Cmc07g0193001 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0193001
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 14245731 .. 14246597 (+)
RNA-Seq Expression	Cmc07g0193001
Synteny	Cmc07g0193001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGATTTGGGAGAGGCACAGTTTTCTCTGGGTATTCAGATCTTTAGAGATTGTAAGAACAAAACGCTAGCTTTGTCTCAAGCATTGTATATTGACAAGATAGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGGCTTACTACCTTTCAGGCATGGAGTTACTTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAGAGGTTAAGGAAATGAGACATATCCCTTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTATTAGACCTGACATCTTTTATGCGGTGGGGATAGTCAGTAGATATCAATCTAATCCAGGATTAGCTCATTGGACTGTCGTTAAAACTATCCTCAAGTATCTTAGGAGAACGAGGGACTACATGCTTGTGTATGGTTCTAAGAATTTGATTCTTACAGGATACACAGACTATGATTTTCAGACTGATAGCGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAATGGAGGAGCTGTAGTTTGGGGAAGTATCAAGCAAGGATGTATTGCTGACTCCACCATGGAGGCAGAGTAAGTTGCAGCTTATGAAGCTGCCAAAGAGGCTGTTTGGCTTAGAAAATTCTTGACTGATTTGGAAGTAGTTCCAAACATGTGAAAGCCAATCACTCTTTACTGTGATAACAGTGGGGCTGTGGCTAATTCTAGGGAGCCCAGAAGCCACAAGCGTGGAAAGCATATTGAACACAAGTATCACTTGATTCGAGAGATAGTGCATCGAGAGGACGTGATCGTCACACAGATAGCTTCGACACACAATGTTACTGATCCGTTTACAAAGCCCCTACGCCTAAGGTGTTTGAGGGTCACTTAG

mRNA sequence

ATGAAAGATTTGGGAGAGGCACAGTTTTCTCTGGGTATTCAGATCTTTAGAGATTGTAAGAACAAAACGCTAGCTTTGTCTCAAGCATTGTATATTGACAAGATAGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGGCTTACTACCTTTCAGGCATGGAGTTACTTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAGAGGTTAAGGAAATGAGACATATCCCTTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTATTAGACCTGACATCTTTTATGCGGTGGGGATAGTCAGTAGATATCAATCTAATCCAGGATTAGCTCATTGGACTGTCGTTAAAACTATCCTCAAGTATCTTAGGAGAACGAGGGACTACATGCTTGTGTATGGTTCTAAGAATTTGATTCTTACAGGATACACAGACTATGATTTTCAGACTGATAGCGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAATGGAGGAGCTGTAGTTTGGGGAAGTATCAAGCAAGGATGTATTGCTGACTCCACCATGGAGGCAGATGGGGCTGTGGCTAATTCTAGGGAGCCCAGAAGCCACAAGCGTGGAAAGCATATTGAACACAAGTATCACTTGATTCGAGAGATAGTGCATCGAGAGGACGTGATCGTCACACAGATAGCTTCGACACACAATGTTACTGATCCGTTTACAAAGCCCCTACGCCTAAGGTGTTTGAGGGTCACTTAG

Coding sequence (CDS)

ATGAAAGATTTGGGAGAGGCACAGTTTTCTCTGGGTATTCAGATCTTTAGAGATTGTAAGAACAAAACGCTAGCTTTGTCTCAAGCATTGTATATTGACAAGATAGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGGCTTACTACCTTTCAGGCATGGAGTTACTTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAGAGGTTAAGGAAATGAGACATATCCCTTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTATTAGACCTGACATCTTTTATGCGGTGGGGATAGTCAGTAGATATCAATCTAATCCAGGATTAGCTCATTGGACTGTCGTTAAAACTATCCTCAAGTATCTTAGGAGAACGAGGGACTACATGCTTGTGTATGGTTCTAAGAATTTGATTCTTACAGGATACACAGACTATGATTTTCAGACTGATAGCGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAATGGAGGAGCTGTAGTTTGGGGAAGTATCAAGCAAGGATGTATTGCTGACTCCACCATGGAGGCAGATGGGGCTGTGGCTAATTCTAGGGAGCCCAGAAGCCACAAGCGTGGAAAGCATATTGAACACAAGTATCACTTGATTCGAGAGATAGTGCATCGAGAGGACGTGATCGTCACACAGATAGCTTCGACACACAATGTTACTGATCCGTTTACAAAGCCCCTACGCCTAAGGTGTTTGAGGGTCACTTAG

Protein sequence

MKDLGEAQFSLGIQIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQEVKEMRHIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTILKYLRRTRDYMLVYGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGCIADSTMEADGAVANSREPRSHKRGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPLRLRCLRVT

Homology

[Close]

BLAST of Cmc07g0193001 vs. NCBI nr
Match: KAA0045330.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 474.9 bits (1221), Expect = 4.2e-130
Identity = 235/237 (99.16%), Postives = 236/237 (99.58%), Query Frame = 0


Query: 14  QIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQEVKEMR 73
           +IFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQEVKEMR
Sbjct: 598 KIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQEVKEMR 657

Query: 74  HIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTILKYLRRTRDYMLV 133
           HIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTILKYLRRTRDYMLV
Sbjct: 658 HIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTILKYLRRTRDYMLV 717

Query: 134 YGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGCIADSTMEADGAVA 193
           YGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGCIADSTMEADGAVA
Sbjct: 718 YGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGCIADSTMEADGAVA 777

Query: 194 NSREPRSHKRGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPLRLRCLRVT 251
           NSREPRSHKRGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPLRLRCLR T
Sbjct: 778 NSREPRSHKRGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPLRLRCLRPT 834

[Close]

BLAST of Cmc07g0193001 vs. NCBI nr
Match: TYJ96910.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 458.8 bits (1179), Expect = 3.1e-125
Identity = 228/237 (96.20%), Postives = 231/237 (97.47%), Query Frame = 0


Query: 14  QIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQEVKEMR 73
           +IFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQEVKEMR
Sbjct: 686 KIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQEVKEMR 745

Query: 74  HIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTILKYLRRTRDYMLV 133
           HIPYASAVGSL+YAMLCIRPDI YAVGIVSRYQSNPGLAHWT VKTILKYLRRTRDYMLV
Sbjct: 746 HIPYASAVGSLIYAMLCIRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYMLV 805

Query: 134 YGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGCIADSTMEADGAVA 193
           YGSKNLILTGYT+YDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGCIADSTMEADGAVA
Sbjct: 806 YGSKNLILTGYTNYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGCIADSTMEADGAVA 865

Query: 194 NSREPRSHKRGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPLRLRCLRVT 251
           NSREPRSHKRGKHIE KYHLIREIVHR DVIVTQIA THNVTDPFTKPLRLRCLR T
Sbjct: 866 NSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIALTHNVTDPFTKPLRLRCLRPT 922

[Close]

BLAST of Cmc07g0193001 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 426.8 bits (1096), Expect = 1.3e-115
Identity = 224/280 (80.00%), Postives = 228/280 (81.43%), Query Frame = 0


Query: 1    MKDLGEAQFSLGIQIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQF LGIQIFRD KNK LALSQA YIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 828  MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 887

Query: 61   QCPKTPQEVKEMRHIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTI 120
            QCPKTPQ+V+EMRHIPYASAVGSLMYAMLC RPDI YAVGIVSRYQSNPGLAHWT VKTI
Sbjct: 888  QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 947

Query: 121  LKYLRRTRDYMLVYGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGC 180
            LKYLRRTRDY LVYGSK+LILTGYTD DFQTD DSRKSTSGSVFTLNGGAVVW SIKQGC
Sbjct: 948  LKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGC 1007

Query: 181  IADSTMEAD--------------------------------------GAVANSREPRSHK 240
            IADSTMEA+                                      GAVANSREPRSHK
Sbjct: 1008 IADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHK 1067

Query: 241  RGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPL 243
            RGKHIE KYHLIREIVHR DVIVTQIASTHNV DPFTKPL
Sbjct: 1068 RGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTKPL 1107

[Close]

BLAST of Cmc07g0193001 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 426.8 bits (1096), Expect = 1.3e-115
Identity = 224/280 (80.00%), Postives = 228/280 (81.43%), Query Frame = 0


Query: 1    MKDLGEAQFSLGIQIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQF LGIQIFRD KNK LALSQA YIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 1042 MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 1101

Query: 61   QCPKTPQEVKEMRHIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTI 120
            QCPKTPQ+V+EMRHIPYASAVGSLMYAMLC RPDI YAVGIVSRYQSNPGLAHWT VKTI
Sbjct: 1102 QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 1161

Query: 121  LKYLRRTRDYMLVYGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGC 180
            LKYLRRTRDY LVYGSK+LILTGYTD DFQTD DSRKSTSGSVFTLNGGAVVW SIKQGC
Sbjct: 1162 LKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGC 1221

Query: 181  IADSTMEAD--------------------------------------GAVANSREPRSHK 240
            IADSTMEA+                                      GAVANSREPRSHK
Sbjct: 1222 IADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHK 1281

Query: 241  RGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPL 243
            RGKHIE KYHLIREIVHR DVIVTQIASTHNV DPFTKPL
Sbjct: 1282 RGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTKPL 1321

[Close]

BLAST of Cmc07g0193001 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 426.8 bits (1096), Expect = 1.3e-115
Identity = 224/280 (80.00%), Postives = 228/280 (81.43%), Query Frame = 0


Query: 1    MKDLGEAQFSLGIQIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQF LGIQIFRD KNK LALSQA YIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 1043 MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 1102

Query: 61   QCPKTPQEVKEMRHIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTI 120
            QCPKTPQ+V+EMRHIPYASAVGSLMYAMLC RPDI YAVGIVSRYQSNPGLAHWT VKTI
Sbjct: 1103 QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 1162

Query: 121  LKYLRRTRDYMLVYGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGC 180
            LKYLRRTRDY LVYGSK+LILTGYTD DFQTD DSRKSTSGSVFTLNGGAVVW SIKQGC
Sbjct: 1163 LKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGC 1222

Query: 181  IADSTMEAD--------------------------------------GAVANSREPRSHK 240
            IADSTMEA+                                      GAVANSREPRSHK
Sbjct: 1223 IADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHK 1282

Query: 241  RGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPL 243
            RGKHIE KYHLIREIVHR DVIVTQIASTHNV DPFTKPL
Sbjct: 1283 RGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTKPL 1322

[Close]

BLAST of Cmc07g0193001 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.0e-50
Identity = 114/275 (41.45%), Postives = 157/275 (57.09%), Query Frame = 0


Query: 1    MKDLGEAQFSLGIQIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLG AQ  LG++I R+  ++ L LSQ  YI++++ +++M+N+K    P    + LSK+
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   QCPKTPQEVKEMRHIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTI 120
             CP T +E   M  +PY+SAVGSLMYAM+C RPDI +AVG+VSR+  NPG  HW  VK I
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWI 1154

Query: 121  LKYLRRTRDYMLVYGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGC 180
            L+YLR T    L +G  + IL GYTD D   D D+RKS++G +FT +GGA+ W S  Q C
Sbjct: 1155 LRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKC 1214

Query: 181  IADSTMEAD-----------------------------------GAVANSREPRSHKRGK 240
            +A ST EA+                                    A+  S+    H R K
Sbjct: 1215 VALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTK 1274

[Close]

BLAST of Cmc07g0193001 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-26
Identity = 87/287 (30.31%), Postives = 132/287 (45.99%), Query Frame = 0


Query: 1    MKDLGEAQFSLGIQIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLP----FRHGVT 60
            M DL E +  +GI+I  + +   + LSQ+ Y+ KI+ K++M+N      P      + + 
Sbjct: 1114 MTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELL 1173

Query: 61   LSKEQCPKTPQEVKEMRHIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTV 120
             S E C           + P  S +G LMY MLC RPD+  AV I+SRY S      W  
Sbjct: 1174 NSDEDC-----------NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQN 1233

Query: 121  VKTILKYLRRTRDYMLVYGSKNLI----LTGYTDYDFQTDSDSRKSTSGSVFTL-NGGAV 180
            +K +L+YL+ T D  L++  KNL     + GY D D+      RKST+G +F + +   +
Sbjct: 1234 LKRVLRYLKGTIDMKLIF-KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLI 1293

Query: 181  VWGSIKQGCIADSTMEAD------------------------------------GAVANS 240
             W + +Q  +A S+ EA+                                    G ++ +
Sbjct: 1294 CWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIA 1353

Query: 241  REPRSHKRGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPL 243
              P  HKR KHI+ KYH  RE V    + +  I + + + D FTKPL
Sbjct: 1354 NNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPL 1386

[Close]

BLAST of Cmc07g0193001 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.7e-22
Identity = 53/117 (45.30%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 72  MRHIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTILKYLRRTRDYM 131
           M+++PY SAVG++MY M+  RPD+  AVG++S++ S+P   HW  +K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 132 LVYGSKNLI-LTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGCIADSTME 188
           L +       L GY+D D+  D +SR+STSG +F LNGG V W S KQ  +A S+ E
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTE 117

[Close]

BLAST of Cmc07g0193001 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.5e-16
Identity = 77/279 (27.60%), Postives = 113/279 (40.50%), Query Frame = 0


Query: 1    MKDLGEAQFSLGIQIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            +K+  +  + LGI+  R    + L LSQ  Y   ++ + +M  +K    P      L+  
Sbjct: 1160 VKEHEDLHYFLGIEAKR--VPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLH 1219

Query: 61   QCPKTPQEVKEMRHIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTI 120
               K P   +      Y   VGSL Y +   RPD+ YAV  +S+Y   P   HW  +K +
Sbjct: 1220 SGTKLPDPTE------YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRV 1279

Query: 121  LKYLRRTRDYMLVYGSKN-LILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQG 180
            L+YL  T D+ +     N L L  Y+D D+  D+D   ST+G +  L    + W S KQ 
Sbjct: 1280 LRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQK 1339

Query: 181  CIADSTMEAD------------------------------------GAVANSREPRSHKR 240
             +  S+ EA+                                    GA      P  H R
Sbjct: 1340 GVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSR 1399

Query: 241  GKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPL 243
             KHI   YH IR  V    + V  +++   + D  TKPL
Sbjct: 1400 MKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPL 1429

[Close]

BLAST of Cmc07g0193001 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.1e-14
Identity = 79/279 (28.32%), Postives = 110/279 (39.43%), Query Frame = 0


Query: 1    MKDLGEAQFSLGIQIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            +KD  E  + LGI+  R      L LSQ  YI  ++ + +M  +K    P      LS  
Sbjct: 1177 VKDHEELHYFLGIEAKR--VPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLY 1236

Query: 61   QCPKTPQEVKEMRHIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTI 120
               K     +      Y   VGSL Y +   RPDI YAV  +S++   P   H   +K I
Sbjct: 1237 SGTKLTDPTE------YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRI 1296

Query: 121  LKYLRRTRDYMLVYGSKN-LILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQG 180
            L+YL  T ++ +     N L L  Y+D D+  D D   ST+G +  L    + W S KQ 
Sbjct: 1297 LRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQK 1356

Query: 181  CIADSTMEAD------------------------------------GAVANSREPRSHKR 240
             +  S+ EA+                                    GA      P  H R
Sbjct: 1357 GVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSR 1416

Query: 241  GKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPL 243
             KHI   YH IR  V    + V  +++   + D  TKPL
Sbjct: 1417 MKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPL 1446

[Close]

BLAST of Cmc07g0193001 vs. ExPASy TrEMBL
Match: A0A5A7TQ86 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001030 PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 2.0e-130
Identity = 235/237 (99.16%), Postives = 236/237 (99.58%), Query Frame = 0


Query: 14  QIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQEVKEMR 73
           +IFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQEVKEMR
Sbjct: 598 KIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQEVKEMR 657

Query: 74  HIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTILKYLRRTRDYMLV 133
           HIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTILKYLRRTRDYMLV
Sbjct: 658 HIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTILKYLRRTRDYMLV 717

Query: 134 YGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGCIADSTMEADGAVA 193
           YGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGCIADSTMEADGAVA
Sbjct: 718 YGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGCIADSTMEADGAVA 777

Query: 194 NSREPRSHKRGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPLRLRCLRVT 251
           NSREPRSHKRGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPLRLRCLR T
Sbjct: 778 NSREPRSHKRGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPLRLRCLRPT 834

[Close]

BLAST of Cmc07g0193001 vs. ExPASy TrEMBL
Match: A0A5D3BAN6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00110 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 1.5e-125
Identity = 228/237 (96.20%), Postives = 231/237 (97.47%), Query Frame = 0


Query: 14  QIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQEVKEMR 73
           +IFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQEVKEMR
Sbjct: 686 KIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQEVKEMR 745

Query: 74  HIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTILKYLRRTRDYMLV 133
           HIPYASAVGSL+YAMLCIRPDI YAVGIVSRYQSNPGLAHWT VKTILKYLRRTRDYMLV
Sbjct: 746 HIPYASAVGSLIYAMLCIRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYMLV 805

Query: 134 YGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGCIADSTMEADGAVA 193
           YGSKNLILTGYT+YDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGCIADSTMEADGAVA
Sbjct: 806 YGSKNLILTGYTNYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGCIADSTMEADGAVA 865

Query: 194 NSREPRSHKRGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPLRLRCLRVT 251
           NSREPRSHKRGKHIE KYHLIREIVHR DVIVTQIA THNVTDPFTKPLRLRCLR T
Sbjct: 866 NSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIALTHNVTDPFTKPLRLRCLRPT 922

[Close]

BLAST of Cmc07g0193001 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 6.3e-116
Identity = 224/280 (80.00%), Postives = 228/280 (81.43%), Query Frame = 0


Query: 1    MKDLGEAQFSLGIQIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQF LGIQIFRD KNK LALSQA YIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 1043 MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 1102

Query: 61   QCPKTPQEVKEMRHIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTI 120
            QCPKTPQ+V+EMRHIPYASAVGSLMYAMLC RPDI YAVGIVSRYQSNPGLAHWT VKTI
Sbjct: 1103 QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 1162

Query: 121  LKYLRRTRDYMLVYGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGC 180
            LKYLRRTRDY LVYGSK+LILTGYTD DFQTD DSRKSTSGSVFTLNGGAVVW SIKQGC
Sbjct: 1163 LKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGC 1222

Query: 181  IADSTMEAD--------------------------------------GAVANSREPRSHK 240
            IADSTMEA+                                      GAVANSREPRSHK
Sbjct: 1223 IADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHK 1282

Query: 241  RGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPL 243
            RGKHIE KYHLIREIVHR DVIVTQIASTHNV DPFTKPL
Sbjct: 1283 RGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTKPL 1322

[Close]

BLAST of Cmc07g0193001 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 6.3e-116
Identity = 224/280 (80.00%), Postives = 228/280 (81.43%), Query Frame = 0


Query: 1    MKDLGEAQFSLGIQIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQF LGIQIFRD KNK LALSQA YIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 1043 MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 1102

Query: 61   QCPKTPQEVKEMRHIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTI 120
            QCPKTPQ+V+EMRHIPYASAVGSLMYAMLC RPDI YAVGIVSRYQSNPGLAHWT VKTI
Sbjct: 1103 QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 1162

Query: 121  LKYLRRTRDYMLVYGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGC 180
            LKYLRRTRDY LVYGSK+LILTGYTD DFQTD DSRKSTSGSVFTLNGGAVVW SIKQGC
Sbjct: 1163 LKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGC 1222

Query: 181  IADSTMEAD--------------------------------------GAVANSREPRSHK 240
            IADSTMEA+                                      GAVANSREPRSHK
Sbjct: 1223 IADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHK 1282

Query: 241  RGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPL 243
            RGKHIE KYHLIREIVHR DVIVTQIASTHNV DPFTKPL
Sbjct: 1283 RGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTKPL 1322

[Close]

BLAST of Cmc07g0193001 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 6.3e-116
Identity = 224/280 (80.00%), Postives = 228/280 (81.43%), Query Frame = 0


Query: 1    MKDLGEAQFSLGIQIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQF LGIQIFRD KNK LALSQA YIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 1043 MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 1102

Query: 61   QCPKTPQEVKEMRHIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTI 120
            QCPKTPQ+V+EMRHIPYASAVGSLMYAMLC RPDI YAVGIVSRYQSNPGLAHWT VKTI
Sbjct: 1103 QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 1162

Query: 121  LKYLRRTRDYMLVYGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQGC 180
            LKYLRRTRDYMLVYGSK+LILTGYTD DFQTD DSRKSTSGSVF LNGGAVVW SIKQGC
Sbjct: 1163 LKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFILNGGAVVWRSIKQGC 1222

Query: 181  IADSTMEAD--------------------------------------GAVANSREPRSHK 240
            IADSTMEA+                                      GAVANSREPRSHK
Sbjct: 1223 IADSTMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHK 1282

Query: 241  RGKHIEHKYHLIREIVHREDVIVTQIASTHNVTDPFTKPL 243
            RGKHIE KYHLIREIVHR DVIVTQIASTHNV DPFTKPL
Sbjct: 1283 RGKHIERKYHLIREIVHRGDVIVTQIASTHNVADPFTKPL 1322

[Close]

BLAST of Cmc07g0193001 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-12
Identity = 57/192 (29.69%), Postives = 96/192 (50.00%), Query Frame = 0


Query: 1   MKDLGEAQFSLGIQIFRDCKNKTLALSQALYIDKIVVKYSMQNSK--RGLLPFRHGVTLS 60
           MKDLG   + LGIQI        L LSQ  Y ++I+    M + K     LP +   ++S
Sbjct: 33  MKDLGPVHYFLGIQI--KTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVS 92

Query: 61  KEQCPKTPQEVKEMRHIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVK 120
             + P  P +        + S VG+L Y  L  RPDI YAV IV +    P LA + ++K
Sbjct: 93  TAKYP-DPSD--------FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLK 152

Query: 121 TILKYLRRTRDY-MLVYGSKNLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIK 180
            +L+Y++ T  + + ++ +  L +  + D D+   + +R+ST+G    L    + W + +
Sbjct: 153 RVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKR 212

Query: 181 QGCIADSTMEAD 190
           Q  ++ S+ E +
Sbjct: 213 QPTVSRSSTETE 212

[Close]

BLAST of Cmc07g0193001 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-12
Identity = 54/190 (28.42%), Postives = 92/190 (48.42%), Query Frame = 0


Query: 1   MKDLGEAQFSLGIQIFRDCKNKTLALSQALYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
           ++DLG  ++ LG++I R      + + Q  Y   ++ +  +   K   +P    VT S  
Sbjct: 310 LRDLGPLKYFLGLEIARSAAG--INICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAH 369

Query: 61  QCPKTPQEVKEMRHIPYASAVGSLMYAMLCIRPDIFYAVGIVSRYQSNPGLAHWTVVKTI 120
               +  +  + +   Y   +G LMY  +  R DI +AV  +S++   P LAH   V  I
Sbjct: 370 ----SGGDFVDAK--AYRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKI 429

Query: 121 LKYLRRTRDYMLVYGSK-NLILTGYTDYDFQTDSDSRKSTSGSVFTLNGGAVVWGSIKQG 180
           L Y++ T    L Y S+  + L  ++D  FQ+  D+R+ST+G    L    + W S KQ 
Sbjct: 430 LHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQ 489

Query: 181 CIADSTMEAD 190
            ++ S+ EA+
Sbjct: 490 VVSKSSAEAE 490

The following BLAST results are available for this feature:

BLAST of Cmc07g0193001 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045330.1	4.2e-130	99.16	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]	[more]
TYJ96910.1	3.1e-125	96.20	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ97618.1	1.3e-115	80.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.3e-115	80.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	1.3e-115	80.00	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0193001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.0e-50	41.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.4e-26	30.31	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	8.7e-22	45.30	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q9ZT94	5.5e-16	27.60	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.1e-14	28.32	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc07g0193001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQ86	2.0e-130	99.16	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5D3BAN6	1.5e-125	96.20	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G0011...	[more]
A0A5A7SMH8	6.3e-116	80.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	6.3e-116	80.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TWB9	6.3e-116	80.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Cmc07g0193001 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	1.3e-12	29.69	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	2.2e-12	28.42	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 69..163
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 69..163
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 142..242 e-value: 5.03389E-34 score: 117.954

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0193001.1	Cmc07g0193001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding