Cmc07g0190141 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0190141
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr07: 9138038 .. 9138493 (-)
RNA-Seq Expression	Cmc07g0190141
Synteny	Cmc07g0190141

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTACTGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAACATTTTCAGTAAATTTGTTAGCAAGATATAATTCTTCTCCAACAAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATTGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCATAA

mRNA sequence

ATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTACTGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAACATTTTCAGTAAATTTGTTAGCAAGATATAATTCTTCTCCAACAAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATTGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCATAA

Coding sequence (CDS)

ATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTACTGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAACATTTTCAGTAAATTTGTTAGCAAGATATAATTCTTCTCCAACAAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATTGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCATAA

Protein sequence

MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVLYLSAIGALMYLANNTRPDITFSVNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHA

Homology

[Close]

BLAST of Cmc07g0190141 vs. NCBI nr
Match: KAA0038947.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK11197.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 294.3 bits (752), Expect = 6.1e-76
Identity = 144/151 (95.36%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVLYLSAIGALMYLANNTRPDITFS 60
           MDKAH LNIPMVVRSLDVKKDIFRPREDNEELLGPEV YL+AIGALMYLANNTRPDI+FS
Sbjct: 1   MDKAHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNAIGALMYLANNTRPDISFS 60

Query: 61  VNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPHKAR 120
           VNLLARY+SSPTKRHWN VKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDP KAR
Sbjct: 61  VNLLARYSSSPTKRHWNEVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPRKAR 120

Query: 121 SQTGYLFTCGGTAISWRSVKQTMTATSSNHA 152
           SQTGYLFTCGGTAISWRSVKQTMTATSSNHA
Sbjct: 121 SQTGYLFTCGGTAISWRSVKQTMTATSSNHA 151

[Close]

BLAST of Cmc07g0190141 vs. NCBI nr
Match: KAA0067250.1 (Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa])

HSP 1 Score: 288.1 bits (736), Expect = 4.4e-74
Identity = 142/151 (94.04%), Postives = 144/151 (95.36%), Query Frame = 0


Query: 1   MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVLYLSAIGALMYLANNTRPDITFS 60
           MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEV YLSAIGALM LANNTRPDI FS
Sbjct: 1   MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMCLANNTRPDIAFS 60

Query: 61  VNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPHKAR 120
           VNLLARY+SSPTKRHWNGVKHVLRYLRGTID+ LFYSNKSNFDLVGYADAGYLSDP KAR
Sbjct: 61  VNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPDKAR 120

Query: 121 SQTGYLFTCGGTAISWRSVKQTMTATSSNHA 152
           SQ GYLFT GGTAISWRSVKQTMTATSSNHA
Sbjct: 121 SQIGYLFTWGGTAISWRSVKQTMTATSSNHA 151

[Close]

BLAST of Cmc07g0190141 vs. NCBI nr
Match: TYK21506.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 133/141 (94.33%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 11  MVVRSLDVKKDIFRPREDNEELLGPEVLYLSAIGALMYLANNTRPDITFSVNLLARYNSS 70
           M+VRSLDVKKDIFRPREDNEELLGPEV YLSAIGALMYLANNTRPDI FSVNLLARY+ S
Sbjct: 1   MLVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSYS 60

Query: 71  PTKRHWNGVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCG 130
           PTKRHWNGVKHVLRYLRGTID+GLFYSNKSNFDLVGYADAG+LSDPHKARSQTGYLFTC 
Sbjct: 61  PTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVGYADAGHLSDPHKARSQTGYLFTCE 120

Query: 131 GTAISWRSVKQTMTATSSNHA 152
           GTAISWRSVKQTMTATSSNHA
Sbjct: 121 GTAISWRSVKQTMTATSSNHA 141

[Close]

BLAST of Cmc07g0190141 vs. NCBI nr
Match: AQY61295.1 (Pol [Coffea arabica])

HSP 1 Score: 259.2 bits (661), Expect = 2.2e-65
Identity = 123/151 (81.46%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1    MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVLYLSAIGALMYLANNTRPDITFS 60
            MDKAH L+ PMVVRSLD  KD FRPRE+NEE+LGPEV YLSAIGALMYLAN TRPDI+F+
Sbjct: 891  MDKAHTLSTPMVVRSLDPNKDPFRPREENEEILGPEVPYLSAIGALMYLANCTRPDISFA 950

Query: 61   VNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPHKAR 120
            VNLLAR++SSPT+RHWNG+KH+ RYL+GTID+GLFYSNKS  +LVGYADAGYLSDPHKAR
Sbjct: 951  VNLLARFSSSPTRRHWNGIKHIFRYLQGTIDLGLFYSNKSKPELVGYADAGYLSDPHKAR 1010

Query: 121  SQTGYLFTCGGTAISWRSVKQTMTATSSNHA 152
            SQTGYLFT GGTAISWRS KQ++ ATSSNHA
Sbjct: 1011 SQTGYLFTYGGTAISWRSTKQSLAATSSNHA 1041

[Close]

BLAST of Cmc07g0190141 vs. NCBI nr
Match: KAF7137709.1 (hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii])

HSP 1 Score: 258.8 bits (660), Expect = 2.8e-65
Identity = 121/151 (80.13%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1    MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVLYLSAIGALMYLANNTRPDITFS 60
            MDKAHPL+ PMVVRSLDV KD FRP E+ E++LGPEV Y+SAIGALMYLAN TRPDI FS
Sbjct: 940  MDKAHPLSTPMVVRSLDVNKDPFRPLEEGEDILGPEVPYMSAIGALMYLANCTRPDIAFS 999

Query: 61   VNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPHKAR 120
            VNLLARY+S+PT+RHW G+KH+ RYLRGTID+GLFYSN S   L+GYADAGYLSDPHKAR
Sbjct: 1000 VNLLARYSSAPTQRHWKGIKHIFRYLRGTIDLGLFYSNGSASQLIGYADAGYLSDPHKAR 1059

Query: 121  SQTGYLFTCGGTAISWRSVKQTMTATSSNHA 152
            SQTGY+FTCGG AISWRSVKQT+TATSSNH+
Sbjct: 1060 SQTGYVFTCGGAAISWRSVKQTLTATSSNHS 1090

[Close]

BLAST of Cmc07g0190141 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-21
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 37  VLYLSAIGALMYLANNTRPDITFSVNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFY 96
           V YLSA+GA+MYL   TRPD+  +V +L+++ S P   HW  +K VLRYL+ T   GL +
Sbjct: 4   VPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEF 63

Query: 97  SNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSS 149
           +      LVGY+DA +  D    RS +GYLF   G  +SWRS KQ   A SS
Sbjct: 64  TRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSS 115

[Close]

BLAST of Cmc07g0190141 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-19
Identity = 61/151 (40.40%), Postives = 80/151 (52.98%), Query Frame = 0


Query: 1    MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVLYLSAIGALMYLANNTRPDITFS 60
            M  A P++ P+       KK    P    E+    +V Y SA+G+LMY    TRPDI  +
Sbjct: 1075 MKNAKPVSTPLAGHLKLSKK--MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHA 1134

Query: 61   VNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPHKAR 120
            V +++R+  +P K HW  VK +LRYLRGT    L +   S+  L GY DA    D    +
Sbjct: 1135 VGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG-SDPILKGYTDADMAGDIDNRK 1194

Query: 121  SQTGYLFTCGGTAISWRSVKQTMTATSSNHA 152
            S TGYLFT  G AISW+S  Q   A S+  A
Sbjct: 1195 SSTGYLFTFSGGAISWQSKLQKCVALSTTEA 1222

[Close]

BLAST of Cmc07g0190141 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.9e-17
Identity = 48/113 (42.48%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 39   YLSAIGALMYLANNTRPDITFSVNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSN 98
            Y   +G+L YLA  TRPD++++VN L++Y   PT  HWN +K VLRYL GT D G+F   
Sbjct: 1228 YRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 99   KSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHA 152
             +   L  Y+DA +  D     S  GY+   G   ISW S KQ     SS  A
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEA 1339

[Close]

BLAST of Cmc07g0190141 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-16
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 41   SAIGALMYLANNTRPDITFSVNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSNKS 100
            S IG LMY+   TRPD+T +VN+L+RY+S      W  +K VLRYL+GTID+ L +    
Sbjct: 1183 SLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNL 1242

Query: 101  NFD--LVGYADAGYLSDPHKARSQTGYLFTC-GGTAISWRSVKQTMTATSSNHA 152
             F+  ++GY D+ +       +S TGYLF       I W + +Q   A SS  A
Sbjct: 1243 AFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEA 1296

[Close]

BLAST of Cmc07g0190141 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-14
Identity = 44/113 (38.94%), Postives = 61/113 (53.98%), Query Frame = 0


Query: 39   YLSAIGALMYLANNTRPDITFSVNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSN 98
            Y   +G+L YLA  TRPDI+++VN L+++   PT+ H   +K +LRYL GT + G+F   
Sbjct: 1245 YRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 99   KSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHA 152
             +   L  Y+DA +  D     S  GY+   G   ISW S KQ     SS  A
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEA 1356

[Close]

BLAST of Cmc07g0190141 vs. ExPASy TrEMBL
Match: A0A5D3CGU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00370 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.9e-76
Identity = 144/151 (95.36%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVLYLSAIGALMYLANNTRPDITFS 60
           MDKAH LNIPMVVRSLDVKKDIFRPREDNEELLGPEV YL+AIGALMYLANNTRPDI+FS
Sbjct: 1   MDKAHLLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLNAIGALMYLANNTRPDISFS 60

Query: 61  VNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPHKAR 120
           VNLLARY+SSPTKRHWN VKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDP KAR
Sbjct: 61  VNLLARYSSSPTKRHWNEVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPRKAR 120

Query: 121 SQTGYLFTCGGTAISWRSVKQTMTATSSNHA 152
           SQTGYLFTCGGTAISWRSVKQTMTATSSNHA
Sbjct: 121 SQTGYLFTCGGTAISWRSVKQTMTATSSNHA 151

[Close]

BLAST of Cmc07g0190141 vs. ExPASy TrEMBL
Match: A0A5D3CKU4 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.1e-74
Identity = 142/151 (94.04%), Postives = 144/151 (95.36%), Query Frame = 0


Query: 1   MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVLYLSAIGALMYLANNTRPDITFS 60
           MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEV YLSAIGALM LANNTRPDI FS
Sbjct: 1   MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMCLANNTRPDIAFS 60

Query: 61  VNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPHKAR 120
           VNLLARY+SSPTKRHWNGVKHVLRYLRGTID+ LFYSNKSNFDLVGYADAGYLSDP KAR
Sbjct: 61  VNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPDKAR 120

Query: 121 SQTGYLFTCGGTAISWRSVKQTMTATSSNHA 152
           SQ GYLFT GGTAISWRSVKQTMTATSSNHA
Sbjct: 121 SQIGYLFTWGGTAISWRSVKQTMTATSSNHA 151

[Close]

BLAST of Cmc07g0190141 vs. ExPASy TrEMBL
Match: A0A5D3DD63 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold518G00010 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.4e-70
Identity = 133/141 (94.33%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 11  MVVRSLDVKKDIFRPREDNEELLGPEVLYLSAIGALMYLANNTRPDITFSVNLLARYNSS 70
           M+VRSLDVKKDIFRPREDNEELLGPEV YLSAIGALMYLANNTRPDI FSVNLLARY+ S
Sbjct: 1   MLVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSYS 60

Query: 71  PTKRHWNGVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCG 130
           PTKRHWNGVKHVLRYLRGTID+GLFYSNKSNFDLVGYADAG+LSDPHKARSQTGYLFTC 
Sbjct: 61  PTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVGYADAGHLSDPHKARSQTGYLFTCE 120

Query: 131 GTAISWRSVKQTMTATSSNHA 152
           GTAISWRSVKQTMTATSSNHA
Sbjct: 121 GTAISWRSVKQTMTATSSNHA 141

[Close]

BLAST of Cmc07g0190141 vs. ExPASy TrEMBL
Match: A0A2N9J4G7 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59221 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 9.5e-67
Identity = 128/151 (84.77%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVLYLSAIGALMYLANNTRPDITFS 60
           MDKAHPL+ PMVVRSLDVKKD FRP+E  EE LGPEV YLSAIGALMYLAN TRPDI FS
Sbjct: 520 MDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFS 579

Query: 61  VNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPHKAR 120
           VNLLARY+S+PT RHWNGVKHVLRYLRGT D+GLFY NKSN  LVGYADAGYLSDPHK R
Sbjct: 580 VNLLARYSSAPTLRHWNGVKHVLRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGR 639

Query: 121 SQTGYLFTCGGTAISWRSVKQTMTATSSNHA 152
           SQTGYLFTCG TAISWRSVKQT++ATSSNH+
Sbjct: 640 SQTGYLFTCGNTAISWRSVKQTISATSSNHS 670

[Close]

BLAST of Cmc07g0190141 vs. ExPASy TrEMBL
Match: A0A2N9FK49 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15524 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 9.5e-67
Identity = 128/151 (84.77%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVLYLSAIGALMYLANNTRPDITFS 60
           MDKAHPL+ PMVVRSLDVKKD FRP+E  EE LGPEV YLSAIGALMYLAN TRPDI FS
Sbjct: 454 MDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFS 513

Query: 61  VNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPHKAR 120
           VNLLARY+S+PT RHWNGVKHVLRYLRGT D+GLFY NKSN  LVGYADAGYLSDPHK R
Sbjct: 514 VNLLARYSSAPTLRHWNGVKHVLRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGR 573

Query: 121 SQTGYLFTCGGTAISWRSVKQTMTATSSNHA 152
           SQTGYLFTCG TAISWRSVKQT++ATSSNH+
Sbjct: 574 SQTGYLFTCGNTAISWRSVKQTISATSSNHS 604

[Close]

BLAST of Cmc07g0190141 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-16
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 39  YLSAIGALMYLANNTRPDITFSVNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSN 98
           Y   IG LMYL   TR DI+F+VN L++++ +P   H   V  +L Y++GT+  GLFYS+
Sbjct: 378 YRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 99  KSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHA 152
           ++   L  ++DA + S     RS  GY    G + ISW+S KQ + + SS  A
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEA 489

[Close]

BLAST of Cmc07g0190141 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-12
Identity = 38/110 (34.55%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 39  YLSAIGALMYLANNTRPDITFSVNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSN 98
           + S +GAL YL   TRPDI+++VN++ +    PT   ++ +K VLRY++GTI  GL+   
Sbjct: 100 FRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 99  KSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSS 149
            S  ++  + D+ +       RS TG+    G   ISW + +Q   + SS
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSS 208

[Close]

BLAST of Cmc07g0190141 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-11
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 47  MYLANNTRPDITFSVNLLARYNSSPTKRHWNGVKHVLRYLRGTIDIGLFYSNKSNFDLVG 106
           MYL   TRPD+TF+VN L++++S+        V  VL Y++GT+  GLFYS  S+  L  
Sbjct: 1   MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 107 YADAGYLSDPHKARSQTGY 126
           +AD+ + S P   RS TG+
Sbjct: 61  FADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc07g0190141 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038947.1	6.1e-76	95.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0067250.1	4.4e-74	94.04	Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa]	[more]
TYK21506.1	1.1e-69	94.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
AQY61295.1	2.2e-65	81.46	Pol [Coffea arabica]	[more]
KAF7137709.1	2.8e-65	80.13	hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii]	[more]

BLAST of Cmc07g0190141 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CV72	1.5e-21	46.43	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P10978	2.4e-19	40.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	3.9e-17	42.48	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	4.3e-16	40.35	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.8e-14	38.94	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc07g0190141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGU0	2.9e-76	95.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CKU4	2.1e-74	94.04	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1	[more]
A0A5D3DD63	5.4e-70	94.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A2N9J4G7	9.5e-67	84.77	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9FK49	9.5e-67	84.77	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]

BLAST of Cmc07g0190141 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.5e-16	39.82	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	3.0e-12	34.55	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	3.3e-11	43.04	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 31..129
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 31..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0190141.1	Cmc07g0190141.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding