Cmc07g0190291 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0190291
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 9354090 .. 9354572 (+)
RNA-Seq Expression	Cmc07g0190291
Synteny	Cmc07g0190291

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCATTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTTAAGAATCGCTATCCTTTGCCCAGGATTGATGATCTGTTCGACCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATTGACCTGCGATCAGGCTACCACCAATTGAGGATCAGAGATAGTGATATCCCTAAAACCGCTTTTCGTTCGAGATACAGACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAAGGTGTTCAAAGATTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATCTTGATCTACTCCAAGACCGAGGCTGAGCATGAGGAGCACTTGCACCAGGTTTTGGAGACTCTTCGAGCCAATAAGTTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGGACATGTGGTTCCAGTGAGGGAGTTTCTGTAG

mRNA sequence

ATGCGCCATTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTTAAGAATCGCTATCCTTTGCCCAGGATTGATGATCTGTTCGACCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATTGACCTGCGATCAGGCTACCACCAATTGAGGATCAGAGATAGTGATATCCCTAAAACCGCTTTTCGTTCGAGATACAGACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAAGGTGTTCAAAGATTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATCTTGATCTACTCCAAGACCGAGGCTGAGCATGAGGAGCACTTGCACCAGGTTTTGGAGACTCTTCGAGCCAATAAGTTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGGACATGTGGTTCCAGTGAGGGAGTTTCTGTAG

Coding sequence (CDS)

ATGCGCCATTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTTAAGAATCGCTATCCTTTGCCCAGGATTGATGATCTGTTCGACCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATTGACCTGCGATCAGGCTACCACCAATTGAGGATCAGAGATAGTGATATCCCTAAAACCGCTTTTCGTTCGAGATACAGACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAAGGTGTTCAAAGATTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATCTTGATCTACTCCAAGACCGAGGCTGAGCATGAGGAGCACTTGCACCAGGTTTTGGAGACTCTTCGAGCCAATAAGTTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGGACATGTGGTTCCAGTGAGGGAGTTTCTGTAG

Protein sequence

MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVPVREFL

Homology

[Close]

BLAST of Cmc07g0190291 vs. NCBI nr
Match: TYK28967.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 303.5 bits (776), Expect = 1.1e-78
Identity = 147/154 (95.45%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MR CIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA
Sbjct: 402 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 461

Query: 61  FRSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRYRHYEFI+MSFGLTNAPAVFMDLMN+VFKDFLD+F+IVFIDDILIYSKTE EHEEH
Sbjct: 462 FRSRYRHYEFIMMSFGLTNAPAVFMDLMNRVFKDFLDSFIIVFIDDILIYSKTEVEHEEH 521

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVV 155
           LHQVLETLRANKLYAKFSKCEFWLKKV FLGHVV
Sbjct: 522 LHQVLETLRANKLYAKFSKCEFWLKKVMFLGHVV 555

[Close]

BLAST of Cmc07g0190291 vs. NCBI nr
Match: TYK04344.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 148/154 (96.10%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MR CIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA
Sbjct: 414 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 473

Query: 61  FRSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRY HYEFIVMSFGLTNAPAVFMDLMN+VFKDFLD+FVIVFIDDILIYSKTEA+HEEH
Sbjct: 474 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAKHEEH 533

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVV 155
           LHQVLETLRANKLYAKFSKCEFWLKKV+FLGHVV
Sbjct: 534 LHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVV 567

[Close]

BLAST of Cmc07g0190291 vs. NCBI nr
Match: KAA0063946.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 147/154 (95.45%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1    MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
            MR CIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA
Sbjct: 867  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 926

Query: 61   FRSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 120
            FRSRY HYEF+VMSFGLTNAPAVFMDLMN+VFKDFLD+FVIVFIDDILIYSKTEAEHEEH
Sbjct: 927  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 986

Query: 121  LHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVV 155
            LHQVLETLRANKLYAKFSKCEFWL+KV+FLGHVV
Sbjct: 987  LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVV 1020

[Close]

BLAST of Cmc07g0190291 vs. NCBI nr
Match: KAA0045950.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 148/154 (96.10%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MR CIDYRELNKVTVKNRY LPRIDDLFDQLQGATVFSKID+RSGYHQLRI+DSDIPKTA
Sbjct: 194 MRLCIDYRELNKVTVKNRYLLPRIDDLFDQLQGATVFSKIDMRSGYHQLRIKDSDIPKTA 253

Query: 61  FRSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRYRHYEFIVMSFGLTNAPAVFMDLMN+VFKDFLDTFVIVFIDDILIYSKTEAEHEEH
Sbjct: 254 FRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 313

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVV 155
           LHQVLETLRANKLYAKFSKCEFWLKKV+FLGHVV
Sbjct: 314 LHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVV 347

[Close]

BLAST of Cmc07g0190291 vs. NCBI nr
Match: TYK24123.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 1.8e-78
Identity = 149/158 (94.30%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           M  CIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA
Sbjct: 487 MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 546

Query: 61  FRSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRY HYEFIVMSFGLTNAP VFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEH+EH
Sbjct: 547 FRSRYEHYEFIVMSFGLTNAPTVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHKEH 606

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVPVRE 159
           LHQVLETLRANKLYAKFSKCEFWLKKVSFLG+VV   E
Sbjct: 607 LHQVLETLRANKLYAKFSKCEFWLKKVSFLGYVVSNEE 644

[Close]

BLAST of Cmc07g0190291 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.7e-34
Identity = 73/130 (56.15%), Postives = 95/130 (73.08%), Query Frame = 0


Query: 1   MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           +R CIDYR L KVT+KN+YP+PR+DDLFD+L  AT F+K+DLRSGY Q+RI   D PKT 
Sbjct: 6   LRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTT 65

Query: 61  FRSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDIL---IYSKTEAEH 120
             +RY  +EF VM FGLTNA A F +LMN V  ++LD FV+V++DD++   IYS +  EH
Sbjct: 66  CVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEH 125

Query: 121 EEHLHQVLET 128
            +HL  V E+
Sbjct: 126 IKHLRVVRES 135

[Close]

BLAST of Cmc07g0190291 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 139.0 bits (349), Expect = 4.5e-32
Identity = 69/157 (43.95%), Postives = 100/157 (63.69%), Query Frame = 0


Query: 2   RHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAF 61
           R C+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF
Sbjct: 647 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 706

Query: 62  RSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEHL 121
            +    YE+ VM FGL NAP+ F   M   F+D    FV V++DDILI+S++  EH +HL
Sbjct: 707 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 766

Query: 122 HQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVPVRE 159
             VLE L+   L  K  KC+F  ++  FLG+ + +++
Sbjct: 767 DTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQK 801

[Close]

BLAST of Cmc07g0190291 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 139.0 bits (349), Expect = 4.5e-32
Identity = 69/157 (43.95%), Postives = 100/157 (63.69%), Query Frame = 0


Query: 2   RHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAF 61
           R C+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF
Sbjct: 673 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 732

Query: 62  RSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEHL 121
            +    YE+ VM FGL NAP+ F   M   F+D    FV V++DDILI+S++  EH +HL
Sbjct: 733 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 792

Query: 122 HQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVPVRE 159
             VLE L+   L  K  KC+F  ++  FLG+ + +++
Sbjct: 793 DTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQK 827

[Close]

BLAST of Cmc07g0190291 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.6e-31
Identity = 63/159 (39.62%), Postives = 103/159 (64.78%), Query Frame = 0


Query: 1   MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           +R  +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R  D  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FR     +E++VM +G++ APA F   +N +  +  ++ V+ ++DDILI+SK+E+EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVPVREF 160
           +  VL+ L+   L    +KCEF   +V F+G+ +  + F
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGF 620

[Close]

BLAST of Cmc07g0190291 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.6e-31
Identity = 63/159 (39.62%), Postives = 103/159 (64.78%), Query Frame = 0


Query: 1   MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           +R  +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R  D  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FR     +E++VM +G++ APA F   +N +  +  ++ V+ ++DDILI+SK+E+EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVPVREF 160
           +  VL+ L+   L    +KCEF   +V F+G+ +  + F
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGF 620

[Close]

BLAST of Cmc07g0190291 vs. ExPASy TrEMBL
Match: A0A5D3DYK2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00620 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.1e-79
Identity = 147/154 (95.45%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MR CIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA
Sbjct: 402 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 461

Query: 61  FRSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRYRHYEFI+MSFGLTNAPAVFMDLMN+VFKDFLD+F+IVFIDDILIYSKTE EHEEH
Sbjct: 462 FRSRYRHYEFIMMSFGLTNAPAVFMDLMNRVFKDFLDSFIIVFIDDILIYSKTEVEHEEH 521

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVV 155
           LHQVLETLRANKLYAKFSKCEFWLKKV FLGHVV
Sbjct: 522 LHQVLETLRANKLYAKFSKCEFWLKKVMFLGHVV 555

[Close]

BLAST of Cmc07g0190291 vs. ExPASy TrEMBL
Match: A0A5A7VBY3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00920 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.7e-79
Identity = 147/154 (95.45%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1    MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
            MR CIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA
Sbjct: 867  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 926

Query: 61   FRSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 120
            FRSRY HYEF+VMSFGLTNAPAVFMDLMN+VFKDFLD+FVIVFIDDILIYSKTEAEHEEH
Sbjct: 927  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 986

Query: 121  LHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVV 155
            LHQVLETLRANKLYAKFSKCEFWL+KV+FLGHVV
Sbjct: 987  LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVV 1020

[Close]

BLAST of Cmc07g0190291 vs. ExPASy TrEMBL
Match: A0A5A7TS21 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G004970 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.7e-79
Identity = 148/154 (96.10%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MR CIDYRELNKVTVKNRY LPRIDDLFDQLQGATVFSKID+RSGYHQLRI+DSDIPKTA
Sbjct: 194 MRLCIDYRELNKVTVKNRYLLPRIDDLFDQLQGATVFSKIDMRSGYHQLRIKDSDIPKTA 253

Query: 61  FRSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRYRHYEFIVMSFGLTNAPAVFMDLMN+VFKDFLDTFVIVFIDDILIYSKTEAEHEEH
Sbjct: 254 FRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 313

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVV 155
           LHQVLETLRANKLYAKFSKCEFWLKKV+FLGHVV
Sbjct: 314 LHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVV 347

[Close]

BLAST of Cmc07g0190291 vs. ExPASy TrEMBL
Match: A0A5D3BZD2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00070 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.7e-79
Identity = 148/154 (96.10%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MR CIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA
Sbjct: 414 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 473

Query: 61  FRSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRY HYEFIVMSFGLTNAPAVFMDLMN+VFKDFLD+FVIVFIDDILIYSKTEA+HEEH
Sbjct: 474 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAKHEEH 533

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVV 155
           LHQVLETLRANKLYAKFSKCEFWLKKV+FLGHVV
Sbjct: 534 LHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVV 567

[Close]

BLAST of Cmc07g0190291 vs. ExPASy TrEMBL
Match: A0A5D3CCF0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00620 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.8e-79
Identity = 148/154 (96.10%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MRHCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MR CIDYRELNKVTVKNRYPLPRIDDLFD LQGATVFSKIDLRSGYHQLRIRDSDIPKTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDSLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60

Query: 61  FRSRYRHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 120
           FRSRY HYEFIVMSFGLTNAPAVFMDLMN+VFKDFLD+FVIVFIDDILIYSKTEAEHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVV 155
           LHQVLETLRANKLYAKFSKCEFWLKKV+FLGHVV
Sbjct: 121 LHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVV 154

The following BLAST results are available for this feature:

BLAST of Cmc07g0190291 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28967.1	1.1e-78	95.45	pol protein [Cucumis melo var. makuwa]	[more]
TYK04344.1	1.4e-78	96.10	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0063946.1	1.4e-78	95.45	pol protein [Cucumis melo var. makuwa]	[more]
KAA0045950.1	1.4e-78	96.10	pol protein [Cucumis melo var. makuwa]	[more]
TYK24123.1	1.8e-78	94.30	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0190291 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	3.7e-34	56.15	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	4.5e-32	43.95	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	4.5e-32	43.95	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	6.6e-31	39.62	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	6.6e-31	39.62	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc07g0190291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYK2	5.1e-79	95.45	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00620 PE...	[more]
A0A5A7VBY3	6.7e-79	95.45	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61...	[more]
A0A5A7TS21	6.7e-79	96.10	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5D3BZD2	6.7e-79	96.10	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold67...	[more]
A0A5D3CCF0	8.8e-79	96.10	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00620 PE=...	[more]

BLAST of Cmc07g0190291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 5..153 e-value: 7.1E-26 score: 91.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..154 score: 10.105557
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 3.2E-68 score: 231.2
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..153
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..153
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..154 e-value: 7.81094E-82 score: 237.108
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..154 e-value: 3.2E-68 score: 231.2
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0190291.1	Cmc07g0190291.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding