Cmc07g0190971 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0190971
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 10381538 .. 10382092 (+)
RNA-Seq Expression	Cmc07g0190971
Synteny	Cmc07g0190971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAGCCGAGCTGAAGGAGCTGAAGGTACAACTGCAGGAGTTGCTGGACAAGGGTTTCATCCGACCCAGTGTGTCACTTTGGGAAGCACCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCACCTTTGCATTGACTACAGAGAGCTGAATAAGGTGACAGTCAAGAACCGTTACCCCTTGCCCAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACCGTCTTTTCTAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGGATCAGGGATAGTGATATTCCTAAGACGGCTTTCCGTTACAGATACGGGCACTACGAGTTCATCGTGATGTCCTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGACGACATTTTGATTTACTCCAAAACTGAGGCCGAGCACGAGGAGCATTTGTACCGGGTTTTGGAGACTCTTCGAGCCAATAAGCTGTACGCCAAGTTCTCCAAGTGTGAGTTCTAG

mRNA sequence

ATGGCTCCAGCCGAGCTGAAGGAGCTGAAGGTACAACTGCAGGAGTTGCTGGACAAGGGTTTCATCCGACCCAGTGTGTCACTTTGGGAAGCACCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCACCTTTGCATTGACTACAGAGAGCTGAATAAGGTGACAGTCAAGAACCGTTACCCCTTGCCCAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACCGTCTTTTCTAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGGATCAGGGATAGTGATATTCCTAAGACGGCTTTCCGTTACAGATACGGGCACTACGAGTTCATCGTGATGTCCTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGACGACATTTTGATTTACTCCAAAACTGAGGCCGAGCACGAGGAGCATTTGTACCGGGTTTTGGAGACTCTTCGAGCCAATAAGCTGTACGCCAAGTTCTCCAAGTGTGAGTTCTAG

Coding sequence (CDS)

ATGGCTCCAGCCGAGCTGAAGGAGCTGAAGGTACAACTGCAGGAGTTGCTGGACAAGGGTTTCATCCGACCCAGTGTGTCACTTTGGGAAGCACCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCACCTTTGCATTGACTACAGAGAGCTGAATAAGGTGACAGTCAAGAACCGTTACCCCTTGCCCAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACCGTCTTTTCTAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGGATCAGGGATAGTGATATTCCTAAGACGGCTTTCCGTTACAGATACGGGCACTACGAGTTCATCGTGATGTCCTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGACGACATTTTGATTTACTCCAAAACTGAGGCCGAGCACGAGGAGCATTTGTACCGGGTTTTGGAGACTCTTCGAGCCAATAAGCTGTACGCCAAGTTCTCCAAGTGTGAGTTCTAG

Protein sequence

MAPAELKELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFSKCEF

Homology

[Close]

BLAST of Cmc07g0190971 vs. NCBI nr
Match: TYK01306.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 177/184 (96.20%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS W APVLFVKKKDGSM LCIDYRELNKVTVKNR
Sbjct: 559 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 618

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFR RYGHYEFIVMSFGLT
Sbjct: 619 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRLRYGHYEFIVMSFGLT 678

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL++VLETLRANKLYAKFS
Sbjct: 679 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 738

Query: 181 KCEF 185
           KCEF
Sbjct: 739 KCEF 742

[Close]

BLAST of Cmc07g0190971 vs. NCBI nr
Match: KAA0043063.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 355.1 bits (910), Expect = 3.5e-94
Identity = 175/184 (95.11%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS W APVLFVKKKDGSM LCIDYRELNKVTVKNR
Sbjct: 486 MAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 545

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKTAFR RYGHYEF+VMSFGLT
Sbjct: 546 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 605

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL++VLETLRANKLYAKFS
Sbjct: 606 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 665

Query: 181 KCEF 185
           KCEF
Sbjct: 666 KCEF 669

[Close]

BLAST of Cmc07g0190971 vs. NCBI nr
Match: KAA0051386.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 354.8 bits (909), Expect = 4.6e-94
Identity = 176/184 (95.65%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS W APVLFVKKKDGSM LCIDYRELNKVTVKNR
Sbjct: 268 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 327

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFR RYGHYEFIVMSFGLT
Sbjct: 328 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 387

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+F IVFIDDILIYSKTEAEHEEHL++VLETLRANKLYAKFS
Sbjct: 388 NAPAVFMDLMNRVFKDFLDSFAIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 447

Query: 181 KCEF 185
           KCEF
Sbjct: 448 KCEF 451

[Close]

BLAST of Cmc07g0190971 vs. NCBI nr
Match: TYK20443.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 354.4 bits (908), Expect = 6.0e-94
Identity = 175/184 (95.11%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVS W APVLFVKKKDGSM LCIDYRELNKVTVKNR
Sbjct: 935  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 994

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKTAFR RYGHYEF+VMSFGLT
Sbjct: 995  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 1054

Query: 121  NAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFS 180
            NAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL++VLETLRANKLYAKFS
Sbjct: 1055 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 1114

Query: 181  KCEF 185
            KCEF
Sbjct: 1115 KCEF 1118

[Close]

BLAST of Cmc07g0190971 vs. NCBI nr
Match: KAA0025998.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 354.4 bits (908), Expect = 6.0e-94
Identity = 175/184 (95.11%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS W APVLFVKKKDGSM LCIDYRELNKVTVKNR
Sbjct: 599 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 658

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKTAFR RYGHYEF+VMSFGLT
Sbjct: 659 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 718

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL++VLETLRANKLYAKFS
Sbjct: 719 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 778

Query: 181 KCEF 185
           KCEF
Sbjct: 779 KCEF 782

[Close]

BLAST of Cmc07g0190971 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 163.3 bits (412), Expect = 2.6e-39
Identity = 84/178 (47.19%), Postives = 114/178 (64.04%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNRYPLPRI 66
           +E+   +Q+LLD  FI PS S   +PV+ V KKDG+  LC+DYR LNK T+ + +PLPRI
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  DDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLTNAPAVF 126
           D+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF    G YE+ VM FGL NAP+ F
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 729

Query: 127 MDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFSKCEF 185
              M   F+D    FV V++DDILI+S++  EH +HL  VLE L+   L  K  KC+F
Sbjct: 730 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKF 785

[Close]

BLAST of Cmc07g0190971 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 2.6e-39
Identity = 84/178 (47.19%), Postives = 114/178 (64.04%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNRYPLPRI 66
           +E+   +Q+LLD  FI PS S   +PV+ V KKDG+  LC+DYR LNK T+ + +PLPRI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLTNAPAVF 126
           D+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF    G YE+ VM FGL NAP+ F
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 755

Query: 127 MDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFSKCEF 185
              M   F+D    FV V++DDILI+S++  EH +HL  VLE L+   L  K  KC+F
Sbjct: 756 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKF 811

[Close]

BLAST of Cmc07g0190971 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.2e-37
Identity = 72/184 (39.13%), Postives = 121/184 (65.76%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S ++   PV+FV KK+G++ + +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R  D  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFS 180
            APA F   +N +  +  ++ V+ ++DDILI+SK+E+EH +H+  VL+ L+   L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEF 185
           KCEF
Sbjct: 600 KCEF 603

[Close]

BLAST of Cmc07g0190971 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.2e-37
Identity = 72/184 (39.13%), Postives = 121/184 (65.76%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S ++   PV+FV KK+G++ + +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R  D  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFS 180
            APA F   +N +  +  ++ V+ ++DDILI+SK+E+EH +H+  VL+ L+   L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEF 185
           KCEF
Sbjct: 600 KCEF 603

[Close]

BLAST of Cmc07g0190971 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.2e-37
Identity = 72/184 (39.13%), Postives = 121/184 (65.76%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S ++   PV+FV KK+G++ + +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R  D  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFS 180
            APA F   +N +  +  ++ V+ ++DDILI+SK+E+EH +H+  VL+ L+   L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEF 185
           KCEF
Sbjct: 600 KCEF 603

[Close]

BLAST of Cmc07g0190971 vs. ExPASy TrEMBL
Match: A0A5D3BSV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold827G00060 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.9e-95
Identity = 177/184 (96.20%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS W APVLFVKKKDGSM LCIDYRELNKVTVKNR
Sbjct: 559 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 618

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFR RYGHYEFIVMSFGLT
Sbjct: 619 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRLRYGHYEFIVMSFGLT 678

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL++VLETLRANKLYAKFS
Sbjct: 679 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 738

Query: 181 KCEF 185
           KCEF
Sbjct: 739 KCEF 742

[Close]

BLAST of Cmc07g0190971 vs. ExPASy TrEMBL
Match: A0A5A7TI92 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1291G00020 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 1.7e-94
Identity = 175/184 (95.11%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS W APVLFVKKKDGSM LCIDYRELNKVTVKNR
Sbjct: 486 MAPAELKELKVQLQELLDKGFIRPSVSPWRAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 545

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKTAFR RYGHYEF+VMSFGLT
Sbjct: 546 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 605

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL++VLETLRANKLYAKFS
Sbjct: 606 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 665

Query: 181 KCEF 185
           KCEF
Sbjct: 666 KCEF 669

[Close]

BLAST of Cmc07g0190971 vs. ExPASy TrEMBL
Match: A0A5A7UB12 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001260 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.2e-94
Identity = 176/184 (95.65%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS W APVLFVKKKDGSM LCIDYRELNKVTVKNR
Sbjct: 268 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 327

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFR RYGHYEFIVMSFGLT
Sbjct: 328 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 387

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+F IVFIDDILIYSKTEAEHEEHL++VLETLRANKLYAKFS
Sbjct: 388 NAPAVFMDLMNRVFKDFLDSFAIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 447

Query: 181 KCEF 185
           KCEF
Sbjct: 448 KCEF 451

[Close]

BLAST of Cmc07g0190971 vs. ExPASy TrEMBL
Match: A0A5A7UIB4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001140 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 2.9e-94
Identity = 175/184 (95.11%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS W APVLFVKKKDGSM LCIDYRELNKVTVKNR
Sbjct: 74  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 133

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKTAFR RYGHYEF+VMSFGLT
Sbjct: 134 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 193

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL++VLETLRANKLYAKFS
Sbjct: 194 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 253

Query: 181 KCEF 185
           KCEF
Sbjct: 254 KCEF 257

[Close]

BLAST of Cmc07g0190971 vs. ExPASy TrEMBL
Match: A0A5A7V6R2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00070 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 2.9e-94
Identity = 175/184 (95.11%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSLWEAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS W APVLFVKKKDGSM LCIDYRELNKVTVKNR
Sbjct: 137 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 196

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRYRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKTAFR RYGHYEF+VMSFGLT
Sbjct: 197 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 256

Query: 121 NAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLYRVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL++VLETLRANKLYAKFS
Sbjct: 257 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 316

Query: 181 KCEF 185
           KCEF
Sbjct: 317 KCEF 320

The following BLAST results are available for this feature:

BLAST of Cmc07g0190971 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01306.1	1.2e-94	96.20	pol protein [Cucumis melo var. makuwa]	[more]
KAA0043063.1	3.5e-94	95.11	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051386.1	4.6e-94	95.65	putative Retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK20443.1	6.0e-94	95.11	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025998.1	6.0e-94	95.11	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0190971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	2.6e-39	47.19	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.6e-39	47.19	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	3.2e-37	39.13	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	3.2e-37	39.13	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	3.2e-37	39.13	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc07g0190971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BSV9	5.9e-95	96.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold82...	[more]
A0A5A7TI92	1.7e-94	95.11	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold12...	[more]
A0A5A7UB12	2.2e-94	95.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UIB4	2.9e-94	95.11	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001140 P...	[more]
A0A5A7V6R2	2.9e-94	95.11	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]

BLAST of Cmc07g0190971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..121 e-value: 8.2E-80 score: 269.1
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..184
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..184
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..184 e-value: 5.6304E-86 score: 248.664
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..184 e-value: 1.0E-24 score: 87.3
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..184 e-value: 8.2E-80 score: 269.1
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0190971.1	Cmc07g0190971.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding