTTTCTTAGATGGATTTTTCGATTTTTACCAAATTCCTATAGCATGTGAAGACCAAAAGAAAACAATTTTTAGTTGTAATTATGGAACTTATGCATTTTGGCGTATGCCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATATTTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTTCATAGTTTATGGTGATAGTTCTGATGCATATTTAGCCAATCTAGAATTAATTCTAAATAGATGCATAGAAACTAACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGATGTCTCATGGCATAGTTTTAGGACACTTAGTGTCTTCAAAAGGAATAGAGGTAGATAAAGCAAAAATTGACGTTATACAAAAATTGCCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTGGTAGTGCCAGCTTTTATAGACGGTTTATAAAAGATTTTTCTAAAATTGCTTTGCTCTAA

Coding sequence (CDS)

ATGCAAAATGGTTGGAGATTGTGCATAGATTACCGAAAACTCAATGAGGTAACAAAAAAGGATCATTTCCCCTTACCTTTTCTTGATCAAATGATAGAACATTTAGCGGGTAGATCATATTTTTGTTTCTTAGATGGATTTTTCGATTTTTACCAAATTCCTATAGCATGTGAAGACCAAAAGAAAACAATTTTTAGTTGTAATTATGGAACTTATGCATTTTGGCGTATGCCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATATTTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTTCATAGTTTATGGTGATAGTTCTGATGCATATTTAGCCAATCTAGAATTAATTCTAAATAGATGCATAGAAACTAACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGATGTCTCATGGCATAGTTTTAGGACACTTAGTGTCTTCAAAAGGAATAGAGGTAGATAAAGCAAAAATTGACGTTATACAAAAATTGCCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTGGTAGTGCCAGCTTTTATAGACGGTTTATAAAAGATTTTTCTAAAATTGCTTTGCTCTAA

Protein sequence

MQNGWRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQKKTIFSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDAYLANLELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPTCLKDVRSFLGSASFYRRFIKDFSKIALL

Homology

[Close]

BLAST of Cmc07g0193761 vs. NCBI nr
Match: RZB46718.1 (Transposon Ty3-G Gag-Pol polyprotein [Glycine soja])

HSP 1 Score: 341.3 bits (874), Expect = 6.0e-90
Identity = 152/207 (73.43%), Postives = 183/207 (88.41%), Query Frame = 0


Query: 1   MQNGWRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQ 60
           +QN WR+CIDYR+LN+VTKKDHFPLPF+DQM+EHLAG+S++CFLDGF  + QI IA EDQ
Sbjct: 583 VQNSWRVCIDYRRLNQVTKKDHFPLPFIDQMLEHLAGKSHYCFLDGFSGYMQITIAPEDQ 642

Query: 61  KKTIFSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDA 120
           +KT F+C +GT+A+ RMPFGLCNAPGTFQRCM+SIFSDF+E CIEVFMDDF VYG S D 
Sbjct: 643 EKTTFTCPFGTFAYRRMPFGLCNAPGTFQRCMISIFSDFLENCIEVFMDDFTVYGSSFDG 702

Query: 121 YLANLELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPT 180
            L +LE +LNRCIETNLVLN+EKCHFM+  GIVLGH++S+KGIEVD AKI VI +LPYP+
Sbjct: 703 CLNSLEKVLNRCIETNLVLNFEKCHFMVEKGIVLGHIISNKGIEVDPAKISVISQLPYPS 762

Query: 181 CLKDVRSFLGSASFYRRFIKDFSKIAL 208
           C+++VRSFLG A FYRRFI+DFSK+AL
Sbjct: 763 CVREVRSFLGHAGFYRRFIRDFSKVAL 789

[Close]

BLAST of Cmc07g0193761 vs. NCBI nr
Match: XP_031392309.1 (uncharacterized protein LOC116204368 [Punica granatum])

HSP 1 Score: 340.9 bits (873), Expect = 7.8e-90
Identity = 152/206 (73.79%), Postives = 182/206 (88.35%), Query Frame = 0


Query: 1    MQNGWRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQ 60
            +QNGWR+CIDYRKLN  T+KDHFPLPF+DQM+E LAG+SYFCFLDG+  +YQI +A EDQ
Sbjct: 999  VQNGWRVCIDYRKLNAATRKDHFPLPFIDQMLERLAGKSYFCFLDGYSGYYQIVVAPEDQ 1058

Query: 61   KKTIFSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDA 120
            +KT F+C +GT+A+ RMPFGLC+APGTFQRCMMSIFSD IE CIEVFMDDF VYGDS D 
Sbjct: 1059 EKTTFTCPFGTFAYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVYGDSFDR 1118

Query: 121  YLANLELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPT 180
             LANL  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D+I  LPYP+
Sbjct: 1119 CLANLSKVLHRCIESNLVLNYEKCHFMVTHGIVLGHVISSRGIEVDKSKVDLILNLPYPS 1178

Query: 181  CLKDVRSFLGSASFYRRFIKDFSKIA 207
             ++ +RSFLG A FYRRFIKDFSKIA
Sbjct: 1179 NIRGIRSFLGRAGFYRRFIKDFSKIA 1204

[Close]

BLAST of Cmc07g0193761 vs. NCBI nr
Match: XP_019158165.1 (PREDICTED: uncharacterized protein LOC109154882 [Ipomoea nil])

HSP 1 Score: 339.3 bits (869), Expect = 2.3e-89
Identity = 154/207 (74.40%), Postives = 182/207 (87.92%), Query Frame = 0


Query: 1   MQNGWRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQ 60
           +QNGWR+CIDYRKLN VT+KDHFPLPF+DQM+E LAGRSYFCFLDG+  ++QIPIA EDQ
Sbjct: 262 IQNGWRVCIDYRKLNAVTRKDHFPLPFIDQMLERLAGRSYFCFLDGYSGYFQIPIAPEDQ 321

Query: 61  KKTIFSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDA 120
           +KT F+C +GT+A+ RMPFGLCNAPGTFQRCM+SIFSD++   IEVFMDDF VYGDS D+
Sbjct: 322 EKTTFTCPFGTFAYRRMPFGLCNAPGTFQRCMVSIFSDYVGHMIEVFMDDFTVYGDSFDS 381

Query: 121 YLANLELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPT 180
            L NL LIL RCIE+NLVLN EKCHFM++ G VLGH++SS GIEVDKAK+D+I+ LPYPT
Sbjct: 382 CLHNLSLILKRCIESNLVLNSEKCHFMVNQGNVLGHVISSSGIEVDKAKVDIIESLPYPT 441

Query: 181 CLKDVRSFLGSASFYRRFIKDFSKIAL 208
            +++VRSFLG A FYRRFIKDFSKIAL
Sbjct: 442 TVREVRSFLGHAGFYRRFIKDFSKIAL 468

[Close]

BLAST of Cmc07g0193761 vs. NCBI nr
Match: XP_031402684.1 (uncharacterized protein LOC116212259 [Punica granatum])

HSP 1 Score: 339.3 bits (869), Expect = 2.3e-89
Identity = 151/206 (73.30%), Postives = 182/206 (88.35%), Query Frame = 0


Query: 1    MQNGWRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQ 60
            +QNGWR+CIDYRKLN  T+KDHFPLPF+DQM+E LAG+SYFCFLDG+  +YQI +A EDQ
Sbjct: 954  VQNGWRVCIDYRKLNAATRKDHFPLPFIDQMLERLAGKSYFCFLDGYSGYYQIVVAPEDQ 1013

Query: 61   KKTIFSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDA 120
            +KT F+C +GT+A+ RMPFGLC+APGTFQRCMMSIFSD IE CIEVFMDDF V+GDS D 
Sbjct: 1014 EKTTFTCPFGTFAYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVHGDSFDR 1073

Query: 121  YLANLELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPT 180
             LANL  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D+I  LPYP+
Sbjct: 1074 CLANLSKVLHRCIESNLVLNYEKCHFMVTHGIVLGHVISSRGIEVDKSKVDLILNLPYPS 1133

Query: 181  CLKDVRSFLGSASFYRRFIKDFSKIA 207
             ++ +RSFLG A FYRRFIKDFSKIA
Sbjct: 1134 NIRSIRSFLGHAGFYRRFIKDFSKIA 1159

[Close]

BLAST of Cmc07g0193761 vs. NCBI nr
Match: XP_021603241.1 (uncharacterized protein LOC110608326 [Manihot esculenta])

HSP 1 Score: 339.3 bits (869), Expect = 2.3e-89
Identity = 151/206 (73.30%), Postives = 181/206 (87.86%), Query Frame = 0


Query: 1   MQNGWRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQ 60
           +QNGWR+CIDYRKLN VT+KDHFPLPF+DQM+E LAG+S+FC LDGF  FYQIP+A EDQ
Sbjct: 285 VQNGWRVCIDYRKLNSVTRKDHFPLPFIDQMLERLAGKSHFCCLDGFSGFYQIPVAPEDQ 344

Query: 61  KKTIFSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDA 120
           +KT F+C +GT+A+ RMPFGLCNAP TFQRCM+SIFS+F+EK IEVFMDDF VYG+S D 
Sbjct: 345 EKTTFTCPFGTFAYRRMPFGLCNAPATFQRCMVSIFSEFVEKIIEVFMDDFTVYGNSFDE 404

Query: 121 YLANLELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPT 180
            L NL  IL RC+E+NLVLNYEKCHFM+  G++LGH VS++GIEVDKAK+DVI+ LPYPT
Sbjct: 405 CLINLTHILKRCLESNLVLNYEKCHFMVDQGLILGHTVSNRGIEVDKAKVDVIKDLPYPT 464

Query: 181 CLKDVRSFLGSASFYRRFIKDFSKIA 207
           C++D+RSFLG A FYRRFIKDFS+IA
Sbjct: 465 CIRDIRSFLGHAGFYRRFIKDFSRIA 490

[Close]

BLAST of Cmc07g0193761 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.7e-43
Identity = 85/202 (42.08%), Postives = 124/202 (61.39%), Query Frame = 0


Query: 5   WRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQKKTI 64
           +R+ IDYRKLNE+T  D  P+P +D+++  L   +YF  +D    F+QI +  E   KT 
Sbjct: 262 FRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTA 321

Query: 65  FSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDAYLAN 124
           FS  +G Y + RMPFGL NAP TFQRCM  I    + K   V++DD IV+  S D +L +
Sbjct: 322 FSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQS 381

Query: 125 LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPTCLKD 184
           L L+  +  + NL L  +KC F+      LGH+++  GI+ +  KI+ IQK P PT  K+
Sbjct: 382 LGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKE 441

Query: 185 VRSFLGSASFYRRFIKDFSKIA 207
           +++FLG   +YR+FI +F+ IA
Sbjct: 442 IKAFLGLTGYYRKFIPNFADIA 463

[Close]

BLAST of Cmc07g0193761 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 9.1e-41
Identity = 81/204 (39.71%), Postives = 122/204 (59.80%), Query Frame = 0


Query: 3   NGWRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQKK 62
           N +R+ IDYRKLNE+T  D +P+P +D+++  L    YF  +D    F+QI +  E   K
Sbjct: 259 NKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISK 318

Query: 63  TIFSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDAYL 122
           T FS   G Y + RMPFGL NAP TFQRCM +I    + K   V++DD I++  S   +L
Sbjct: 319 TAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHL 378

Query: 123 ANLELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPTCL 182
            +++L+  +  + NL L  +KC F+      LGH+V+  GI+ +  K+  I   P PT  
Sbjct: 379 NSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKD 438

Query: 183 KDVRSFLGSASFYRRFIKDFSKIA 207
           K++R+FLG   +YR+FI +++ IA
Sbjct: 439 KEIRAFLGLTGYYRKFIPNYADIA 462

[Close]

BLAST of Cmc07g0193761 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 5.0e-39
Identity = 79/202 (39.11%), Postives = 123/202 (60.89%), Query Frame = 0


Query: 5   WRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQKKTI 64
           +R+ +D+++LN VT  D +P+P ++  +  L    YF  LD    F+QI +   D  KT 
Sbjct: 178 YRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTA 237

Query: 65  FSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDAYLAN 124
           FS   G Y F R+PFGL NAP  FQR +  I  + I K   V++DD IV+ +  D +  N
Sbjct: 238 FSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKN 297

Query: 125 LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPTCLKD 184
           L L+L    + NL +N EK HF+ +    LG++V++ GI+ D  K+  I ++P PT +K+
Sbjct: 298 LRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKE 357

Query: 185 VRSFLGSASFYRRFIKDFSKIA 207
           ++ FLG  S+YR+FI+D++K+A
Sbjct: 358 LKRFLGMTSYYRKFIQDYAKVA 379

[Close]

BLAST of Cmc07g0193761 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-37
Identity = 80/201 (39.80%), Postives = 120/201 (59.70%), Query Frame = 0


Query: 6   RLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQKKTIF 65
           RL ID+RKLNE T  D +P+P +  ++ +L    +F  LD    ++QI +A  D++KT F
Sbjct: 238 RLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSF 297

Query: 66  SCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDAYLANL 125
           S N G Y F R+PFGL NA   FQR +  +  + I K   V++DD I++ ++   ++ ++
Sbjct: 298 SVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHI 357

Query: 126 ELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPTCLKDV 185
           + +L   I+ N+ ++ EK  F       LG +VS  G + D  K+  IQ+ P P C+  V
Sbjct: 358 DTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKV 417

Query: 186 RSFLGSASFYRRFIKDFSKIA 207
           RSFLG AS+YR FIKDF+ IA
Sbjct: 418 RSFLGLASYYRVFIKDFAAIA 438

[Close]

BLAST of Cmc07g0193761 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-36
Identity = 84/199 (42.21%), Postives = 109/199 (54.77%), Query Frame = 0


Query: 5   WRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQKKTI 64
           WRL IDYR++N+    D FPLP +D +++ L    YF  LD    F+QI +    +  T 
Sbjct: 370 WRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITS 429

Query: 65  FSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDAYLAN 124
           FS + G+Y F R+PFGL  AP +FQR M   FS        ++MDD IV G S    L N
Sbjct: 430 FSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKN 489

Query: 125 LELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPTCLKD 184
           L  +  +C E NL L+ EKC F M     LGH  + KGI  D  K DVIQ  P P     
Sbjct: 490 LTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADS 549

Query: 185 VRSFLGSASFYRRFIKDFS 204
            R F+   ++YRRFIK+F+
Sbjct: 550 ARRFVAFCNYYRRFIKNFA 568

[Close]

BLAST of Cmc07g0193761 vs. ExPASy TrEMBL
Match: A0A445FCZ8 (Reverse transcriptase OS=Glycine soja OX=3848 GN=D0Y65_050671 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.9e-90
Identity = 152/207 (73.43%), Postives = 183/207 (88.41%), Query Frame = 0


Query: 1   MQNGWRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQ 60
           +QN WR+CIDYR+LN+VTKKDHFPLPF+DQM+EHLAG+S++CFLDGF  + QI IA EDQ
Sbjct: 583 VQNSWRVCIDYRRLNQVTKKDHFPLPFIDQMLEHLAGKSHYCFLDGFSGYMQITIAPEDQ 642

Query: 61  KKTIFSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDA 120
           +KT F+C +GT+A+ RMPFGLCNAPGTFQRCM+SIFSDF+E CIEVFMDDF VYG S D 
Sbjct: 643 EKTTFTCPFGTFAYRRMPFGLCNAPGTFQRCMISIFSDFLENCIEVFMDDFTVYGSSFDG 702

Query: 121 YLANLELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPT 180
            L +LE +LNRCIETNLVLN+EKCHFM+  GIVLGH++S+KGIEVD AKI VI +LPYP+
Sbjct: 703 CLNSLEKVLNRCIETNLVLNFEKCHFMVEKGIVLGHIISNKGIEVDPAKISVISQLPYPS 762

Query: 181 CLKDVRSFLGSASFYRRFIKDFSKIAL 208
           C+++VRSFLG A FYRRFI+DFSK+AL
Sbjct: 763 CVREVRSFLGHAGFYRRFIRDFSKVAL 789

[Close]

BLAST of Cmc07g0193761 vs. ExPASy TrEMBL
Match: A0A6P8DCT8 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204368 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.8e-90
Identity = 152/206 (73.79%), Postives = 182/206 (88.35%), Query Frame = 0


Query: 1    MQNGWRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQ 60
            +QNGWR+CIDYRKLN  T+KDHFPLPF+DQM+E LAG+SYFCFLDG+  +YQI +A EDQ
Sbjct: 999  VQNGWRVCIDYRKLNAATRKDHFPLPFIDQMLERLAGKSYFCFLDGYSGYYQIVVAPEDQ 1058

Query: 61   KKTIFSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDA 120
            +KT F+C +GT+A+ RMPFGLC+APGTFQRCMMSIFSD IE CIEVFMDDF VYGDS D 
Sbjct: 1059 EKTTFTCPFGTFAYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVYGDSFDR 1118

Query: 121  YLANLELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPT 180
             LANL  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D+I  LPYP+
Sbjct: 1119 CLANLSKVLHRCIESNLVLNYEKCHFMVTHGIVLGHVISSRGIEVDKSKVDLILNLPYPS 1178

Query: 181  CLKDVRSFLGSASFYRRFIKDFSKIA 207
             ++ +RSFLG A FYRRFIKDFSKIA
Sbjct: 1179 NIRGIRSFLGRAGFYRRFIKDFSKIA 1204

[Close]

BLAST of Cmc07g0193761 vs. ExPASy TrEMBL
Match: A0A6P8DJV3 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116205261 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.1e-89
Identity = 151/206 (73.30%), Postives = 182/206 (88.35%), Query Frame = 0


Query: 1    MQNGWRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQ 60
            +QNGWR+CIDYRKLN  T+KDHFPLPF+DQM+E LAG+SYFCFLDG+  +YQI +A EDQ
Sbjct: 954  VQNGWRVCIDYRKLNAATRKDHFPLPFIDQMLERLAGKSYFCFLDGYSGYYQIVVAPEDQ 1013

Query: 61   KKTIFSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDA 120
            +KT F+C +GT+A+ RMPFGLC+APGTFQRCMMSIFSD IE CIEVFMDDF V+GDS D 
Sbjct: 1014 EKTTFTCPFGTFAYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVHGDSFDR 1073

Query: 121  YLANLELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPT 180
             LANL  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D+I  LPYP+
Sbjct: 1074 CLANLSKVLHRCIESNLVLNYEKCHFMVTHGIVLGHVISSRGIEVDKSKVDLILNLPYPS 1133

Query: 181  CLKDVRSFLGSASFYRRFIKDFSKIA 207
             ++ +RSFLG A FYRRFIKDFSKIA
Sbjct: 1134 NIRSIRSFLGHAGFYRRFIKDFSKIA 1159

[Close]

BLAST of Cmc07g0193761 vs. ExPASy TrEMBL
Match: A0A6P8D4X0 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204210 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.1e-89
Identity = 151/206 (73.30%), Postives = 182/206 (88.35%), Query Frame = 0


Query: 1    MQNGWRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQ 60
            +QNGWR+CIDYRKLN  T+KDHFPLPF+DQM+E LAG+SYFCFLDG+  +YQI +A EDQ
Sbjct: 954  VQNGWRVCIDYRKLNAATRKDHFPLPFIDQMLERLAGKSYFCFLDGYSGYYQIVVAPEDQ 1013

Query: 61   KKTIFSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDA 120
            +KT F+C +GT+A+ RMPFGLC+APGTFQRCMMSIFSD IE CIEVFMDDF V+GDS D 
Sbjct: 1014 EKTTFTCPFGTFAYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVHGDSFDR 1073

Query: 121  YLANLELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPT 180
             LANL  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D+I  LPYP+
Sbjct: 1074 CLANLSKVLHRCIESNLVLNYEKCHFMVTHGIVLGHVISSRGIEVDKSKVDLILNLPYPS 1133

Query: 181  CLKDVRSFLGSASFYRRFIKDFSKIA 207
             ++ +RSFLG A FYRRFIKDFSKIA
Sbjct: 1134 NIRSIRSFLGHAGFYRRFIKDFSKIA 1159

[Close]

BLAST of Cmc07g0193761 vs. ExPASy TrEMBL
Match: A0A6P8E830 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116212259 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.1e-89
Identity = 151/206 (73.30%), Postives = 182/206 (88.35%), Query Frame = 0


Query: 1    MQNGWRLCIDYRKLNEVTKKDHFPLPFLDQMIEHLAGRSYFCFLDGFFDFYQIPIACEDQ 60
            +QNGWR+CIDYRKLN  T+KDHFPLPF+DQM+E LAG+SYFCFLDG+  +YQI +A EDQ
Sbjct: 954  VQNGWRVCIDYRKLNAATRKDHFPLPFIDQMLERLAGKSYFCFLDGYSGYYQIVVAPEDQ 1013

Query: 61   KKTIFSCNYGTYAFWRMPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFIVYGDSSDA 120
            +KT F+C +GT+A+ RMPFGLC+APGTFQRCMMSIFSD IE CIEVFMDDF V+GDS D 
Sbjct: 1014 EKTTFTCPFGTFAYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVHGDSFDR 1073

Query: 121  YLANLELILNRCIETNLVLNYEKCHFMMSHGIVLGHLVSSKGIEVDKAKIDVIQKLPYPT 180
             LANL  +L+RCIE+NLVLNYEKCHFM++HGIVLGH++SS+GIEVDK+K+D+I  LPYP+
Sbjct: 1074 CLANLSKVLHRCIESNLVLNYEKCHFMVTHGIVLGHVISSRGIEVDKSKVDLILNLPYPS 1133

Query: 181  CLKDVRSFLGSASFYRRFIKDFSKIA 207
             ++ +RSFLG A FYRRFIKDFSKIA
Sbjct: 1134 NIRSIRSFLGHAGFYRRFIKDFSKIA 1159

[Close]

BLAST of Cmc07g0193761 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-07
Identity = 27/84 (32.14%), Postives = 45/84 (53.57%), Query Frame = 0


Query: 124 NLELILNRCIETNLVLNYEKCHFMMSHGIVLG--HLVSSKGIEVDKAKIDVIQKLPYPTC 183
           +L ++L    +     N +KC F       LG  H++S +G+  D AK++ +   P P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 184 LKDVRSFLGSASFYRRFIKDFSKI 206
             ++R FLG   +YRRF+K++ KI
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKI 86

The following BLAST results are available for this feature:

BLAST of Cmc07g0193761 vs. NCBI nr


Match Name	E-value	Identity	Description
RZB46718.1	6.0e-90	73.43	Transposon Ty3-G Gag-Pol polyprotein [Glycine soja]	[more]
XP_031392309.1	7.8e-90	73.79	uncharacterized protein LOC116204368 [Punica granatum]	[more]
XP_019158165.1	2.3e-89	74.40	PREDICTED: uncharacterized protein LOC109154882 [Ipomoea nil]	[more]
XP_031402684.1	2.3e-89	73.30	uncharacterized protein LOC116212259 [Punica granatum]	[more]
XP_021603241.1	2.3e-89	73.30	uncharacterized protein LOC110608326 [Manihot esculenta]	[more]

BLAST of Cmc07g0193761 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	9.7e-43	42.08	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	9.1e-41	39.71	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	5.0e-39	39.11	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	1.2e-37	39.80	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P10394	1.0e-36	42.21	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]

BLAST of Cmc07g0193761 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445FCZ8	2.9e-90	73.43	Reverse transcriptase OS=Glycine soja OX=3848 GN=D0Y65_050671 PE=4 SV=1	[more]
A0A6P8DCT8	3.8e-90	73.79	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204368 PE=4 SV=1	[more]
A0A6P8DJV3	1.1e-89	73.30	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116205261 PE=4 SV=1	[more]
A0A6P8D4X0	1.1e-89	73.30	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204210 PE=4 SV=1	[more]
A0A6P8E830	1.1e-89	73.30	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116212259 PE=4 SV=1	[more]

BLAST of Cmc07g0193761 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.8e-07	32.14	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 167..208 e-value: 3.0E-12 score: 48.4
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 23..158 e-value: 5.5E-50 score: 171.6
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..150 e-value: 8.7E-19 score: 67.9
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 3..83 e-value: 5.5E-50 score: 171.6
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 5..205
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 5..205
None	No IPR available	CDD	cd01647	RT_LTR	coord: 3..158 e-value: 9.0739E-68 score: 203.596
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0193761.1	Cmc07g0193761.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004672	protein kinase activity