Cmc07g0193661 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0193661
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 15485760 .. 15486485 (+)
RNA-Seq Expression	Cmc07g0193661
Synteny	Cmc07g0193661

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACTCAAGGTTGGAATGAGAGATTTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGAAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTACATATTTGTTCGGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAAAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCCGAATAACATTACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCGGATCGGGAGATTGGTAAAGAATGGACTTCTAAACGAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGTGCCAAAGAGCCTTTAGAACTTATACATTTAGACCTCTGTGGTCCAATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTTTTTTATAGATGACTATTCTAGGTATGGTTATTCATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTTGA

mRNA sequence

ATGACACTCAAGGTTGGAATGAGAGATTTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGAAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTACATATTTGTTCGGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAAAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCCGAATAACATTACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCGGATCGGGAGATTGGTAAAGAATGGACTTCTAAACGAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGTGCCAAAGAGCCTTTAGAACTTATACATTTAGACCTCTGTGGTCCAATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTTTTTTATAGATGACTATTCTAGGTATGGTTATTCATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTTGA

Coding sequence (CDS)

ATGACACTCAAGGTTGGAATGAGAGATTTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGAAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTACATATTTGTTCGGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAAAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCCGAATAACATTACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCGGATCGGGAGATTGGTAAAGAATGGACTTCTAAACGAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGTGCCAAAGAGCCTTTAGAACTTATACATTTAGACCTCTGTGGTCCAATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTTTTTTATAGATGACTATTCTAGGTATGGTTATTCATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTTGA

Protein sequence

MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITYLWHLRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

Homology

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BLAST of Cmc07g0193661 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 454.5 bits (1168), Expect = 5.6e-124
Identity = 226/241 (93.78%), Postives = 230/241 (95.44%), Query Frame = 0


Query: 1   MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVG  D ISARAVGDAKLFFGNKFMFL+NLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITYLWH 120
           NEAFI KNGVHICSAKLENNLYVLRPNEAKAVLNHEMF+TANTQNKRQRISPNN TYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHL 180
           LRLGHINLDRIGRLVKNGLLN+L+D SLPPCESCLEGKMTKRPFTGKGY AKEPLELIH 
Sbjct: 353 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKARGGFEYFI FIDDYSRYGY YLMEHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 L 242
           L
Sbjct: 473 L 473

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BLAST of Cmc07g0193661 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 448.7 bits (1153), Expect = 3.1e-122
Identity = 223/240 (92.92%), Postives = 228/240 (95.00%), Query Frame = 0


Query: 1   MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVG  D ISARAVGDAKLFFGNKFMFL+NLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITYLWH 120
           NEAFI KNGVHICSAKLENNLYVLRPNEAKAVLNHEMF+TANTQNKRQRISPNN TYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHL 180
           LRLGHINLDRIGRLVK+GLLN+L+D SLPPCESCLEGKMTKRPFTGKGY AKEPLELIH 
Sbjct: 353 LRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKARG FEYFI FIDDYSRYGY YLMEHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

[Close]

BLAST of Cmc07g0193661 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 441.4 bits (1134), Expect = 4.9e-120
Identity = 219/241 (90.87%), Postives = 226/241 (93.78%), Query Frame = 0


Query: 1   MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           M LKVG  D ISARAVGDAKLFFGNKFMFL+NLYIVPKIKRNLVSVSCLIEHMYSI+FSM
Sbjct: 205 MILKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSM 264

Query: 61  NEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITYLWH 120
           NEAFISKNGVHICS KLE+NLYVL+PNE KAVLNHEMF+TANTQNKRQRIS NN TYLWH
Sbjct: 265 NEAFISKNGVHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWH 324

Query: 121 LRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHL 180
           LRLGHINLDRIGRLVKNGLLN+LEDDSLPPCESCLEGKMTKRPFTGKGY AKEPLELIH 
Sbjct: 325 LRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 384

Query: 181 DLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKA GGFEYFI FIDDYS YGY YL+EHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 385 DLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKI 444

Query: 241 L 242
           L
Sbjct: 445 L 445

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BLAST of Cmc07g0193661 vs. NCBI nr
Match: KAA0067938.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 423.7 bits (1088), Expect = 1.1e-114
Identity = 215/241 (89.21%), Postives = 220/241 (91.29%), Query Frame = 0


Query: 1   MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTL VG  D ISARAVGD KLFFG KFMFL+NLYIVPKIKRNLV VSCLIEHMYSINFSM
Sbjct: 208 MTLMVGTGDVISARAVGDVKLFFGIKFMFLENLYIVPKIKRNLVFVSCLIEHMYSINFSM 267

Query: 61  NEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITYLWH 120
           NEAFISKNG     AKLE+NLYVLRPNEAKAVLNHEMF+TANTQNKRQRISPNN TYLWH
Sbjct: 268 NEAFISKNG-----AKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 327

Query: 121 LRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHL 180
           LRL HINLDRIGRLVKNGLLN+L+DDSLPPCESCLEGKMTKRPFTGK Y AKEPLELIH 
Sbjct: 328 LRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKDYRAKEPLELIHS 387

Query: 181 DLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKARGGFEYFI FIDDYSRYGY YLMEHK EALEKFKEYK EVENLLSKKIKI
Sbjct: 388 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKYEALEKFKEYKTEVENLLSKKIKI 443

Query: 241 L 242
           L
Sbjct: 448 L 443

[Close]

BLAST of Cmc07g0193661 vs. NCBI nr
Match: KAA0046415.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 3.9e-93
Identity = 174/239 (72.80%), Postives = 199/239 (83.26%), Query Frame = 0


Query: 1   MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MT++VG    ISA AVG  +L     F+ L+N+Y+VP +KRNL+SV CL+E  YS+ F++
Sbjct: 336 MTMRVGTGHVISAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNV 395

Query: 61  NEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITYLWH 120
           N+ FI KNGV ICSAKLENNLYVLR   +KA+LN EMFKTA TQNKR +ISP    +LWH
Sbjct: 396 NKVFIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWH 455

Query: 121 LRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHL 180
           LRLGHINL+RI RLVKNGLL+ELE++SLP CESCLEGKMTKRPFTGKG+ AKEPLEL+H 
Sbjct: 456 LRLGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHS 515

Query: 181 DLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIK 240
           DLCGPMNVKARGGFEYFI F DDYSRYGY YLM+HKSEALEKFKEYKAEVEN LSK IK
Sbjct: 516 DLCGPMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIK 574

[Close]

BLAST of Cmc07g0193661 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.9e-19
Identity = 65/241 (26.97%), Postives = 115/241 (47.72%), Query Frame = 0


Query: 2   TLKVGMRDFISARAVGDAKLFFG-NKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSM 61
           T+K+G   +     +GD  +       + LK++  VP ++ NL+S   L    Y   F+ 
Sbjct: 321 TVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFAN 380

Query: 62  NEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITYLWH 121
            +  ++K  + I        LY       +  LN            +  IS +    LWH
Sbjct: 381 QKWRLTKGSLVIAKGVARGTLYRTNAEICQGELN----------AAQDEISVD----LWH 440

Query: 122 LRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHL 181
            R+GH++   +  L K  L++  +  ++ PC+ CL GK  +  F          L+L++ 
Sbjct: 441 KRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYS 500

Query: 182 DLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKI 241
           D+CGPM +++ GG +YF+ FIDD SR  + Y+++ K +  + F+++ A VE    +K+K 
Sbjct: 501 DVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKR 547

[Close]

BLAST of Cmc07g0193661 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-15
Identity = 67/221 (30.32%), Postives = 107/221 (48.42%), Query Frame = 0


Query: 30  LKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHIC-SAKLENNLYVLRPNE 89
           L+++    +   NL+SV  L E   SI F  +   ISKNG+ +  ++ + NN+       
Sbjct: 345 LEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNV------- 404

Query: 90  AKAVLNHEMFKTANTQNKRQRISPNNITYLWHLRLGHIN------LDRIGRLVKNGLLNE 149
              V+N + + + N ++K      NN   LWH R GHI+      + R        LLN 
Sbjct: 405 --PVINFQAY-SINAKHK------NNFR-LWHERFGHISDGKLLEIKRKNMFSDQSLLNN 464

Query: 150 LEDDSLPPCESCLEGKMTKRPF--TGKGYSAKEPLELIHLDLCGPMNVKARGGFEYFIFF 209
           LE  S   CE CL GK  + PF         K PL ++H D+CGP+         YF+ F
Sbjct: 465 LE-LSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIF 524

Query: 210 IDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKIL 242
           +D ++ Y  +YL+++KS+    F+++ A+ E   + K+  L
Sbjct: 525 VDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYL 547

[Close]

BLAST of Cmc07g0193661 vs. ExPASy Swiss-Prot
Match: Q07791 (Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-DR3 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.5e-07
Identity = 61/245 (24.90%), Postives = 102/245 (41.63%), Query Frame = 0


Query: 11  ISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGV 70
           I   A+G+    F N           P I  +L+S+S L     +  F+ N      +G 
Sbjct: 490 IPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRN-TLERSDGT 549

Query: 71  HICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITY-LWHLRLGHINLD 130
            +       + Y L  ++   + +H    T N  NK +  S N   Y L H  LGH N  
Sbjct: 550 VLAPIVKHGDFYWL--SKKYLIPSHISKLTINNVNKSK--SVNKYPYPLIHRMLGHANFR 609

Query: 131 RIGRLVKNGLLNELEDDSLP-------PCESCLEGKMTK-RPFTG---KGYSAKEPLELI 190
            I + +K   +  L++  +         C  CL GK TK R   G   K   + EP + +
Sbjct: 610 SIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHIKGSRLKYQESYEPFQYL 669

Query: 191 HLDLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSE--ALEKFKEYKAEVENLLSK 242
           H D+ GP++   +    YFI F D+ +R+ + Y +  + E   L  F    A ++N  + 
Sbjct: 670 HTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNA 729

[Close]

BLAST of Cmc07g0193661 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.8e-07
Identity = 61/245 (24.90%), Postives = 102/245 (41.63%), Query Frame = 0


Query: 11  ISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGV 70
           I   A+G+    F N           P I  +L+S+S L     +  F+ N      +G 
Sbjct: 490 IPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRN-TLERSDGT 549

Query: 71  HICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITY-LWHLRLGHINLD 130
            +       + Y L  ++   + +H    T N  NK +  S N   Y L H  LGH N  
Sbjct: 550 VLAPIVKHGDFYWL--SKKYLIPSHISKLTINNVNKSK--SVNKYPYPLIHRMLGHANFR 609

Query: 131 RIGRLVKNGLLNELEDDSLP-------PCESCLEGKMTK-RPFTG---KGYSAKEPLELI 190
            I + +K   +  L++  +         C  CL GK TK R   G   K   + EP + +
Sbjct: 610 SIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYL 669

Query: 191 HLDLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSE--ALEKFKEYKAEVENLLSK 242
           H D+ GP++   +    YFI F D+ +R+ + Y +  + E   L  F    A ++N  + 
Sbjct: 670 HTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNA 729

[Close]

BLAST of Cmc07g0193661 vs. ExPASy Swiss-Prot
Match: P25384 (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-C PE=3 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 5.8e-07
Identity = 61/245 (24.90%), Postives = 102/245 (41.63%), Query Frame = 0


Query: 11  ISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGV 70
           I   A+G+    F N           P I  +L+S+S L     +  F+ N      +G 
Sbjct: 490 IPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRN-TLERSDGT 549

Query: 71  HICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITY-LWHLRLGHINLD 130
            +       + Y L  ++   + +H    T N  NK +  S N   Y L H  LGH N  
Sbjct: 550 VLAPIVKHGDFYWL--SKKYLIPSHISKLTINNVNKSK--SVNKYPYPLIHRMLGHANFR 609

Query: 131 RIGRLVKNGLLNELEDDSLP-------PCESCLEGKMTK-RPFTG---KGYSAKEPLELI 190
            I + +K   +  L++  +         C  CL GK TK R   G   K   + EP + +
Sbjct: 610 SIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYL 669

Query: 191 HLDLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSE--ALEKFKEYKAEVENLLSK 242
           H D+ GP++   +    YFI F D+ +R+ + Y +  + E   L  F    A ++N  + 
Sbjct: 670 HTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNA 729

[Close]

BLAST of Cmc07g0193661 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 2.7e-124
Identity = 226/241 (93.78%), Postives = 230/241 (95.44%), Query Frame = 0


Query: 1   MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVG  D ISARAVGDAKLFFGNKFMFL+NLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITYLWH 120
           NEAFI KNGVHICSAKLENNLYVLRPNEAKAVLNHEMF+TANTQNKRQRISPNN TYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHL 180
           LRLGHINLDRIGRLVKNGLLN+L+D SLPPCESCLEGKMTKRPFTGKGY AKEPLELIH 
Sbjct: 353 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKARGGFEYFI FIDDYSRYGY YLMEHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 L 242
           L
Sbjct: 473 L 473

[Close]

BLAST of Cmc07g0193661 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.5e-122
Identity = 223/240 (92.92%), Postives = 228/240 (95.00%), Query Frame = 0


Query: 1   MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVG  D ISARAVGDAKLFFGNKFMFL+NLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITYLWH 120
           NEAFI KNGVHICSAKLENNLYVLRPNEAKAVLNHEMF+TANTQNKRQRISPNN TYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHL 180
           LRLGHINLDRIGRLVK+GLLN+L+D SLPPCESCLEGKMTKRPFTGKGY AKEPLELIH 
Sbjct: 353 LRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKARG FEYFI FIDDYSRYGY YLMEHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

[Close]

BLAST of Cmc07g0193661 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 2.4e-120
Identity = 219/241 (90.87%), Postives = 226/241 (93.78%), Query Frame = 0


Query: 1   MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           M LKVG  D ISARAVGDAKLFFGNKFMFL+NLYIVPKIKRNLVSVSCLIEHMYSI+FSM
Sbjct: 205 MILKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSM 264

Query: 61  NEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITYLWH 120
           NEAFISKNGVHICS KLE+NLYVL+PNE KAVLNHEMF+TANTQNKRQRIS NN TYLWH
Sbjct: 265 NEAFISKNGVHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWH 324

Query: 121 LRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHL 180
           LRLGHINLDRIGRLVKNGLLN+LEDDSLPPCESCLEGKMTKRPFTGKGY AKEPLELIH 
Sbjct: 325 LRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 384

Query: 181 DLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKA GGFEYFI FIDDYS YGY YL+EHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 385 DLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKI 444

Query: 241 L 242
           L
Sbjct: 445 L 445

[Close]

BLAST of Cmc07g0193661 vs. ExPASy TrEMBL
Match: A0A5A7VJG3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001110 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.1e-115
Identity = 215/241 (89.21%), Postives = 220/241 (91.29%), Query Frame = 0


Query: 1   MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTL VG  D ISARAVGD KLFFG KFMFL+NLYIVPKIKRNLV VSCLIEHMYSINFSM
Sbjct: 208 MTLMVGTGDVISARAVGDVKLFFGIKFMFLENLYIVPKIKRNLVFVSCLIEHMYSINFSM 267

Query: 61  NEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITYLWH 120
           NEAFISKNG     AKLE+NLYVLRPNEAKAVLNHEMF+TANTQNKRQRISPNN TYLWH
Sbjct: 268 NEAFISKNG-----AKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 327

Query: 121 LRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHL 180
           LRL HINLDRIGRLVKNGLLN+L+DDSLPPCESCLEGKMTKRPFTGK Y AKEPLELIH 
Sbjct: 328 LRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKDYRAKEPLELIHS 387

Query: 181 DLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKARGGFEYFI FIDDYSRYGY YLMEHK EALEKFKEYK EVENLLSKKIKI
Sbjct: 388 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKYEALEKFKEYKTEVENLLSKKIKI 443

Query: 241 L 242
           L
Sbjct: 448 L 443

[Close]

BLAST of Cmc07g0193661 vs. ExPASy TrEMBL
Match: A0A5A7TYF5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001600 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.9e-93
Identity = 174/239 (72.80%), Postives = 199/239 (83.26%), Query Frame = 0


Query: 1   MTLKVGMRDFISARAVGDAKLFFGNKFMFLKNLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MT++VG    ISA AVG  +L     F+ L+N+Y+VP +KRNL+SV CL+E  YS+ F++
Sbjct: 336 MTMRVGTGHVISAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNV 395

Query: 61  NEAFISKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFKTANTQNKRQRISPNNITYLWH 120
           N+ FI KNGV ICSAKLENNLYVLR   +KA+LN EMFKTA TQNKR +ISP    +LWH
Sbjct: 396 NKVFIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWH 455

Query: 121 LRLGHINLDRIGRLVKNGLLNELEDDSLPPCESCLEGKMTKRPFTGKGYSAKEPLELIHL 180
           LRLGHINL+RI RLVKNGLL+ELE++SLP CESCLEGKMTKRPFTGKG+ AKEPLEL+H 
Sbjct: 456 LRLGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHS 515

Query: 181 DLCGPMNVKARGGFEYFIFFIDDYSRYGYSYLMEHKSEALEKFKEYKAEVENLLSKKIK 240
           DLCGPMNVKARGGFEYFI F DDYSRYGY YLM+HKSEALEKFKEYKAEVEN LSK IK
Sbjct: 516 DLCGPMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIK 574

The following BLAST results are available for this feature:

BLAST of Cmc07g0193661 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	5.6e-124	93.78	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	3.1e-122	92.92	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060534.1	4.9e-120	90.87	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0067938.1	1.1e-114	89.21	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0046415.1	3.9e-93	72.80	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0193661 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.9e-19	26.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.5e-15	30.32	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q07791	4.5e-07	24.90	Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
Q12491	5.8e-07	24.90	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P25384	5.8e-07	24.90	Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc07g0193661 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	2.7e-124	93.78	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7T2V9	1.5e-122	92.92	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3BNE1	2.4e-120	90.87	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7VJG3	5.1e-115	89.21	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0011...	[more]
A0A5A7TYF5	1.9e-93	72.80	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0016...	[more]

BLAST of Cmc07g0193661 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 216..236
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 169..235 e-value: 7.2E-9 score: 37.2
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 81..159 e-value: 8.8E-13 score: 47.9
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 170..237

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0193661.1	Cmc07g0193661.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding