Cmc07g0193111 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0193111
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 14420701 .. 14421495 (+)
RNA-Seq Expression	Cmc07g0193111
Synteny	Cmc07g0193111

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTACAGAATGGCCCCCGCAGAACTGAAAGAACTGAAGGTACAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTCGTTAAAAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAATTTAATAAGGTAACCGTAAAGAACAGATATCCTTTGCCCAGGATTGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGAGGATGTACCGAAGACAGCATTTCGTTCCAGGTATGGACACTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATCGACGATATCTTGATATACTCCAAGACGGAGGCCGAACAGGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCTTTTCTGGGTCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGCAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTTAG

mRNA sequence

ATGGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTACAGAATGGCCCCCGCAGAACTGAAAGAACTGAAGGTACAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTCGTTAAAAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAATTTAATAAGGTAACCGTAAAGAACAGATATCCTTTGCCCAGGATTGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGAGGATGTACCGAAGACAGCATTTCGTTCCAGGTATGGACACTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATCGACGATATCTTGATATACTCCAAGACGGAGGCCGAACAGGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCTTTTCTGGGTCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGCAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTTAG

Coding sequence (CDS)

ATGGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTACAGAATGGCCCCCGCAGAACTGAAAGAACTGAAGGTACAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTCGTTAAAAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAATTTAATAAGGTAACCGTAAAGAACAGATATCCTTTGCCCAGGATTGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGAGGATGTACCGAAGACAGCATTTCGTTCCAGGTATGGACACTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATCGACGATATCTTGATATACTCCAAGACGGAGGCCGAACAGGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCTTTTCTGGGTCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGCAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTTAG

Protein sequence

MELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYREFNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLT

Homology

[Close]

BLAST of Cmc07g0193111 vs. NCBI nr
Match: KAA0066266.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 528.1 bits (1359), Expect = 4.4e-146
Identity = 261/264 (98.86%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1   MELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 60
           +ELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR
Sbjct: 138 IELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 197

Query: 61  LCIDYREFNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 120
           LCIDYRE NKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR
Sbjct: 198 LCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 257

Query: 121 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLR 180
           SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAE EEHLR
Sbjct: 258 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR 317

Query: 181 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 240
           MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR
Sbjct: 318 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 377

Query: 241 SFLGLAGYYRRFVENFSRIATPLT 265
           SFLGLAGYYRRFVENFSRIATPLT
Sbjct: 378 SFLGLAGYYRRFVENFSRIATPLT 401

[Close]

BLAST of Cmc07g0193111 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 528.1 bits (1359), Expect = 4.4e-146
Identity = 261/264 (98.86%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1   MELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 60
           +ELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR
Sbjct: 564 IELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 623

Query: 61  LCIDYREFNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 120
           LCIDYRE NKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR
Sbjct: 624 LCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 683

Query: 121 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLR 180
           SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAE EEHLR
Sbjct: 684 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR 743

Query: 181 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 240
           MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR
Sbjct: 744 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 803

Query: 241 SFLGLAGYYRRFVENFSRIATPLT 265
           SFLGLAGYYRRFVENFSRIATPLT
Sbjct: 804 SFLGLAGYYRRFVENFSRIATPLT 827

[Close]

BLAST of Cmc07g0193111 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 528.1 bits (1359), Expect = 4.4e-146
Identity = 261/264 (98.86%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1    MELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 60
            +ELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR
Sbjct: 818  IELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 877

Query: 61   LCIDYREFNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 120
            LCIDYRE NKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR
Sbjct: 878  LCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 937

Query: 121  SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLR 180
            SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAE EEHLR
Sbjct: 938  SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR 997

Query: 181  MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 240
            MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR
Sbjct: 998  MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 1057

Query: 241  SFLGLAGYYRRFVENFSRIATPLT 265
            SFLGLAGYYRRFVENFSRIATPLT
Sbjct: 1058 SFLGLAGYYRRFVENFSRIATPLT 1081

[Close]

BLAST of Cmc07g0193111 vs. NCBI nr
Match: KAA0062245.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 527.7 bits (1358), Expect = 5.7e-146
Identity = 260/264 (98.48%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1   MELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 60
           +ELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR
Sbjct: 664 IELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 723

Query: 61  LCIDYREFNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 120
           LCIDYRE NKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR
Sbjct: 724 LCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 783

Query: 121 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLR 180
           SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAE EEHLR
Sbjct: 784 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR 843

Query: 181 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 240
           MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPST+SEVR
Sbjct: 844 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTISEVR 903

Query: 241 SFLGLAGYYRRFVENFSRIATPLT 265
           SFLGLAGYYRRFVENFSRIATPLT
Sbjct: 904 SFLGLAGYYRRFVENFSRIATPLT 927

[Close]

BLAST of Cmc07g0193111 vs. NCBI nr
Match: KAA0037291.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 526.6 bits (1355), Expect = 1.3e-145
Identity = 260/264 (98.48%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1   MELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 60
           +ELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR
Sbjct: 731 IELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 790

Query: 61  LCIDYREFNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 120
           LCIDYRE NKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR
Sbjct: 791 LCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 850

Query: 121 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLR 180
           SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAE EEHLR
Sbjct: 851 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR 910

Query: 181 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 240
           MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKI+AVTGWTRPSTVSEVR
Sbjct: 911 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIKAVTGWTRPSTVSEVR 970

Query: 241 SFLGLAGYYRRFVENFSRIATPLT 265
           SFLGLAGYYRRFVENFSRIATPLT
Sbjct: 971 SFLGLAGYYRRFVENFSRIATPLT 994

[Close]

BLAST of Cmc07g0193111 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-56
Identity = 103/261 (39.46%), Postives = 163/261 (62.45%), Query Frame = 0


Query: 9   PISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCI 68
           PI    Y +A     E++ Q+QE+L++G IR S SP+ +P   V KK         R+ I
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265

Query: 69  DYREFNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRY 128
           DYR+ N++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+ + +E + KTAF ++ 
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325

Query: 129 GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLRMVL 188
           GHYE++ M FGL NAPA F   MN + R  L+   +V++DDI+I+S +  E    +++V 
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385

Query: 189 QTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFL 248
             L D  L  +  KCEF  K+ +FLGH+V+  G+  +P K++A+  +  P+   E+R+FL
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFL 445

Query: 249 GLAGYYRRFVENFSRIATPLT 265
           GL GYYR+F+ N++ IA P+T
Sbjct: 446 GLTGYYRKFIPNYADIAKPMT 466

[Close]

BLAST of Cmc07g0193111 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 217.6 bits (553), Expect = 1.7e-55
Identity = 109/263 (41.44%), Postives = 162/263 (61.60%), Query Frame = 0


Query: 1   MELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 60
           +E++PG       PY +     +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ R
Sbjct: 588 IEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFR 647

Query: 61  LCIDYREFNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 120
           LC+DYR  NK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ ++ +D  KTAF 
Sbjct: 648 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 707

Query: 121 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLR 180
           +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  E  +HL 
Sbjct: 708 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 767

Query: 181 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 240
            VL+ L++  L  K  KC+F  ++  FLG+ +    ++    K  A+  +  P TV + +
Sbjct: 768 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQ 827

Query: 241 SFLGLAGYYRRFVENFSRIATPL 264
            FLG+  YYRRF+ N S+IA P+
Sbjct: 828 RFLGMINYYRRFIPNCSKIAQPI 848

[Close]

BLAST of Cmc07g0193111 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 217.6 bits (553), Expect = 1.7e-55
Identity = 109/263 (41.44%), Postives = 162/263 (61.60%), Query Frame = 0


Query: 1   MELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 60
           +E++PG       PY +     +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ R
Sbjct: 614 IEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFR 673

Query: 61  LCIDYREFNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 120
           LC+DYR  NK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ ++ +D  KTAF 
Sbjct: 674 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 733

Query: 121 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLR 180
           +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  E  +HL 
Sbjct: 734 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 793

Query: 181 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 240
            VL+ L++  L  K  KC+F  ++  FLG+ +    ++    K  A+  +  P TV + +
Sbjct: 794 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQ 853

Query: 241 SFLGLAGYYRRFVENFSRIATPL 264
            FLG+  YYRRF+ N S+IA P+
Sbjct: 854 RFLGMINYYRRFIPNCSKIAQPI 874

[Close]

BLAST of Cmc07g0193111 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.7e-55
Identity = 103/255 (40.39%), Postives = 165/255 (64.71%), Query Frame = 0


Query: 15  YRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYREFN 74
           Y    A  +E++ Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ IDYR+ N
Sbjct: 213 YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLN 272

Query: 75  KVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFI 134
           ++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +  E V KTAF +++GHYE++
Sbjct: 273 EITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYL 332

Query: 135 VMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLRMVLQTLRDN 194
            M FGL NAPA F   MN + R  L+   +V++DDI+++S +  E  + L +V + L   
Sbjct: 333 RMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKA 392

Query: 195 KLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYY 254
            L  +  KCEF  ++ +FLGHV++  G+  +P KIEA+  +  P+   E+++FLGL GYY
Sbjct: 393 NLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYY 452

Query: 255 RRFVENFSRIATPLT 265
           R+F+ NF+ IA P+T
Sbjct: 453 RKFIPNFADIAKPMT 467

[Close]

BLAST of Cmc07g0193111 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.5e-51
Identity = 94/246 (38.21%), Postives = 154/246 (62.60%), Query Frame = 0


Query: 24  ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKK-----DGSMRLCIDYREFNKVTVKNRYP 83
           E++ Q+ ELL  G IRPS SP+ +P+  V KK     +   R+ +D++  N VT+ + YP
Sbjct: 138 EVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYP 197

Query: 84  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNA 143
           +P I+     L  A  F+ +DL SG+HQ+ +K+ D+PKTAF +  G YEF+ + FGL NA
Sbjct: 198 IPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNA 257

Query: 144 PAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLRMVLQTLRDNKLYAKFSKC 203
           PA+F  +++ + RE +     V+IDDI+++S+      ++LR+VL +L    L     K 
Sbjct: 258 PAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKS 317

Query: 204 EFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR 263
            F   QV FLG++V+  G+  DP K+ A++    P++V E++ FLG+  YYR+F++++++
Sbjct: 318 HFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAK 377

Query: 264 IATPLT 265
           +A PLT
Sbjct: 378 VAKPLT 383

[Close]

BLAST of Cmc07g0193111 vs. ExPASy TrEMBL
Match: A0A5A7VIT9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G003090 PE=4 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 2.1e-146
Identity = 261/264 (98.86%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1   MELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 60
           +ELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR
Sbjct: 138 IELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 197

Query: 61  LCIDYREFNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 120
           LCIDYRE NKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR
Sbjct: 198 LCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 257

Query: 121 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLR 180
           SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAE EEHLR
Sbjct: 258 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR 317

Query: 181 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 240
           MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR
Sbjct: 318 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 377

Query: 241 SFLGLAGYYRRFVENFSRIATPLT 265
           SFLGLAGYYRRFVENFSRIATPLT
Sbjct: 378 SFLGLAGYYRRFVENFSRIATPLT 401

[Close]

BLAST of Cmc07g0193111 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 2.1e-146
Identity = 261/264 (98.86%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1    MELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 60
            +ELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR
Sbjct: 818  IELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 877

Query: 61   LCIDYREFNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 120
            LCIDYRE NKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR
Sbjct: 878  LCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 937

Query: 121  SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLR 180
            SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAE EEHLR
Sbjct: 938  SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR 997

Query: 181  MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 240
            MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR
Sbjct: 998  MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 1057

Query: 241  SFLGLAGYYRRFVENFSRIATPLT 265
            SFLGLAGYYRRFVENFSRIATPLT
Sbjct: 1058 SFLGLAGYYRRFVENFSRIATPLT 1081

[Close]

BLAST of Cmc07g0193111 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 2.1e-146
Identity = 261/264 (98.86%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1   MELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 60
           +ELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR
Sbjct: 564 IELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 623

Query: 61  LCIDYREFNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 120
           LCIDYRE NKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR
Sbjct: 624 LCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 683

Query: 121 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLR 180
           SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAE EEHLR
Sbjct: 684 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR 743

Query: 181 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 240
           MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR
Sbjct: 744 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 803

Query: 241 SFLGLAGYYRRFVENFSRIATPLT 265
           SFLGLAGYYRRFVENFSRIATPLT
Sbjct: 804 SFLGLAGYYRRFVENFSRIATPLT 827

[Close]

BLAST of Cmc07g0193111 vs. ExPASy TrEMBL
Match: A0A5A7V8L8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00080 PE=4 SV=1)

HSP 1 Score: 527.7 bits (1358), Expect = 2.8e-146
Identity = 260/264 (98.48%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1   MELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 60
           +ELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR
Sbjct: 664 IELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 723

Query: 61  LCIDYREFNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 120
           LCIDYRE NKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR
Sbjct: 724 LCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 783

Query: 121 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLR 180
           SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAE EEHLR
Sbjct: 784 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR 843

Query: 181 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 240
           MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPST+SEVR
Sbjct: 844 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTISEVR 903

Query: 241 SFLGLAGYYRRFVENFSRIATPLT 265
           SFLGLAGYYRRFVENFSRIATPLT
Sbjct: 904 SFLGLAGYYRRFVENFSRIATPLT 927

[Close]

BLAST of Cmc07g0193111 vs. ExPASy TrEMBL
Match: A0A5A7T6R9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3G00010 PE=4 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 6.2e-146
Identity = 260/264 (98.48%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1   MELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 60
           +ELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR
Sbjct: 731 IELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 790

Query: 61  LCIDYREFNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 120
           LCIDYRE NKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR
Sbjct: 791 LCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFR 850

Query: 121 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEQEEHLR 180
           SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAE EEHLR
Sbjct: 851 SRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR 910

Query: 181 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVR 240
           MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKI+AVTGWTRPSTVSEVR
Sbjct: 911 MVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIKAVTGWTRPSTVSEVR 970

Query: 241 SFLGLAGYYRRFVENFSRIATPLT 265
           SFLGLAGYYRRFVENFSRIATPLT
Sbjct: 971 SFLGLAGYYRRFVENFSRIATPLT 994

[Close]

BLAST of Cmc07g0193111 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-21
Identity = 46/89 (51.69%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 178 HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTGWTRPST 237
           HL MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+ GW  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 238 VSEVRSFLGLAGYYRRFVENFSRIATPLT 265
            +E+R FLGL GYYRRFV+N+ +I  PLT
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLT 91

The following BLAST results are available for this feature:

BLAST of Cmc07g0193111 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066266.1	4.4e-146	98.86	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	4.4e-146	98.86	pol protein [Cucumis melo var. makuwa]	[more]
TYK01613.1	4.4e-146	98.86	pol protein [Cucumis melo var. makuwa]	[more]
KAA0062245.1	5.7e-146	98.48	pol protein [Cucumis melo var. makuwa]	[more]
KAA0037291.1	1.3e-145	98.48	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0193111 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.1e-56	39.46	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q99315	1.7e-55	41.44	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.7e-55	41.44	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P04323	3.7e-55	40.39	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	2.5e-51	38.21	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of Cmc07g0193111 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIT9	2.1e-146	98.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5D3BPI1	2.1e-146	98.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7U330	2.1e-146	98.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7V8L8	2.8e-146	98.48	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00080 PE...	[more]
A0A5A7T6R9	6.2e-146	98.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3G...	[more]

BLAST of Cmc07g0193111 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.7e-21	51.69	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..137 e-value: 1.8E-92 score: 310.5
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 9..264
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 9..264
None	No IPR available	CDD	cd01647	RT_LTR	coord: 36..212 e-value: 6.02921E-98 score: 282.562
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 52..211 e-value: 2.5E-28 score: 99.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 33..212 score: 11.233002
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 77..212 e-value: 1.8E-92 score: 310.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 222..264 e-value: 2.1E-15 score: 58.5
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0193111.1	Cmc07g0193111.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding