Cmc07g0193261 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0193261
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Zinc finger, CW-type
Location	CMiso1.1chr07: 14659398 .. 14660653 (+)
RNA-Seq Expression	Cmc07g0193261
Synteny	Cmc07g0193261

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGTGAGTTGGTGTAATTTCTTATGTGGATTCATGTTTGATTGCAGATTGCTGCTTTGCATTATGGGCTGTTGGATGCATTTTTGTTGAGCTTTTGACATTGAAGCCTTTGATTCAAGGTCAAGAAGTCAAAGGGCCTCTGAATCCTTTCAAGGTATACGAATTACTTCTTTTGTTTCCATTTCTTCTACATATATATGATGTTCGTTAATTATGAGTTGTTTATTTGTTAATTAAATATCACAAGCTGGATAAGTATGAAGTTGTTTGTTAATTACCAGGATAATTAGGGAAACAAAATAAATTAAATGTCAATCTTATACATAGTATTTGGATTGTTTATTTTCTTCTATCTATATGGGAACTACTAGGCATTTGTGTTGTGGTGTGTAGCAAGATCAAAGGTCAGACTTTTACTTTTACTTTGGATGTAATTCTCTTGTTTTTTTATTTGTACAAATGTAATTGTCGTGGGTTGGATTTTCAATTTTGCTGTGGGTGTTAATGCATTTTTTAACTTATTGATCGGGATGTAAAACTTCAACATGTTCAGGACACTTTCAGAAAGATTTTGAAGGTGGATTCTCTGCAGAAAATTTGGGTAAAGTTGAAACACAATAGAATGATGGCTCTTTTTGGTTCTTGTGGTATGATAACTTTAGATGTCTTCTTTGAAGTAAAAATTGGATGTTGATATGCTTACCATAGGGGAAAAATTTTGTGGATATGATTCATTTTTTCCTTACTATTAACGAACTCCAGTTTGGTCCCATTCAAAGACTCCACCAAAAGGCCAAAATTGCATTACATCTCGATCTCCCAATAATTTTCACCAGGAGGTAAACTTGTATTTTTTTTTCTTCTCTTTGATAATTGGTCATTTTTAATTTGGTCATTGATGATGGCCTTATTGAGCCGCGAATAAGTGTTTCTATTTAGGTTGGGCATAATAACTCTGTAGATTCATAAACTACACCTCAGTCCATACAACCCGAATCCCCTTCTACCAGTTCAACGTCCCTGCCCATAATCAAATGTGTATACAATATTTGAGGCTATTACTAAAGAGTATATTAGATATGTAACATACACATGATGTTTATACATGAAGGTTTATGATGTTGATTCATATTAGATGTGTAACCGACATATGATGTTTAGACATAGTATGTAACGACCAACTATGTATTGTTTAATGATATATGCAATTGTTCAGTTAATATGTGTCGTTTAGTAACTTTGTGTGATAAGTATGGA

mRNA sequence

GCATTGCTGCTTTGCATTATGGGCTGTTGGATGCATTTTTGTTGAGCTTTTGACATTGAAGCCTTTGATTCAAGGTCAAGAAGTCAAAGGGCCTCTGAATCCTTTCAAGGACACTTTCAGAAAGATTTTGAAGGTGGATTCTCTGCAGAAAATTTGGGTAAAGTTGAAACACAATAGAATGATGGCTCTTTTTGGTTCTTGTGTTTGGTCCCATTCAAAGACTCCACCAAAAGGCCAAAATTGCATTACATCTCGATCTCCCAATAATTTTCACCAGGAGGTTGGGCATAATAACTCTGTAGATTCATAAACTACACCTCAGTCCATACAACCCGAATCCCCTTCTACCAGTTCAACGTCCCTGCCCATAATCAAATGTGTATACAATATTTGAGGCTATTACTAAAGAGTATATTAGATATGTAACATACACATGATGTTTATACATGAAGGTTTATGATGTTGATTCATATTAGATGTGTAACCGACATATGATGTTTAGACATAGTATGTAACGACCAACTATGTATTGTTTAATGATATATGCAATTGTTCAGTTAATATGTGTCGTTTAGTAACTTTGTGTGATAAGTATGGA

Coding sequence (CDS)

ATGATGGCTCTTTTTGGTTCTTGTGTTTGGTCCCATTCAAAGACTCCACCAAAAGGCCAAAATTGCATTACATCTCGATCTCCCAATAATTTTCACCAGGAGGTTGGGCATAATAACTCTGTAGATTCATAA

Protein sequence

MMALFGSCVWSHSKTPPKGQNCITSRSPNNFHQEVGHNNSVDS

Homology

[Close]

BLAST of Cmc07g0193261 vs. NCBI nr
Match: KAA0068034.1 (Zinc finger, CW-type [Cucumis melo var. makuwa] >TYK18094.1 Zinc finger, CW-type [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 4.1e-09
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 7   SCVWSHSKTPPKGQNCITSRSPNNFHQEVGHNNSVDS 44
           S VWSHS+TPPKG NC TSRSPNNFHQEVGHNNSV S
Sbjct: 106 SPVWSHSRTPPKGHNCSTSRSPNNFHQEVGHNNSVVS 142

[Close]

BLAST of Cmc07g0193261 vs. NCBI nr
Match: XP_008451617.1 (PREDICTED: uncharacterized protein LOC103492851 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 4.1e-09
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 7   SCVWSHSKTPPKGQNCITSRSPNNFHQEVGHNNSVDS 44
           S VWSHS+TPPKG NC TSRSPNNFHQEVGHNNSV S
Sbjct: 74  SPVWSHSRTPPKGHNCSTSRSPNNFHQEVGHNNSVVS 110

[Close]

BLAST of Cmc07g0193261 vs. NCBI nr
Match: XP_031744999.1 (uncharacterized protein LOC101205723 [Cucumis sativus] >XP_031745000.1 uncharacterized protein LOC101205723 [Cucumis sativus] >KGN44901.1 hypothetical protein Csa_015638 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 7   SCVWSHSKTPPKGQNCITSRSPNNFHQEVGHNNSVDS 44
           S VWSHS+TPPKG NC TSRSPNNFH EVGHNNSV S
Sbjct: 74  SPVWSHSRTPPKGHNCSTSRSPNNFHLEVGHNNSVVS 110

[Close]

BLAST of Cmc07g0193261 vs. NCBI nr
Match: XP_038876721.1 (cysteine-tryptophan domain-containing zinc finger protein 7-like isoform X1 [Benincasa hispida] >XP_038876722.1 cysteine-tryptophan domain-containing zinc finger protein 7-like isoform X1 [Benincasa hispida])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 7   SCVWSHSKTPPKGQNCITSRSPNNFHQEVGHNNSVDS 44
           S VWSHS+TPPKG N  TSRSPNNFHQEVGHNNSV S
Sbjct: 95  SPVWSHSRTPPKGHNGSTSRSPNNFHQEVGHNNSVVS 131

[Close]

BLAST of Cmc07g0193261 vs. NCBI nr
Match: XP_038876723.1 (cysteine-tryptophan domain-containing zinc finger protein 7-like isoform X2 [Benincasa hispida] >XP_038876724.1 cysteine-tryptophan domain-containing zinc finger protein 7-like isoform X2 [Benincasa hispida])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 7   SCVWSHSKTPPKGQNCITSRSPNNFHQEVGHNNSVDS 44
           S VWSHS+TPPKG N  TSRSPNNFHQEVGHNNSV S
Sbjct: 74  SPVWSHSRTPPKGHNGSTSRSPNNFHQEVGHNNSVVS 110

[Close]

BLAST of Cmc07g0193261 vs. ExPASy TrEMBL
Match: A0A5D3D3G1 (Zinc finger, CW-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00150 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 7   SCVWSHSKTPPKGQNCITSRSPNNFHQEVGHNNSVDS 44
           S VWSHS+TPPKG NC TSRSPNNFHQEVGHNNSV S
Sbjct: 106 SPVWSHSRTPPKGHNCSTSRSPNNFHQEVGHNNSVVS 142

[Close]

BLAST of Cmc07g0193261 vs. ExPASy TrEMBL
Match: A0A1S3BRW4 (uncharacterized protein LOC103492851 OS=Cucumis melo OX=3656 GN=LOC103492851 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 7   SCVWSHSKTPPKGQNCITSRSPNNFHQEVGHNNSVDS 44
           S VWSHS+TPPKG NC TSRSPNNFHQEVGHNNSV S
Sbjct: 74  SPVWSHSRTPPKGHNCSTSRSPNNFHQEVGHNNSVVS 110

[Close]

BLAST of Cmc07g0193261 vs. ExPASy TrEMBL
Match: A0A0A0KAS6 (CW-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G394700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 7   SCVWSHSKTPPKGQNCITSRSPNNFHQEVGHNNSVDS 44
           S VWSHS+TPPKG NC TSRSPNNFH EVGHNNSV S
Sbjct: 74  SPVWSHSRTPPKGHNCSTSRSPNNFHLEVGHNNSVVS 110

[Close]

BLAST of Cmc07g0193261 vs. ExPASy TrEMBL
Match: A0A6J1D222 (uncharacterized protein LOC111016289 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016289 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 7   SCVWSHSKTPPKGQNCITSRSPNNFHQEVGHNNSVDS 44
           S VWSH++TPPKG NC TSRSPNNF QE GHNNSV S
Sbjct: 104 SPVWSHTRTPPKGHNCSTSRSPNNFQQEAGHNNSVVS 140

[Close]

BLAST of Cmc07g0193261 vs. ExPASy TrEMBL
Match: A0A6J1D0P8 (uncharacterized protein LOC111016289 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111016289 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 7   SCVWSHSKTPPKGQNCITSRSPNNFHQEVGHNNSVDS 44
           S VWSH++TPPKG NC TSRSPNNF QE GHNNSV S
Sbjct: 74  SPVWSHTRTPPKGHNCSTSRSPNNFQQEAGHNNSVVS 110

The following BLAST results are available for this feature:

BLAST of Cmc07g0193261 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068034.1	4.1e-09	86.49	Zinc finger, CW-type [Cucumis melo var. makuwa] >TYK18094.1 Zinc finger, CW-type...	[more]
XP_008451617.1	4.1e-09	86.49	PREDICTED: uncharacterized protein LOC103492851 [Cucumis melo]	[more]
XP_031744999.1	2.6e-08	83.78	uncharacterized protein LOC101205723 [Cucumis sativus] >XP_031745000.1 uncharact...	[more]
XP_038876721.1	1.0e-07	83.78	cysteine-tryptophan domain-containing zinc finger protein 7-like isoform X1 [Ben...	[more]
XP_038876723.1	1.0e-07	83.78	cysteine-tryptophan domain-containing zinc finger protein 7-like isoform X2 [Ben...	[more]

BLAST of Cmc07g0193261 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc07g0193261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D3G1	2.0e-09	86.49	Zinc finger, CW-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411...	[more]
A0A1S3BRW4	2.0e-09	86.49	uncharacterized protein LOC103492851 OS=Cucumis melo OX=3656 GN=LOC103492851 PE=...	[more]
A0A0A0KAS6	1.3e-08	83.78	CW-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G394700 PE=...	[more]
A0A6J1D222	1.1e-07	78.38	uncharacterized protein LOC111016289 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1D0P8	1.1e-07	78.38	uncharacterized protein LOC111016289 isoform X3 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Cmc07g0193261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0193261.1	Cmc07g0193261.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding