Cmc07g0192311 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0192311
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr07: 12952920 .. 12953690 (-)
RNA-Seq ExpressionCmc07g0192311
SyntenyCmc07g0192311
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATAGACTTTGGTCCTACTGCTTATATGACAGGCAATCCCAAATTATTTCTACAAATTTGTCATCTAAATCCATTACCAATGTTACCCTAGCAGACGAATCAAAATCTTCTATTATTGGATCAGGCATTGTCACCCCATCCCTTTCTCTGTCATCTGTCCTCCACTTACCTCAAGTGTCATTTAGCTTGCTCTCTATTAGTCAAATCACCACTGACCTTAATTGTTGTGTCTCATTCTATCCTAGCTATTGCTTGTTTCAAGATCTTGTAACAAAGAAGATTATTGGGAAAGGACATGAATCTAGAGGACTTTACACTTTTGATCACCCAATATCGACGTCAACGACTGTTGCTTGTTCTGGATTTTTTTCTCCTTTTGATGCCCATTGTCGTCTTCTTGGTCATCCATCCCTCTTACTTTTAAGAAATCTTTGTCATCAGTCTTATAACTTGTCTTCATTGAATTGTGACTCATGTCAGTTTGCCAAATTTCATCTTCTTAGCTCCAGTTCTAGAGTTGACAAACGGGAAAATTCTCCCTTTGAGTTAGTTCATTCTTATATTTGGGGTCCATGTCTAATTGTGTCCAAAGCTGGATTAAGATATTTTGTTACCTTTGTTCATGATCACTCTCGCATGACTAGGTTATATTTTACCAAAAATCATTCTGAGTTACTTTCTCATTTCAGCAATTTTCATGCTGAAATTCGAACACAACTTGGTGTATGGCTTAGAGCCTTGAGAAGTGACAATGTTAGTGAGTAA

mRNA sequence

ATGGATCATAGACTTTGGTCCTACTGCTTATATGACAGGCAATCCCAAATTATTTCTACAAATTTGTCATCTAAATCCATTACCAATGTTACCCTAGCAGACGAATCAAAATCTTCTATTATTGGATCAGGCATTGTCACCCCATCCCTTTCTCTGTCATCTGTCCTCCACTTACCTCAAGTGTCATTTAGCTTGCTCTCTATTAGTCAAATCACCACTGACCTTAATTGTTGTGTCTCATTCTATCCTAGCTATTGCTTGTTTCAAGATCTTGTAACAAAGAAGATTATTGGGAAAGGACATGAATCTAGAGGACTTTACACTTTTGATCACCCAATATCGACGTCAACGACTGTTGCTTGTTCTGGATTTTTTTCTCCTTTTGATGCCCATTGTCGTCTTCTTGGTCATCCATCCCTCTTACTTTTAAGAAATCTTTGTCATCAGTCTTATAACTTGTCTTCATTGAATTGTGACTCATGTCAGTTTGCCAAATTTCATCTTCTTAGCTCCAGTTCTAGAGTTGACAAACGGGAAAATTCTCCCTTTGAGTTAGTTCATTCTTATATTTGGGGTCCATGTCTAATTGTGTCCAAAGCTGGATTAAGATATTTTGTTACCTTTGTTCATGATCACTCTCGCATGACTAGGTTATATTTTACCAAAAATCATTCTGAGTTACTTTCTCATTTCAGCAATTTTCATGCTGAAATTCGAACACAACTTGGTGTATGGCTTAGAGCCTTGAGAAGTGACAATGTTAGTGAGTAA

Coding sequence (CDS)

ATGGATCATAGACTTTGGTCCTACTGCTTATATGACAGGCAATCCCAAATTATTTCTACAAATTTGTCATCTAAATCCATTACCAATGTTACCCTAGCAGACGAATCAAAATCTTCTATTATTGGATCAGGCATTGTCACCCCATCCCTTTCTCTGTCATCTGTCCTCCACTTACCTCAAGTGTCATTTAGCTTGCTCTCTATTAGTCAAATCACCACTGACCTTAATTGTTGTGTCTCATTCTATCCTAGCTATTGCTTGTTTCAAGATCTTGTAACAAAGAAGATTATTGGGAAAGGACATGAATCTAGAGGACTTTACACTTTTGATCACCCAATATCGACGTCAACGACTGTTGCTTGTTCTGGATTTTTTTCTCCTTTTGATGCCCATTGTCGTCTTCTTGGTCATCCATCCCTCTTACTTTTAAGAAATCTTTGTCATCAGTCTTATAACTTGTCTTCATTGAATTGTGACTCATGTCAGTTTGCCAAATTTCATCTTCTTAGCTCCAGTTCTAGAGTTGACAAACGGGAAAATTCTCCCTTTGAGTTAGTTCATTCTTATATTTGGGGTCCATGTCTAATTGTGTCCAAAGCTGGATTAAGATATTTTGTTACCTTTGTTCATGATCACTCTCGCATGACTAGGTTATATTTTACCAAAAATCATTCTGAGTTACTTTCTCATTTCAGCAATTTTCATGCTGAAATTCGAACACAACTTGGTGTATGGCTTAGAGCCTTGAGAAGTGACAATGTTAGTGAGTAA

Protein sequence

MDHRLWSYCLYDRQSQIISTNLSSKSITNVTLADESKSSIIGSGIVTPSLSLSSVLHLPQVSFSLLSISQITTDLNCCVSFYPSYCLFQDLVTKKIIGKGHESRGLYTFDHPISTSTTVACSGFFSPFDAHCRLLGHPSLLLLRNLCHQSYNLSSLNCDSCQFAKFHLLSSSSRVDKRENSPFELVHSYIWGPCLIVSKAGLRYFVTFVHDHSRMTRLYFTKNHSELLSHFSNFHAEIRTQLGVWLRALRSDNVSE
Homology
BLAST of Cmc07g0192311 vs. NCBI nr
Match: XP_031744753.1 (uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 8.7e-75
Identity = 153/244 (62.70%), Postives = 180/244 (73.77%), Query Frame = 0

Query: 15  SQIISTNLSSKSITNVTLADESKSSIIGSGIV--TPSLSLSSVLHLPQVSFSLLSISQIT 74
           S + S  LS     +VTLAD S SS++GSG +  TPS SLSSVLHLP +SF+L+S SQ+T
Sbjct: 344 SHLFSRPLSPAPFPSVTLADGSTSSVLGSGTIHLTPSFSLSSVLHLPNLSFNLISTSQLT 403

Query: 75  TDLNCCVSFYPSYCLFQDLVTKKIIGKGHESRGLYTFDHPISTSTTVACSGFFSPFDAHC 134
            DLNC V F+  YCLFQD VTKKIIG+G+ES GLY FDH +S +  VAC    SPF+ HC
Sbjct: 404 HDLNCVVMFFSGYCLFQDRVTKKIIGRGYESGGLYLFDHQVSQA--VACPVVPSPFEVHC 463

Query: 135 RLLGHPSLLLLRNLCHQSYNLSSLNCDSCQFAKFHLLSSSSRVDKRENSPFELVHSYIWG 194
           R LGHPSL +L+ L  +  +LSSLNCDSCQFAKFH LSSS RVDKR  +PFELVHS IWG
Sbjct: 464 R-LGHPSLFVLKKLYPEFRSLSSLNCDSCQFAKFHRLSSSPRVDKRAIAPFELVHSDIWG 523

Query: 195 PCLIVSKAGLRYFVTFVHDHSRMTRLYFTKNHSELLSHFSNFHAEIRTQLGVWLRALRSD 254
           PC +VS+ G RYFVTFV DHSR+T LY  KN SELLSHF  FH EI+ Q  V ++ LR+D
Sbjct: 524 PCPVVSQTGFRYFVTFVDDHSRLTWLYLMKNRSELLSHFCAFHTEIKNQFNVSIKTLRTD 583

Query: 255 NVSE 257
           N  E
Sbjct: 584 NAGE 584

BLAST of Cmc07g0192311 vs. NCBI nr
Match: AAT38747.2 (Polyprotein, putative [Solanum demissum])

HSP 1 Score: 252.3 bits (643), Expect = 4.5e-63
Identity = 132/231 (57.14%), Postives = 166/231 (71.86%), Query Frame = 0

Query: 28  TNVTLADESKSSIIGSGIV--TPSLSLSSVLHLPQVSFSLLSISQITTDLNCCVSFYPSY 87
           ++VT+ D S  +I GSG V  T S++LSSVL LP  +F+L+S+S++T +L C VS YP +
Sbjct: 392 SSVTIVDGSSYTIEGSGTVNHTSSITLSSVLGLPSHAFNLISVSKLTKELKCFVSLYPDH 451

Query: 88  CLFQDLVTKKIIGKGHESRGLYTFDHPISTSTTVACSGFFSPFDAHCRLLGHPSLLLLRN 147
           CLFQDL+TK+IIGK H S GLY  D    T  +VACS   SPF+AHCR LGHPSL +L+ 
Sbjct: 452 CLFQDLMTKQIIGKRHVSDGLYILDE--WTPPSVACSSIVSPFEAHCR-LGHPSLPVLKK 511

Query: 148 LCHQSYNLSSLNCDSCQFAKFHLLSSSSRVDKRENSPFELVHSYIWGPCLIVSKAGLRYF 207
           LC Q +N+ S++C+SC FAK H +S S R +KR N  FELVHS +WGPC +VSK G RYF
Sbjct: 512 LCPQFHNVPSIDCESCHFAKHHRISLSPRNNKRANFAFELVHSDVWGPCPVVSKVGFRYF 571

Query: 208 VTFVHDHSRMTRLYFTKNHSELLSHFSNFHAEIRTQLGVWLRALRSDNVSE 257
           VTF+ D SRMT +YF KN SE+ SHFSNF AEI+TQ    +  LRSDN  E
Sbjct: 572 VTFMDDFSRMTWIYFMKNRSEVFSHFSNFCAEIKTQFNASVHILRSDNARE 619

BLAST of Cmc07g0192311 vs. NCBI nr
Match: RVW79690.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 240.4 bits (612), Expect = 1.8e-59
Identity = 127/229 (55.46%), Postives = 160/229 (69.87%), Query Frame = 0

Query: 30  VTLADESKSSIIGSGIVTP--SLSLSSVLHLPQVSFSLLSISQITTDLNCCVSFYPSYCL 89
           VT+AD S   I GSG + P  S++LSSVL+LP ++F+L+S+S++T DLNC VSF+P +C+
Sbjct: 359 VTVADGSTYEIKGSGTMKPTSSITLSSVLNLPNLAFNLISVSKLTKDLNCSVSFFPDHCV 418

Query: 90  FQDLVTKKIIGKGHESRGLYTFDHPISTSTTVACSGFFSPFDAHCRLLGHPSLLLLRNLC 149
           FQDL+TK+  GKGH S GLY  D  +     VAC    SP +AHCR LGHPSL +L+ LC
Sbjct: 419 FQDLMTKRTFGKGHVSDGLYILDEWV--PRPVACVSTASPVEAHCR-LGHPSLPVLKKLC 478

Query: 150 HQSYNLSSLNCDSCQFAKFHLLSSSSRVDKRENSPFELVHSYIWGPCLIVSKAGLRYFVT 209
            Q   L SL+C+SC FAK H  S   R++KR  S FELVHS +WGPC + S+ G RYFVT
Sbjct: 479 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVT 538

Query: 210 FVHDHSRMTRLYFTKNHSELLSHFSNFHAEIRTQLGVWLRALRSDNVSE 257
           FV D SRMT +YF KN SE+ SHF  F AEI+TQ  V ++ LRSDN  E
Sbjct: 539 FVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSDNGKE 584

BLAST of Cmc07g0192311 vs. NCBI nr
Match: RVW56413.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 240.0 bits (611), Expect = 2.3e-59
Identity = 126/226 (55.75%), Postives = 160/226 (70.80%), Query Frame = 0

Query: 30  VTLADESKSSIIGSGIVTP--SLSLSSVLHLPQVSFSLLSISQITTDLNCCVSFYPSYCL 89
           VT+AD S   I GSG V P  S++LSSVL+LP ++F+L+S+S++T +LNC VSF+P +C+
Sbjct: 329 VTVADGSTYEIKGSGAVKPTSSITLSSVLNLPNLAFNLISVSKLTKNLNCSVSFFPDHCV 388

Query: 90  FQDLVTKKIIGKGHESRGLYTFDHPISTSTTVACSGFFSPFDAHCRLLGHPSLLLLRNLC 149
           FQDL+TK+  GKGH S GLY  D  +     VAC    SP +AHCR LGHPSL +L+ LC
Sbjct: 389 FQDLMTKRTFGKGHVSDGLYILDEWV--PRPVACVSTASPVEAHCR-LGHPSLPVLKKLC 448

Query: 150 HQSYNLSSLNCDSCQFAKFHLLSSSSRVDKRENSPFELVHSYIWGPCLIVSKAGLRYFVT 209
            Q   L SL+C+SC FAK H  S   R++KR  S FELVHS +WGPC + S+ G RYFVT
Sbjct: 449 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRVESLFELVHSDVWGPCPVTSQTGFRYFVT 508

Query: 210 FVHDHSRMTRLYFTKNHSELLSHFSNFHAEIRTQLGVWLRALRSDN 254
           FV D SRMT +YF KN SE+ SHF  F AEI+TQ  V+++ LRSDN
Sbjct: 509 FVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVFVKILRSDN 551

BLAST of Cmc07g0192311 vs. NCBI nr
Match: ABY49842.1 (hypothetical protein [Vitis hybrid cultivar])

HSP 1 Score: 239.6 bits (610), Expect = 3.0e-59
Identity = 127/229 (55.46%), Postives = 160/229 (69.87%), Query Frame = 0

Query: 30  VTLADESKSSIIGSGIVTP--SLSLSSVLHLPQVSFSLLSISQITTDLNCCVSFYPSYCL 89
           VT+AD S   I GSG V P  S++LSSVL+LP ++F+L+S+S++T +LNC VSF+P +C+
Sbjct: 360 VTVADGSTYEIKGSGTVKPTSSITLSSVLNLPNLAFNLISVSKLTKNLNCSVSFFPDHCV 419

Query: 90  FQDLVTKKIIGKGHESRGLYTFDHPISTSTTVACSGFFSPFDAHCRLLGHPSLLLLRNLC 149
           FQDL+TK+  GKGH S GLY  D  +     VAC    SP +AHCR LGHPSL +L+ LC
Sbjct: 420 FQDLMTKRTFGKGHVSDGLYILDEWV--PRPVACVSTASPVEAHCR-LGHPSLPVLKKLC 479

Query: 150 HQSYNLSSLNCDSCQFAKFHLLSSSSRVDKRENSPFELVHSYIWGPCLIVSKAGLRYFVT 209
            Q   L SL+C+SC FAK H  S   R++KR  S FELVHS +WGPC + S+ G RYFVT
Sbjct: 480 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVT 539

Query: 210 FVHDHSRMTRLYFTKNHSELLSHFSNFHAEIRTQLGVWLRALRSDNVSE 257
           FV D SRMT +YF KN SE+ SHF  F AEI+TQ  V ++ LRSDN  E
Sbjct: 540 FVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSDNGKE 585

BLAST of Cmc07g0192311 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-12
Identity = 72/241 (29.88%), Postives = 105/241 (43.57%), Query Frame = 0

Query: 30  VTLADESKSSIIGSG------IVTPSLSLSSVLHLPQVSFSLLSISQITTDLNCCVSFYP 89
           V + + S S I G G       V  +L L  V H+P +  +L+S   +  D       Y 
Sbjct: 322 VKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRD------GYE 381

Query: 90  SYCLFQDLVTKK---IIGKGHESRGLYTFDHPISTSTTVACSGFFSPFDAHCRLLGHPS- 149
           SY   Q     K   +I KG     LY  +  I      A     S  D   + +GH S 
Sbjct: 382 SYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEIS-VDLWHKRMGHMSE 441

Query: 150 ----LLLLRNLCHQSYNLSSLNCDSCQFAKFHLLSSSSRVDKRENSPFELVHSYIWGPCL 209
               +L  ++L   +   +   CD C F K H +S  +  +++ N   +LV+S + GP  
Sbjct: 442 KGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNI-LDLVYSDVCGPME 501

Query: 210 IVSKAGLRYFVTFVHDHSRMTRLYFTKNHSELLSHFSNFHAEIRTQLGVWLRALRSDNVS 257
           I S  G +YFVTF+ D SR   +Y  K   ++   F  FHA +  + G  L+ LRSDN  
Sbjct: 502 IESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGG 554

BLAST of Cmc07g0192311 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-11
Identity = 72/246 (29.27%), Postives = 114/246 (46.34%), Query Frame = 0

Query: 29  NVTLADESKSSIIGSGIV-----TPSLSLSSVLHLPQVSFSLLSISQITTDLNCCVSFYP 88
           +V +AD S   I  +G       + SL L+ VL++P +  +L+S+ ++       V F+P
Sbjct: 338 DVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFP 397

Query: 89  SYCLFQDLVTKKIIGKGHESRGLYTFDHPISTSTTVACSGFFSPFDA------HCRLLGH 148
           +    +DL T   + +G     LY  + PI++S  V  S F SP         H R LGH
Sbjct: 398 ASFQVKDLNTGVPLLQGKTKDELY--EWPIASSQAV--SMFASPCSKATHSSWHSR-LGH 457

Query: 149 PSLLLLRNLCHQSYNLSSLN-------CDSCQFAKFHLLSSSSRVDKRENSPFELVHSYI 208
           PSL +L ++   +++L  LN       C  C   K H +  S+      + P E ++S +
Sbjct: 458 PSLAILNSVI-SNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNST-ITSSKPLEYIYSDV 517

Query: 209 WGPCLIVSKAGLRYFVTFVHDHSRMTRLYFTKNHSELLSHFSNFHAEIRTQLGVWLRALR 257
           W    I+S    RY+V FV   +R T LY  K  S++   F  F + +  +    +  L 
Sbjct: 518 WS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLY 575

BLAST of Cmc07g0192311 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-09
Identity = 70/251 (27.89%), Postives = 117/251 (46.61%), Query Frame = 0

Query: 29  NVTLADESKSSIIGSGIVTPS-----LSLSSVLHLPQVSFSLLSISQITTDLNCCVSFYP 88
           +V +AD S   I  +G  + S     L+L ++L++P +  +L+S+ ++       V F+P
Sbjct: 359 DVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFP 418

Query: 89  SYCLFQDLVTKKIIGKGHESRGLYTFDHPISTSTTVACSGFFSPFDA------HCRLLGH 148
           +    +DL T   + +G     LY  + PI++S  V  S F SP         H R LGH
Sbjct: 419 ASFQVKDLNTGVPLLQGKTKDELY--EWPIASSQPV--SLFASPSSKATHSSWHAR-LGH 478

Query: 149 PSLLLLRNLCHQSYNLSSLN-------CDSCQFAKFHLLSSSSRVDKRENS-----PFEL 208
           P+  +L ++   +Y+LS LN       C  C      L++ S++V   +++     P E 
Sbjct: 479 PAPSILNSVI-SNYSLSVLNPSHKFLSCSDC------LINKSNKVPFSQSTINSTRPLEY 538

Query: 209 VHSYIWGPCLIVSKAGLRYFVTFVHDHSRMTRLYFTKNHSELLSHFSNFHAEIRTQLGVW 257
           ++S +W    I+S    RY+V FV   +R T LY  K  S++   F  F   +  +    
Sbjct: 539 IYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTR 596

BLAST of Cmc07g0192311 vs. ExPASy TrEMBL
Match: Q6L3Q0 (Polyprotein, putative OS=Solanum demissum OX=50514 GN=SDM1_42t00018 PE=4 SV=2)

HSP 1 Score: 252.3 bits (643), Expect = 2.2e-63
Identity = 132/231 (57.14%), Postives = 166/231 (71.86%), Query Frame = 0

Query: 28  TNVTLADESKSSIIGSGIV--TPSLSLSSVLHLPQVSFSLLSISQITTDLNCCVSFYPSY 87
           ++VT+ D S  +I GSG V  T S++LSSVL LP  +F+L+S+S++T +L C VS YP +
Sbjct: 392 SSVTIVDGSSYTIEGSGTVNHTSSITLSSVLGLPSHAFNLISVSKLTKELKCFVSLYPDH 451

Query: 88  CLFQDLVTKKIIGKGHESRGLYTFDHPISTSTTVACSGFFSPFDAHCRLLGHPSLLLLRN 147
           CLFQDL+TK+IIGK H S GLY  D    T  +VACS   SPF+AHCR LGHPSL +L+ 
Sbjct: 452 CLFQDLMTKQIIGKRHVSDGLYILDE--WTPPSVACSSIVSPFEAHCR-LGHPSLPVLKK 511

Query: 148 LCHQSYNLSSLNCDSCQFAKFHLLSSSSRVDKRENSPFELVHSYIWGPCLIVSKAGLRYF 207
           LC Q +N+ S++C+SC FAK H +S S R +KR N  FELVHS +WGPC +VSK G RYF
Sbjct: 512 LCPQFHNVPSIDCESCHFAKHHRISLSPRNNKRANFAFELVHSDVWGPCPVVSKVGFRYF 571

Query: 208 VTFVHDHSRMTRLYFTKNHSELLSHFSNFHAEIRTQLGVWLRALRSDNVSE 257
           VTF+ D SRMT +YF KN SE+ SHFSNF AEI+TQ    +  LRSDN  E
Sbjct: 572 VTFMDDFSRMTWIYFMKNRSEVFSHFSNFCAEIKTQFNASVHILRSDNARE 619

BLAST of Cmc07g0192311 vs. ExPASy TrEMBL
Match: A0A438H537 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4131 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 8.6e-60
Identity = 127/229 (55.46%), Postives = 160/229 (69.87%), Query Frame = 0

Query: 30  VTLADESKSSIIGSGIVTP--SLSLSSVLHLPQVSFSLLSISQITTDLNCCVSFYPSYCL 89
           VT+AD S   I GSG + P  S++LSSVL+LP ++F+L+S+S++T DLNC VSF+P +C+
Sbjct: 359 VTVADGSTYEIKGSGTMKPTSSITLSSVLNLPNLAFNLISVSKLTKDLNCSVSFFPDHCV 418

Query: 90  FQDLVTKKIIGKGHESRGLYTFDHPISTSTTVACSGFFSPFDAHCRLLGHPSLLLLRNLC 149
           FQDL+TK+  GKGH S GLY  D  +     VAC    SP +AHCR LGHPSL +L+ LC
Sbjct: 419 FQDLMTKRTFGKGHVSDGLYILDEWV--PRPVACVSTASPVEAHCR-LGHPSLPVLKKLC 478

Query: 150 HQSYNLSSLNCDSCQFAKFHLLSSSSRVDKRENSPFELVHSYIWGPCLIVSKAGLRYFVT 209
            Q   L SL+C+SC FAK H  S   R++KR  S FELVHS +WGPC + S+ G RYFVT
Sbjct: 479 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVT 538

Query: 210 FVHDHSRMTRLYFTKNHSELLSHFSNFHAEIRTQLGVWLRALRSDNVSE 257
           FV D SRMT +YF KN SE+ SHF  F AEI+TQ  V ++ LRSDN  E
Sbjct: 539 FVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSDNGKE 584

BLAST of Cmc07g0192311 vs. ExPASy TrEMBL
Match: A0A438F8X8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2269 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.1e-59
Identity = 126/226 (55.75%), Postives = 160/226 (70.80%), Query Frame = 0

Query: 30  VTLADESKSSIIGSGIVTP--SLSLSSVLHLPQVSFSLLSISQITTDLNCCVSFYPSYCL 89
           VT+AD S   I GSG V P  S++LSSVL+LP ++F+L+S+S++T +LNC VSF+P +C+
Sbjct: 329 VTVADGSTYEIKGSGAVKPTSSITLSSVLNLPNLAFNLISVSKLTKNLNCSVSFFPDHCV 388

Query: 90  FQDLVTKKIIGKGHESRGLYTFDHPISTSTTVACSGFFSPFDAHCRLLGHPSLLLLRNLC 149
           FQDL+TK+  GKGH S GLY  D  +     VAC    SP +AHCR LGHPSL +L+ LC
Sbjct: 389 FQDLMTKRTFGKGHVSDGLYILDEWV--PRPVACVSTASPVEAHCR-LGHPSLPVLKKLC 448

Query: 150 HQSYNLSSLNCDSCQFAKFHLLSSSSRVDKRENSPFELVHSYIWGPCLIVSKAGLRYFVT 209
            Q   L SL+C+SC FAK H  S   R++KR  S FELVHS +WGPC + S+ G RYFVT
Sbjct: 449 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRVESLFELVHSDVWGPCPVTSQTGFRYFVT 508

Query: 210 FVHDHSRMTRLYFTKNHSELLSHFSNFHAEIRTQLGVWLRALRSDN 254
           FV D SRMT +YF KN SE+ SHF  F AEI+TQ  V+++ LRSDN
Sbjct: 509 FVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVFVKILRSDN 551

BLAST of Cmc07g0192311 vs. ExPASy TrEMBL
Match: A5AWD0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019194 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.5e-59
Identity = 127/229 (55.46%), Postives = 160/229 (69.87%), Query Frame = 0

Query: 30  VTLADESKSSIIGSGIVTP--SLSLSSVLHLPQVSFSLLSISQITTDLNCCVSFYPSYCL 89
           VT+AD S   I GSG V P  S++LSSVL+LP ++F+L+S+S++T +LNC VSF+P +C+
Sbjct: 360 VTVADGSTYEIKGSGTVKPTSSITLSSVLNLPNLAFNLISVSKLTKNLNCSVSFFPDHCV 419

Query: 90  FQDLVTKKIIGKGHESRGLYTFDHPISTSTTVACSGFFSPFDAHCRLLGHPSLLLLRNLC 149
           FQDL+TK+  GKGH S GLY  D  +     VAC    SP +AHCR LGHPSL +L+ LC
Sbjct: 420 FQDLMTKRTFGKGHVSDGLYILDEWV--PRPVACVSTASPVEAHCR-LGHPSLPVLKKLC 479

Query: 150 HQSYNLSSLNCDSCQFAKFHLLSSSSRVDKRENSPFELVHSYIWGPCLIVSKAGLRYFVT 209
            Q   L SL+C+SC FAK H  S   R++KR  S FELVHS +WGPC + S+ G RYFVT
Sbjct: 480 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVT 539

Query: 210 FVHDHSRMTRLYFTKNHSELLSHFSNFHAEIRTQLGVWLRALRSDNVSE 257
           FV D SRMT +YF KN SE+ SHF  F AEI+TQ  V ++ LRSDN  E
Sbjct: 540 FVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSDNGKE 585

BLAST of Cmc07g0192311 vs. ExPASy TrEMBL
Match: A0A438GAA6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2601 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.5e-59
Identity = 127/229 (55.46%), Postives = 160/229 (69.87%), Query Frame = 0

Query: 30  VTLADESKSSIIGSGIVTP--SLSLSSVLHLPQVSFSLLSISQITTDLNCCVSFYPSYCL 89
           VT+AD S   I GSG V P  S++LSSVL+LP ++F+L+S+S++T +LNC VSF+P +C+
Sbjct: 299 VTVADGSTYEIKGSGTVKPTSSITLSSVLNLPNLAFNLISVSKLTKNLNCSVSFFPDHCV 358

Query: 90  FQDLVTKKIIGKGHESRGLYTFDHPISTSTTVACSGFFSPFDAHCRLLGHPSLLLLRNLC 149
           FQDL+TK+  GKGH S GLY  D  +     VAC    SP +AHCR LGHPSL +L+ LC
Sbjct: 359 FQDLMTKRTFGKGHVSDGLYILDEWV--PRPVACVSTASPVEAHCR-LGHPSLPVLKKLC 418

Query: 150 HQSYNLSSLNCDSCQFAKFHLLSSSSRVDKRENSPFELVHSYIWGPCLIVSKAGLRYFVT 209
            Q   L SL+C+SC FAK H  S   R++KR  S FELVHS +WGPC + S+ G RYFVT
Sbjct: 419 PQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWGPCPVTSQTGFRYFVT 478

Query: 210 FVHDHSRMTRLYFTKNHSELLSHFSNFHAEIRTQLGVWLRALRSDNVSE 257
           FV D SRMT +YF KN SE+ SHF  F AEI+TQ  V ++ LRSDN  E
Sbjct: 479 FVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSDNGKE 524

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031744753.18.7e-7562.70uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus][more]
AAT38747.24.5e-6357.14Polyprotein, putative [Solanum demissum][more]
RVW79690.11.8e-5955.46Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW56413.12.3e-5955.75Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
ABY49842.13.0e-5955.46hypothetical protein [Vitis hybrid cultivar][more]
Match NameE-valueIdentityDescription
P109781.7e-1229.88Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q9ZT943.2e-1129.27Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW22.3e-0927.89Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
Q6L3Q02.2e-6357.14Polyprotein, putative OS=Solanum demissum OX=50514 GN=SDM1_42t00018 PE=4 SV=2[more]
A0A438H5378.6e-6055.46Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438F8X81.1e-5955.75Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A5AWD01.5e-5955.46Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019194 PE=4 SV=1[more]
A0A438GAA61.5e-5955.46Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 174..256
e-value: 4.9E-7
score: 31.2
NoneNo IPR availablePANTHERPTHR11439:SF324RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATEDcoord: 77..253
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 77..253
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 181..253

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0192311.1Cmc07g0192311.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding