Cmc07g0193221 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0193221
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 14566506 .. 14567045 (-)
RNA-Seq Expression	Cmc07g0193221
Synteny	Cmc07g0193221

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTTTTCAGTGGAAGGCATTTGTGCTGATCCTCAGAAAACTGAAGCAGAAGACAAGTGGGAAAGACCTACCTCCGTCACTAAGATCCGAAGTTTTCTTGGTTTAGCGGGGTATTATCGCCGATTTGTGGAAGGGTTTTCTAAATTGGCACTTCCATTAACCAACCTAACCAGGAAAAATGTAAAGTTTGAATGGATAGATGCTTGTGAATGGAGTTTTCAAGAGTTAAAGAAAAGGCTTGTAACAGCTTCAATTTTAACAATTCTGACTCCTGGTATAGAATTCGAGATCTATTGTGATGCTTCTCATCAAGGTTTGGGTTGTGTATTGATGCAAAAAGGAAAGGTAGTGGCTTATGCTTCTAGACAGTTAAAGAAGCATGAATGTAATTACCCTACCCATGACTTAGAACTGGCAGCATTAGTGCTTGCATTAAAGCTTTGGCGACATTACCTTTATGGTGAGAGATGTCATATATTCACTAATCATAAAAGCTTGAAATACATATTTGATCAGAAGGAAATAAATCTAAGATAG

mRNA sequence

ATGTGGTTTTCAGTGGAAGGCATTTGTGCTGATCCTCAGAAAACTGAAGCAGAAGACAAGTGGGAAAGACCTACCTCCGTCACTAAGATCCGAAGTTTTCTTGGTTTAGCGGGGTATTATCGCCGATTTGTGGAAGGGTTTTCTAAATTGGCACTTCCATTAACCAACCTAACCAGGAAAAATGTAAAGTTTGAATGGATAGATGCTTGTGAATGGAGTTTTCAAGAGTTAAAGAAAAGGCTTGTAACAGCTTCAATTTTAACAATTCTGACTCCTGGTATAGAATTCGAGATCTATTGTGATGCTTCTCATCAAGGTTTGGGTTGTGTATTGATGCAAAAAGGAAAGGTAGTGGCTTATGCTTCTAGACAGTTAAAGAAGCATGAATGTAATTACCCTACCCATGACTTAGAACTGGCAGCATTAGTGCTTGCATTAAAGCTTTGGCGACATTACCTTTATGGTGAGAGATGTCATATATTCACTAATCATAAAAGCTTGAAATACATATTTGATCAGAAGGAAATAAATCTAAGATAG

Coding sequence (CDS)

ATGTGGTTTTCAGTGGAAGGCATTTGTGCTGATCCTCAGAAAACTGAAGCAGAAGACAAGTGGGAAAGACCTACCTCCGTCACTAAGATCCGAAGTTTTCTTGGTTTAGCGGGGTATTATCGCCGATTTGTGGAAGGGTTTTCTAAATTGGCACTTCCATTAACCAACCTAACCAGGAAAAATGTAAAGTTTGAATGGATAGATGCTTGTGAATGGAGTTTTCAAGAGTTAAAGAAAAGGCTTGTAACAGCTTCAATTTTAACAATTCTGACTCCTGGTATAGAATTCGAGATCTATTGTGATGCTTCTCATCAAGGTTTGGGTTGTGTATTGATGCAAAAAGGAAAGGTAGTGGCTTATGCTTCTAGACAGTTAAAGAAGCATGAATGTAATTACCCTACCCATGACTTAGAACTGGCAGCATTAGTGCTTGCATTAAAGCTTTGGCGACATTACCTTTATGGTGAGAGATGTCATATATTCACTAATCATAAAAGCTTGAAATACATATTTGATCAGAAGGAAATAAATCTAAGATAG

Protein sequence

MWFSVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR

Homology

[Close]

BLAST of Cmc07g0193221 vs. NCBI nr
Match: KAA0042458.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK22918.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 335.5 bits (859), Expect = 2.8e-88
Identity = 156/175 (89.14%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 5   VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKF 64
           +EGIC DPQKTEA DKW+RP SVT+IRSFLGLAGYYRRF+EGFSKLALPLTNLTRKNVKF
Sbjct: 1   MEGICVDPQKTEAVDKWKRPISVTEIRSFLGLAGYYRRFMEGFSKLALPLTNLTRKNVKF 60

Query: 65  EWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASRQ 124
           EW DACE SFQELKKRLVTA +LT+  PG+EFEIYCDASHQGLGCVLMQKGKVVAYASRQ
Sbjct: 61  EWTDACERSFQELKKRLVTAPVLTLPIPGVEFEIYCDASHQGLGCVLMQKGKVVAYASRQ 120

Query: 125 LKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR 180
           LKKHECNYPTHDLELAA+VLALKLWRHYLYGERCHIF +HKSLKYIFDQKE+NLR
Sbjct: 121 LKKHECNYPTHDLELAAVVLALKLWRHYLYGERCHIFIDHKSLKYIFDQKELNLR 175

[Close]

BLAST of Cmc07g0193221 vs. NCBI nr
Match: TYK13961.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85
Identity = 152/176 (86.36%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 4   SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVK 63
           S+EGIC DP+K EA DK ERPTS+T+I+SFLGL+ YYR+ VEGFSKLALPLTNLTRKNVK
Sbjct: 356 SMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYRQLVEGFSKLALPLTNLTRKNVK 415

Query: 64  FEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASR 123
           FEW DAC WSFQELKKRLVT  +LT+LTPGIEFEIY DASHQGLGCVLMQKGKVVAYASR
Sbjct: 416 FEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFDASHQGLGCVLMQKGKVVAYASR 475

Query: 124 QLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR 180
           QLKKHECNYPTHDLELA +VLALKLWRHYLYGERCHIFT+HKSLKYIFDQKE+NLR
Sbjct: 476 QLKKHECNYPTHDLELATVVLALKLWRHYLYGERCHIFTDHKSLKYIFDQKELNLR 531

[Close]

BLAST of Cmc07g0193221 vs. NCBI nr
Match: KAA0037114.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85
Identity = 152/176 (86.36%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 4   SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVK 63
           S+EGIC DP+K EA DK ERPTS+T+I+SFLGL+ YYR+ VEGFSKLALPLTNLTRKNVK
Sbjct: 425 SMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYRQLVEGFSKLALPLTNLTRKNVK 484

Query: 64  FEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASR 123
           FEW DAC WSFQELKKRLVT  +LT+LTPGIEFEIY DASHQGLGCVLMQKGKVVAYASR
Sbjct: 485 FEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFDASHQGLGCVLMQKGKVVAYASR 544

Query: 124 QLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR 180
           QLKKHECNYPTHDLELA +VLALKLWRHYLYGERCHIFT+HKSLKYIFDQKE+NLR
Sbjct: 545 QLKKHECNYPTHDLELATVVLALKLWRHYLYGERCHIFTDHKSLKYIFDQKELNLR 600

[Close]

BLAST of Cmc07g0193221 vs. NCBI nr
Match: KAA0047049.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-83
Identity = 151/175 (86.29%), Postives = 162/175 (92.57%), Query Frame = 0


Query: 5   VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKF 64
           VE I   PQKTEA DKWERPTSVT+IRSFLGLAGYYRRFVEGFSKL+L LTNLTRKNVKF
Sbjct: 322 VEDIYVGPQKTEAIDKWERPTSVTEIRSFLGLAGYYRRFVEGFSKLSLALTNLTRKNVKF 381

Query: 65  EWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASRQ 124
           +W DACE S QELKK+LVT  +LT+ TPG+EF+IYCDASHQGLGCVLMQKGKVVAYASRQ
Sbjct: 382 KWADACERSSQELKKKLVTTLVLTLPTPGVEFDIYCDASHQGLGCVLMQKGKVVAYASRQ 441

Query: 125 LKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR 180
           LKKHECNYPTHDLELAA+VLALKLW HYLYGERCHIFT+HKSLKYIFDQKE+NLR
Sbjct: 442 LKKHECNYPTHDLELAAVVLALKLWWHYLYGERCHIFTDHKSLKYIFDQKELNLR 496

[Close]

BLAST of Cmc07g0193221 vs. NCBI nr
Match: KAA0045302.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 316.2 bits (809), Expect = 1.8e-82
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 5   VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKF 64
           VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKF
Sbjct: 126 VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKF 185

Query: 65  EWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASRQ 124
           EWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASRQ
Sbjct: 186 EWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASRQ 245

Query: 125 LKKHECNYPTHDLELAALVLALKLWRHYLY 155
           LKKHECNYPTHDLELAALVLALKLWRHYLY
Sbjct: 246 LKKHECNYPTHDLELAALVLALKLWRHYLY 275

[Close]

BLAST of Cmc07g0193221 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.4e-28
Identity = 66/173 (38.15%), Postives = 103/173 (59.54%), Query Frame = 0


Query: 6   EGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFE 65
           +GI  +P+K EA  K+  PT   +I++FLGL GYYR+F+  F+ +A P+T   +KN+K +
Sbjct: 418 DGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKID 477

Query: 66  WID-ACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASRQ 125
             +   + +F++LK  +    IL +     +F +  DAS   LG VL Q G  ++Y SR 
Sbjct: 478 TTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRT 537

Query: 126 LKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEIN 178
           L +HE NY T + EL A+V A K +RHYL G    I ++H+ L +++  K+ N
Sbjct: 538 LNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPN 590

[Close]

BLAST of Cmc07g0193221 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.5e-25
Identity = 64/175 (36.57%), Postives = 102/175 (58.29%), Query Frame = 0


Query: 6   EGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNV--- 65
           +GI  +P K +A   +  PT   +IR+FLGL GYYR+F+  ++ +A P+T+  +K     
Sbjct: 417 DGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKID 476

Query: 66  --KFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAY 125
             K E+I+A    F++LK  ++   IL +     +F +  DAS+  LG VL Q G  +++
Sbjct: 477 TQKLEYIEA----FEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISF 536

Query: 126 ASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKE 176
            SR L  HE NY   + EL A+V A K +RHYL G +  I ++H+ L+++ + KE
Sbjct: 537 ISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKE 587

[Close]

BLAST of Cmc07g0193221 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.9e-25
Identity = 65/190 (34.21%), Postives = 109/190 (57.37%), Query Frame = 0


Query: 4   SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTR---- 63
           S +G  +DP+K +A  ++  P  V K+RSFLGLA YYR F++ F+ +A P+T++ +    
Sbjct: 391 SKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENG 450

Query: 64  -------KNVKFEWIDACEWSFQELKKRLVTASILTILTPGIE--FEIYCDASHQGLGCV 123
                  K +  E+ +    +FQ L+  L +  ++ +  P  +  F++  DAS  G+G V
Sbjct: 451 SVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVI-LKYPDFKKPFDLTTDASASGIGAV 510

Query: 124 LMQKGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGER-CHIFTNHKSLKY 180
           L Q+G+ +   SR LK+ E NY T++ EL A+V AL   +++LYG R  +IFT+H+ L +
Sbjct: 511 LSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTF 570

[Close]

BLAST of Cmc07g0193221 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.3e-24
Identity = 63/170 (37.06%), Postives = 90/170 (52.94%), Query Frame = 0


Query: 6   EGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKFE 65
           +GI  D +K +    +  P      R F+    YYRRF++ F+  +  +T L +KNV FE
Sbjct: 526 KGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFE 585

Query: 66  WIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGK----VVAYA 125
           W D C+ +F  LK +L+  ++L       EF I  DAS Q  G VL Q        VAYA
Sbjct: 586 WTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYA 645

Query: 126 SRQLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIF 172
           SR   K E N  T + ELAA+  A+  +R Y+YG+   + T+H+ L Y+F
Sbjct: 646 SRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLF 695

[Close]

BLAST of Cmc07g0193221 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-23
Identity = 65/192 (33.85%), Postives = 101/192 (52.60%), Query Frame = 0


Query: 4   SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTR---- 63
           + +GI ADP+K  A  +   PTSV +++ FLG+  YYR+F++ ++K+A PLTNLTR    
Sbjct: 332 TADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYA 391

Query: 64  -------KNVKFEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLM 123
                    V     +    SF +LK  L ++ IL        F +  DAS+  +G VL 
Sbjct: 392 NIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLS 451

Query: 124 Q----KGKVVAYASRQLKKHECNYPTHDLELAALVLALKLWRHYLYGE-RCHIFTNHKSL 180
           Q    + + +AY SR L K E NY T + E+ A++ +L   R YLYG     ++T+H+ L
Sbjct: 452 QDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPL 511

[Close]

BLAST of Cmc07g0193221 vs. ExPASy TrEMBL
Match: A0A5D3DHF7 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00600 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.4e-88
Identity = 156/175 (89.14%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 5   VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKF 64
           +EGIC DPQKTEA DKW+RP SVT+IRSFLGLAGYYRRF+EGFSKLALPLTNLTRKNVKF
Sbjct: 1   MEGICVDPQKTEAVDKWKRPISVTEIRSFLGLAGYYRRFMEGFSKLALPLTNLTRKNVKF 60

Query: 65  EWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASRQ 124
           EW DACE SFQELKKRLVTA +LT+  PG+EFEIYCDASHQGLGCVLMQKGKVVAYASRQ
Sbjct: 61  EWTDACERSFQELKKRLVTAPVLTLPIPGVEFEIYCDASHQGLGCVLMQKGKVVAYASRQ 120

Query: 125 LKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR 180
           LKKHECNYPTHDLELAA+VLALKLWRHYLYGERCHIF +HKSLKYIFDQKE+NLR
Sbjct: 121 LKKHECNYPTHDLELAAVVLALKLWRHYLYGERCHIFIDHKSLKYIFDQKELNLR 175

[Close]

BLAST of Cmc07g0193221 vs. ExPASy TrEMBL
Match: A0A5A7T0V4 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00160 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.3e-86
Identity = 152/176 (86.36%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 4   SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVK 63
           S+EGIC DP+K EA DK ERPTS+T+I+SFLGL+ YYR+ VEGFSKLALPLTNLTRKNVK
Sbjct: 425 SMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYRQLVEGFSKLALPLTNLTRKNVK 484

Query: 64  FEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASR 123
           FEW DAC WSFQELKKRLVT  +LT+LTPGIEFEIY DASHQGLGCVLMQKGKVVAYASR
Sbjct: 485 FEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFDASHQGLGCVLMQKGKVVAYASR 544

Query: 124 QLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR 180
           QLKKHECNYPTHDLELA +VLALKLWRHYLYGERCHIFT+HKSLKYIFDQKE+NLR
Sbjct: 545 QLKKHECNYPTHDLELATVVLALKLWRHYLYGERCHIFTDHKSLKYIFDQKELNLR 600

[Close]

BLAST of Cmc07g0193221 vs. ExPASy TrEMBL
Match: A0A5D3CQ91 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001650 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.3e-86
Identity = 152/176 (86.36%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 4   SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVK 63
           S+EGIC DP+K EA DK ERPTS+T+I+SFLGL+ YYR+ VEGFSKLALPLTNLTRKNVK
Sbjct: 356 SMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYRQLVEGFSKLALPLTNLTRKNVK 415

Query: 64  FEWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASR 123
           FEW DAC WSFQELKKRLVT  +LT+LTPGIEFEIY DASHQGLGCVLMQKGKVVAYASR
Sbjct: 416 FEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFDASHQGLGCVLMQKGKVVAYASR 475

Query: 124 QLKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR 180
           QLKKHECNYPTHDLELA +VLALKLWRHYLYGERCHIFT+HKSLKYIFDQKE+NLR
Sbjct: 476 QLKKHECNYPTHDLELATVVLALKLWRHYLYGERCHIFTDHKSLKYIFDQKELNLR 531

[Close]

BLAST of Cmc07g0193221 vs. ExPASy TrEMBL
Match: A0A5A7U0P3 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00360 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.9e-84
Identity = 151/175 (86.29%), Postives = 162/175 (92.57%), Query Frame = 0


Query: 5   VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKF 64
           VE I   PQKTEA DKWERPTSVT+IRSFLGLAGYYRRFVEGFSKL+L LTNLTRKNVKF
Sbjct: 322 VEDIYVGPQKTEAIDKWERPTSVTEIRSFLGLAGYYRRFVEGFSKLSLALTNLTRKNVKF 381

Query: 65  EWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASRQ 124
           +W DACE S QELKK+LVT  +LT+ TPG+EF+IYCDASHQGLGCVLMQKGKVVAYASRQ
Sbjct: 382 KWADACERSSQELKKKLVTTLVLTLPTPGVEFDIYCDASHQGLGCVLMQKGKVVAYASRQ 441

Query: 125 LKKHECNYPTHDLELAALVLALKLWRHYLYGERCHIFTNHKSLKYIFDQKEINLR 180
           LKKHECNYPTHDLELAA+VLALKLW HYLYGERCHIFT+HKSLKYIFDQKE+NLR
Sbjct: 442 LKKHECNYPTHDLELAAVVLALKLWWHYLYGERCHIFTDHKSLKYIFDQKELNLR 496

[Close]

BLAST of Cmc07g0193221 vs. ExPASy TrEMBL
Match: A0A5A7TPK6 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00660 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 8.6e-83
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 5   VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKF 64
           VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKF
Sbjct: 126 VEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVKF 185

Query: 65  EWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASRQ 124
           EWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASRQ
Sbjct: 186 EWIDACEWSFQELKKRLVTASILTILTPGIEFEIYCDASHQGLGCVLMQKGKVVAYASRQ 245

Query: 125 LKKHECNYPTHDLELAALVLALKLWRHYLY 155
           LKKHECNYPTHDLELAALVLALKLWRHYLY
Sbjct: 246 LKKHECNYPTHDLELAALVLALKLWRHYLY 275

[Close]

BLAST of Cmc07g0193221 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-15
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 4   SVEGICADPQKTEAEDKWERPTSVTKIRSFLGLAGYYRRFVEGFSKLALPLTNLTRKNVK 63
           S EG+ ADP K EA   W  P + T++R FLGL GYYRRFV+ + K+  PLT L +KN  
Sbjct: 40  SGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-S 99

Query: 64  FEWIDACEWSFQELKKRLVTASILTI 90
            +W +    +F+ LK  + T  +L +
Sbjct: 100 LKWTEMAALAFKALKGAVTTLPVLAL 124

The following BLAST results are available for this feature:

BLAST of Cmc07g0193221 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042458.1	2.8e-88	89.14	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK...	[more]
TYK13961.1	1.3e-85	86.36	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0037114.1	1.3e-85	86.36	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0047049.1	1.2e-83	86.29	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0045302.1	1.8e-82	100.00	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0193221 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	3.4e-28	38.15	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	3.5e-25	36.57	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P10401	7.9e-25	34.21	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P10394	2.3e-24	37.06	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
Q8I7P9	1.1e-23	33.85	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of Cmc07g0193221 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DHF7	1.4e-88	89.14	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7T0V4	6.3e-86	86.36	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3CQ91	6.3e-86	86.36	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7U0P3	5.9e-84	86.29	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TPK6	8.6e-83	100.00	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of Cmc07g0193221 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.5e-15	43.02	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 66..160 e-value: 1.2E-29 score: 102.3
None	No IPR available	GENE3D	3.10.20.370		coord: 99..161 e-value: 3.1E-9 score: 38.7
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 16..173
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 16..173
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 13..98 e-value: 1.5E-26 score: 94.3
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 4..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0193221.1	Cmc07g0193221.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding