Cmc07g0192101 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0192101
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 12530069 .. 12530758 (+)
RNA-Seq Expression	Cmc07g0192101
Synteny	Cmc07g0192101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACACTACCTGTACGTGAGAAGATACAAATTTTCACTGACCATAAGATTCTAAAGTACTTCTTCACCCAAAAGGAGTTGAACATGAGAAAGAGAAGATGGCTTGAGTTGGTGAAGGATTATGATTGCGAGATTCTGTACCACCCAAGTAAGGCAAATGTAGTAGCTGATGTGTTGTATAGGAAGGTTGCACATTCAGCAGCGCTTATCACTAAGCAAGCTCCCTTACTCAGAGATTTTAAGAGAGCCGAGATTGAAGTCTCGGTAGGGGAAGTTACCTCACAGTTGGCTCAGTTGTTAGTGCAGCCAACCTTGAGACAAAGGATTATTGTTGCTCAGCTAAATGATCCTTATTTGGTCGAGAAGCATCTATTAGTAGAGGCAGGGCAAGGTGAGGATTTCTCCATATCCTCTGATGATGGACTTACATTTGATGGACGTTTGTGCGTGCCAGAAGAAAGTGCAATCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTCCATTTACTATGCACCTTGGAAGTACGAAGATGTACAAAGACTTGAGGTGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGGCTTCATCAATAGATGTTTGGTGTGCCAGCAGGTGAAGGCACCTAGACAAAGGCCAGCAGGGTTGTTGCAACCCTTGAGTGTGCCAGGCTTGAAATGA

mRNA sequence

ATGGAGACACTACCTGTACGTGAGAAGATACAAATTTTCACTGACCATAAGATTCTAAAGTACTTCTTCACCCAAAAGGAGTTGAACATGAGAAAGAGAAGATGGCTTGAGTTGGTGAAGGATTATGATTGCGAGATTCTGTACCACCCAAGTAAGGCAAATGTAGTAGCTGATGTGTTGTATAGGAAGGTTGCACATTCAGCAGCGCTTATCACTAAGCAAGCTCCCTTACTCAGAGATTTTAAGAGAGCCGAGATTGAAGTCTCGGTAGGGGAAGTTACCTCACAGTTGGCTCAGTTGTTAGTGCAGCCAACCTTGAGACAAAGGATTATTGTTGCTCAGCTAAATGATCCTTATTTGGTCGAGAAGCATCTATTAGTAGAGGCAGGGCAAGGTGAGGATTTCTCCATATCCTCTGATGATGGACTTACATTTGATGGACGTTTGTGCGTGCCAGAAGAAAGTGCAATCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTCCATTTACTATGCACCTTGGAAGTACGAAGATGTACAAAGACTTGAGGTGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGGCTTCATCAATAGATGTTTGGTGTGCCAGCAGGTGAAGGCACCTAGACAAAGGCCAGCAGGGTTGTTGCAACCCTTGAGTGTGCCAGGCTTGAAATGA

Coding sequence (CDS)

ATGGAGACACTACCTGTACGTGAGAAGATACAAATTTTCACTGACCATAAGATTCTAAAGTACTTCTTCACCCAAAAGGAGTTGAACATGAGAAAGAGAAGATGGCTTGAGTTGGTGAAGGATTATGATTGCGAGATTCTGTACCACCCAAGTAAGGCAAATGTAGTAGCTGATGTGTTGTATAGGAAGGTTGCACATTCAGCAGCGCTTATCACTAAGCAAGCTCCCTTACTCAGAGATTTTAAGAGAGCCGAGATTGAAGTCTCGGTAGGGGAAGTTACCTCACAGTTGGCTCAGTTGTTAGTGCAGCCAACCTTGAGACAAAGGATTATTGTTGCTCAGCTAAATGATCCTTATTTGGTCGAGAAGCATCTATTAGTAGAGGCAGGGCAAGGTGAGGATTTCTCCATATCCTCTGATGATGGACTTACATTTGATGGACGTTTGTGCGTGCCAGAAGAAAGTGCAATCAAGACAGAGCTTTTGACTGAGGCTCACAGTTCTCCATTTACTATGCACCTTGGAAGTACGAAGATGTACAAAGACTTGAGGTGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGGCTTCATCAATAGATGTTTGGTGTGCCAGCAGGTGAAGGCACCTAGACAAAGGCCAGCAGGGTTGTTGCAACCCTTGAGTGTGCCAGGCTTGAAATGA

Protein sequence

METLPVREKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVLYRKVAHSAALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYLVEKHLLVEAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMYKDLRCVYWWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK

Homology

[Close]

BLAST of Cmc07g0192101 vs. NCBI nr
Match: KAA0046144.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 458.8 bits (1179), Expect = 2.8e-125
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   METLPVREKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVL 60
           METLPVREKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVL
Sbjct: 1   METLPVREKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVL 60

Query: 61  YRKVAHSAALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYL 120
           YRKVAHSAALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYL
Sbjct: 61  YRKVAHSAALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYL 120

Query: 121 VEKHLLVEAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMY 180
           VEKHLLVEAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMY
Sbjct: 121 VEKHLLVEAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMY 180

Query: 181 KDLRCVYWWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK 230
           KDLRCVYWWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK
Sbjct: 181 KDLRCVYWWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK 229

[Close]

BLAST of Cmc07g0192101 vs. NCBI nr
Match: KAA0041490.1 (hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 396.4 bits (1017), Expect = 1.7e-106
Identity = 198/222 (89.19%), Postives = 206/222 (92.79%), Query Frame = 0


Query: 8   EKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVLYRKVAHS 67
           EKIQI+TDHK LKYFFTQKELNMR RRWLELVKDYDCEILYHP KANVVAD L RKVAHS
Sbjct: 707 EKIQIYTDHKSLKYFFTQKELNMRHRRWLELVKDYDCEILYHPGKANVVADALSRKVAHS 766

Query: 68  AALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYLVEKHLLV 127
           AALITKQAPLLRDF+RAEI VSVGEVTSQLAQL VQPTLRQRIIVAQLNDPYLVEK  LV
Sbjct: 767 AALITKQAPLLRDFERAEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLV 826

Query: 128 EAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMYKDLRCVY 187
           E GQGEDFSIS DDGL F+GRLCVPE+SA+KTELLTEAHSSPFTMH GSTKMY+DLR VY
Sbjct: 827 ETGQGEDFSISFDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVY 886

Query: 188 WWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK 230
           WWRNMKREVA F++RCLVCQQVKAPRQRPAGLLQPLSVPG K
Sbjct: 887 WWRNMKREVADFVSRCLVCQQVKAPRQRPAGLLQPLSVPGWK 928

[Close]

BLAST of Cmc07g0192101 vs. NCBI nr
Match: KAA0050011.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 396.4 bits (1017), Expect = 1.7e-106
Identity = 198/222 (89.19%), Postives = 207/222 (93.24%), Query Frame = 0


Query: 8   EKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVLYRKVAHS 67
           EKIQI TDHK LKYFFTQKELNMR+RRWLELVKDYDCE+LYHP KANVVAD L RKVAHS
Sbjct: 642 EKIQIITDHKSLKYFFTQKELNMRQRRWLELVKDYDCEMLYHPGKANVVADALSRKVAHS 701

Query: 68  AALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYLVEKHLLV 127
           AALITKQAPLLRDF+RAEI VSVGEVTSQLAQL VQPTLRQRIIVAQLNDPYLVEK  LV
Sbjct: 702 AALITKQAPLLRDFERAEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLV 761

Query: 128 EAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMYKDLRCVY 187
           E GQGEDFSISSDDGLTF+GRLCVP++SAIKTELLTE HSSPFTMH GSTKMY+DLR VY
Sbjct: 762 ETGQGEDFSISSDDGLTFEGRLCVPKDSAIKTELLTEIHSSPFTMHPGSTKMYQDLRSVY 821

Query: 188 WWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK 230
           WWRNMKREVA F++RCLVCQQVKAPRQRPAGLLQPLSVPG K
Sbjct: 822 WWRNMKREVADFVSRCLVCQQVKAPRQRPAGLLQPLSVPGWK 863

[Close]

BLAST of Cmc07g0192101 vs. NCBI nr
Match: TYK24364.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 396.4 bits (1017), Expect = 1.7e-106
Identity = 198/222 (89.19%), Postives = 206/222 (92.79%), Query Frame = 0


Query: 8   EKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVLYRKVAHS 67
           EKIQI+TDHK LKYFFTQKELNMR RRWLELVKDYDCEILYHP KANVVAD L RKVAHS
Sbjct: 707 EKIQIYTDHKSLKYFFTQKELNMRHRRWLELVKDYDCEILYHPGKANVVADALSRKVAHS 766

Query: 68  AALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYLVEKHLLV 127
           AALITKQAPLLRDF+RAEI VSVGEVTSQLAQL VQPTLRQRIIVAQLNDPYLVEK  LV
Sbjct: 767 AALITKQAPLLRDFERAEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLV 826

Query: 128 EAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMYKDLRCVY 187
           E GQGEDFSIS DDGL F+GRLCVPE+SA+KTELLTEAHSSPFTMH GSTKMY+DLR VY
Sbjct: 827 ETGQGEDFSISFDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVY 886

Query: 188 WWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK 230
           WWRNMKREVA F++RCLVCQQVKAPRQRPAGLLQPLSVPG K
Sbjct: 887 WWRNMKREVADFVSRCLVCQQVKAPRQRPAGLLQPLSVPGWK 928

[Close]

BLAST of Cmc07g0192101 vs. NCBI nr
Match: TYK27796.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 395.2 bits (1014), Expect = 3.8e-106
Identity = 198/222 (89.19%), Postives = 207/222 (93.24%), Query Frame = 0


Query: 8   EKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVLYRKVAHS 67
           EKIQIFTDHK LKYFFTQKELNMR+RRWLELVKDYDCEILYHP KANVVAD L RKVAHS
Sbjct: 289 EKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADTLSRKVAHS 348

Query: 68  AALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYLVEKHLLV 127
           AALITKQAPLL+DF+RAEI VSVGEVTSQLAQL VQPTLRQRIIVAQLNDPYLVEK  LV
Sbjct: 349 AALITKQAPLLKDFERAEIVVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLV 408

Query: 128 EAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMYKDLRCVY 187
           E GQGEDFSISSDDGLTF+GRLCVPE+ A+KTELLTEAHSSPFTMHLGSTKMYKDLR +Y
Sbjct: 409 ETGQGEDFSISSDDGLTFEGRLCVPEDIAVKTELLTEAHSSPFTMHLGSTKMYKDLRSIY 468

Query: 188 WWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK 230
           WWRNMKREVA F++RCLV QQVKAPRQRPAGLLQPLSV G K
Sbjct: 469 WWRNMKREVAEFVSRCLVYQQVKAPRQRPAGLLQPLSVSGWK 510

[Close]

BLAST of Cmc07g0192101 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-06
Identity = 21/53 (39.62%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 10  IQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVLYR 63
           I+++TDH+ L +    +  N + +RW   +++Y+CE++Y P K+NVVAD L R
Sbjct: 502 IKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSR 554

[Close]

BLAST of Cmc07g0192101 vs. ExPASy TrEMBL
Match: A0A5A7TSW5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00870 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 1.4e-125
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   METLPVREKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVL 60
           METLPVREKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVL
Sbjct: 1   METLPVREKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVL 60

Query: 61  YRKVAHSAALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYL 120
           YRKVAHSAALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYL
Sbjct: 61  YRKVAHSAALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYL 120

Query: 121 VEKHLLVEAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMY 180
           VEKHLLVEAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMY
Sbjct: 121 VEKHLLVEAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMY 180

Query: 181 KDLRCVYWWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK 230
           KDLRCVYWWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK
Sbjct: 181 KDLRCVYWWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK 229

[Close]

BLAST of Cmc07g0192101 vs. ExPASy TrEMBL
Match: A0A5A7TDX1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G00780 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 8.3e-107
Identity = 198/222 (89.19%), Postives = 206/222 (92.79%), Query Frame = 0


Query: 8   EKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVLYRKVAHS 67
           EKIQI+TDHK LKYFFTQKELNMR RRWLELVKDYDCEILYHP KANVVAD L RKVAHS
Sbjct: 707 EKIQIYTDHKSLKYFFTQKELNMRHRRWLELVKDYDCEILYHPGKANVVADALSRKVAHS 766

Query: 68  AALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYLVEKHLLV 127
           AALITKQAPLLRDF+RAEI VSVGEVTSQLAQL VQPTLRQRIIVAQLNDPYLVEK  LV
Sbjct: 767 AALITKQAPLLRDFERAEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLV 826

Query: 128 EAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMYKDLRCVY 187
           E GQGEDFSIS DDGL F+GRLCVPE+SA+KTELLTEAHSSPFTMH GSTKMY+DLR VY
Sbjct: 827 ETGQGEDFSISFDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVY 886

Query: 188 WWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK 230
           WWRNMKREVA F++RCLVCQQVKAPRQRPAGLLQPLSVPG K
Sbjct: 887 WWRNMKREVADFVSRCLVCQQVKAPRQRPAGLLQPLSVPGWK 928

[Close]

BLAST of Cmc07g0192101 vs. ExPASy TrEMBL
Match: A0A5A7U8T4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001960 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 8.3e-107
Identity = 198/222 (89.19%), Postives = 207/222 (93.24%), Query Frame = 0


Query: 8   EKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVLYRKVAHS 67
           EKIQI TDHK LKYFFTQKELNMR+RRWLELVKDYDCE+LYHP KANVVAD L RKVAHS
Sbjct: 642 EKIQIITDHKSLKYFFTQKELNMRQRRWLELVKDYDCEMLYHPGKANVVADALSRKVAHS 701

Query: 68  AALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYLVEKHLLV 127
           AALITKQAPLLRDF+RAEI VSVGEVTSQLAQL VQPTLRQRIIVAQLNDPYLVEK  LV
Sbjct: 702 AALITKQAPLLRDFERAEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLV 761

Query: 128 EAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMYKDLRCVY 187
           E GQGEDFSISSDDGLTF+GRLCVP++SAIKTELLTE HSSPFTMH GSTKMY+DLR VY
Sbjct: 762 ETGQGEDFSISSDDGLTFEGRLCVPKDSAIKTELLTEIHSSPFTMHPGSTKMYQDLRSVY 821

Query: 188 WWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK 230
           WWRNMKREVA F++RCLVCQQVKAPRQRPAGLLQPLSVPG K
Sbjct: 822 WWRNMKREVADFVSRCLVCQQVKAPRQRPAGLLQPLSVPGWK 863

[Close]

BLAST of Cmc07g0192101 vs. ExPASy TrEMBL
Match: A0A5D3DL91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001470 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 8.3e-107
Identity = 198/222 (89.19%), Postives = 206/222 (92.79%), Query Frame = 0


Query: 8   EKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVLYRKVAHS 67
           EKIQI+TDHK LKYFFTQKELNMR RRWLELVKDYDCEILYHP KANVVAD L RKVAHS
Sbjct: 707 EKIQIYTDHKSLKYFFTQKELNMRHRRWLELVKDYDCEILYHPGKANVVADALSRKVAHS 766

Query: 68  AALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYLVEKHLLV 127
           AALITKQAPLLRDF+RAEI VSVGEVTSQLAQL VQPTLRQRIIVAQLNDPYLVEK  LV
Sbjct: 767 AALITKQAPLLRDFERAEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLV 826

Query: 128 EAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMYKDLRCVY 187
           E GQGEDFSIS DDGL F+GRLCVPE+SA+KTELLTEAHSSPFTMH GSTKMY+DLR VY
Sbjct: 827 ETGQGEDFSISFDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVY 886

Query: 188 WWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK 230
           WWRNMKREVA F++RCLVCQQVKAPRQRPAGLLQPLSVPG K
Sbjct: 887 WWRNMKREVADFVSRCLVCQQVKAPRQRPAGLLQPLSVPGWK 928

[Close]

BLAST of Cmc07g0192101 vs. ExPASy TrEMBL
Match: A0A5D3DVL8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00170 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.9e-106
Identity = 198/222 (89.19%), Postives = 207/222 (93.24%), Query Frame = 0


Query: 8   EKIQIFTDHKILKYFFTQKELNMRKRRWLELVKDYDCEILYHPSKANVVADVLYRKVAHS 67
           EKIQIFTDHK LKYFFTQKELNMR+RRWLELVKDYDCEILYHP KANVVAD L RKVAHS
Sbjct: 289 EKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADTLSRKVAHS 348

Query: 68  AALITKQAPLLRDFKRAEIEVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYLVEKHLLV 127
           AALITKQAPLL+DF+RAEI VSVGEVTSQLAQL VQPTLRQRIIVAQLNDPYLVEK  LV
Sbjct: 349 AALITKQAPLLKDFERAEIVVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLV 408

Query: 128 EAGQGEDFSISSDDGLTFDGRLCVPEESAIKTELLTEAHSSPFTMHLGSTKMYKDLRCVY 187
           E GQGEDFSISSDDGLTF+GRLCVPE+ A+KTELLTEAHSSPFTMHLGSTKMYKDLR +Y
Sbjct: 409 ETGQGEDFSISSDDGLTFEGRLCVPEDIAVKTELLTEAHSSPFTMHLGSTKMYKDLRSIY 468

Query: 188 WWRNMKREVAGFINRCLVCQQVKAPRQRPAGLLQPLSVPGLK 230
           WWRNMKREVA F++RCLV QQVKAPRQRPAGLLQPLSV G K
Sbjct: 469 WWRNMKREVAEFVSRCLVYQQVKAPRQRPAGLLQPLSVSGWK 510

The following BLAST results are available for this feature:

BLAST of Cmc07g0192101 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046144.1	2.8e-125	100.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0041490.1	1.7e-106	89.19	hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa]	[more]
KAA0050011.1	1.7e-106	89.19	pol protein [Cucumis melo var. makuwa]	[more]
TYK24364.1	1.7e-106	89.19	putative polyprotein [Cucumis melo var. makuwa]	[more]
TYK27796.1	3.8e-106	89.19	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0192101 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8I7P9	2.1e-06	39.62	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of Cmc07g0192101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSW5	1.4e-125	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00870 PE...	[more]
A0A5A7TDX1	8.3e-107	89.19	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G...	[more]
A0A5A7U8T4	8.3e-107	89.19	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001960 PE...	[more]
A0A5D3DL91	8.3e-107	89.19	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20...	[more]
A0A5D3DVL8	1.9e-106	89.19	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00170 PE...	[more]

BLAST of Cmc07g0192101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 8..42 e-value: 3.7E-6 score: 27.2
None	No IPR available	GENE3D	1.10.340.70		coord: 119..210 e-value: 5.9E-17 score: 63.7
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 10..70
None	No IPR available	PANTHER	PTHR24559:SF383	DNA/RNA POLYMERASES SUPERFAMILY PROTEIN	coord: 10..70
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 157..211 e-value: 5.6E-16 score: 58.3
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 6..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0192101.1	Cmc07g0192101.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding