Cmc07g0189841 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0189841
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 8680922 .. 8682099 (+)
RNA-Seq Expression	Cmc07g0189841
Synteny	Cmc07g0189841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGATGTGGACTGTGACCAATGGATCAAAGCCATAGACCTCAAAATGGAACTTATGTATTCCAATATTTTCTGGACTCTAGTAGATCAACAAAATGATGTAAATCCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCAACTAGTGGCAAAAGGTTATACACAAAAGGAGGGAATATATTATGAAGAAACTTTCTCTCCTGTTGCCATGATAAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGAACAAAAGGTTTGTAAGCTTAAAAAATGCATTTATGGATTAAAACAAGCATCTAGATCCTGGAATATAAGATTTGATATTGCGATCAAATCCTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATCATCAATTCAACTGTAGCATTCTTAGTTTTGTATGTAGATGACATTCTACTCATTGGGAATGATGTAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACACTAGCCATGTCTCAAACATCTTATATAGACAAAATGTTGTCAAGATATAAGATGCATAATTCCAAAAAGGGTCTGTTGTCGTACAGATATGGAATTCATTTATCAAAAGAACAATGTTCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTACTGTTGGCAGCCTGATGTACGCAATGTTATATACTAGATCTGACATGTACTATTCAGTGGGGATAGTTAGTAGATATAAGTCCAATCCTGGTCGTGATCATTGGACAACCGTTAAGAATATCCTAAAATATTTTATAAGAAAAAAAGACTACATGCTTGTGTATAGTTCTAAGGATCTGATCCTTACTGGATACACTGACTTCAATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAGGATTAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCCTGTATTGTTGACTCCACTATGGAAGCTGAATATGTAGCTGTCTGTGAGGCAGCAAAAGAAGCAGCATGA

mRNA sequence

ATGAATGATGTGGACTGTGACCAATGGATCAAAGCCATAGACCTCAAAATGGAACTTATGTATTCCAATATTTTCTGGACTCTAGTAGATCAACAAAATGATGTAAATCCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCAACTAGTGGCAAAAGGTTATACACAAAAGGAGGGAATATATTATGAAGAAACTTTCTCTCCTGTTGCCATGATAAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGAACAAAAGGATCATCAATTCAACTGTAGCATTCTTAGTTTTGTATGTAGATGACATTCTACTCATTGGGAATGATGTAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACACTAGCCATGTCTCAAACATCTTATATAGACAAAATGTTGTCAAGATATAAGATGCATAATTCCAAAAAGGGTCTGTTGTCGTACAGATATGGAATTCATTTATCAAAAGAACAATGTTCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTACTGTTGGCAGCCTGATGTACGCAATGTTATATACTAGATCTGACATGTACTATTCAGTGGGGATAGTTAGTAGATATAAGTCCAATCCTGGTCGTGATCATTGGACAACCGTTAAGAATATCCTAAAATATTTTATAAGAAAAAAAGACTACATGCTTGTGTATAGTTCTAAGGATCTGATCCTTACTGGATACACTGACTTCAATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAGGATTAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCCTGTATTGTTGACTCCACTATGGAAGCTGAATATGTAGCTGTCTGTGAGGCAGCAAAAGAAGCAGCATGA

Coding sequence (CDS)

ATGAATGATGTGGACTGTGACCAATGGATCAAAGCCATAGACCTCAAAATGGAACTTATGTATTCCAATATTTTCTGGACTCTAGTAGATCAACAAAATGATGTAAATCCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCAACTAGTGGCAAAAGGTTATACACAAAAGGAGGGAATATATTATGAAGAAACTTTCTCTCCTGTTGCCATGATAAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGAACAAAAGGATCATCAATTCAACTGTAGCATTCTTAGTTTTGTATGTAGATGACATTCTACTCATTGGGAATGATGTAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACACTAGCCATGTCTCAAACATCTTATATAGACAAAATGTTGTCAAGATATAAGATGCATAATTCCAAAAAGGGTCTGTTGTCGTACAGATATGGAATTCATTTATCAAAAGAACAATGTTCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTACTGTTGGCAGCCTGATGTACGCAATGTTATATACTAGATCTGACATGTACTATTCAGTGGGGATAGTTAGTAGATATAAGTCCAATCCTGGTCGTGATCATTGGACAACCGTTAAGAATATCCTAAAATATTTTATAAGAAAAAAAGACTACATGCTTGTGTATAGTTCTAAGGATCTGATCCTTACTGGATACACTGACTTCAATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAGGATTAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCCTGTATTGTTGACTCCACTATGGAAGCTGAATATGTAGCTGTCTGTGAGGCAGCAAAAGAAGCAGCATGA

Protein sequence

MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQLVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKNKRIINSTVAFLVLYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSLMYAMLYTRSDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYMLVYSSKDLILTGYTDFNFQTDKDARKSTSGLVFTLNGGAVVWRSIKQSCIVDSTMEAEYVAVCEAAKEAA

Homology

[Close]

BLAST of Cmc07g0189841 vs. NCBI nr
Match: KAA0064270.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK18638.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 646.0 bits (1665), Expect = 1.9e-181
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0


Query: 1   MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ 60
           MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ
Sbjct: 450 MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ 509

Query: 61  LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKNKRIINSTVAFLV 120
           LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKNKRIINSTVAFLV
Sbjct: 510 LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKNKRIINSTVAFLV 569

Query: 121 LYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYI 180
           LYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYI
Sbjct: 570 LYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYI 629

Query: 181 DKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSLMYAMLYTR 240
           DKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSLMYAMLYTR
Sbjct: 630 DKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSLMYAMLYTR 689

Query: 241 SDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYMLVYSSKDLILTGYTDFNFQTD 300
           SDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYMLVYSSKDLILTGYTDFNFQTD
Sbjct: 690 SDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYMLVYSSKDLILTGYTDFNFQTD 749

Query: 301 KDARKSTSGLVFTLNGGAVV 321
           KDARKSTSGLVFTLNGGAVV
Sbjct: 750 KDARKSTSGLVFTLNGGAVV 769

[Close]

BLAST of Cmc07g0189841 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 582.4 bits (1500), Expect = 2.6e-162
Identity = 310/416 (74.52%), Postives = 319/416 (76.68%), Query Frame = 0


Query: 1   MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ 60
           MNDVD DQWIKA+DL+ME MYSN  WTLVDQ NDV PIGCKWIYKRKRDQAGKVQTFKA+
Sbjct: 237 MNDVDRDQWIKAMDLEMESMYSNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 296

Query: 61  LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKN------------ 120
           LVAKGYTQKEGI YEE FS  AMIKSIRILLSIATFYDYEIWQMDVK             
Sbjct: 297 LVAKGYTQKEGIDYEEVFS-FAMIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIY 356

Query: 121 --------------------------------------------------------KRII 180
                                                                   KRI+
Sbjct: 357 MVQPERFIQKGQEQKICKLQKSIYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIM 416

Query: 181 NSTVAFLVLYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTL 240
           NSTVAFLVLYVDDILLIGNDVGHL DIKKWLA QFQMKDLGNAQYVLG+QIVRNRKNKTL
Sbjct: 417 NSTVAFLVLYVDDILLIGNDVGHLADIKKWLAMQFQMKDLGNAQYVLGVQIVRNRKNKTL 476

Query: 241 AMSQTSYIDKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSL 300
           AMSQTSYIDKMLSRYKMHNSKKGLL YRYGIHLSKEQC KTPQEVEDMSNIPYAS VGSL
Sbjct: 477 AMSQTSYIDKMLSRYKMHNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSL 536

Query: 301 MYAMLYTRSDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYMLVYSSKDLILTGY 349
           MY ML TR ++ YSVGIVSR +S PGRDHWTTVKNILKY  R KDYMLVY SKDLILTGY
Sbjct: 537 MYVMLCTRPNICYSVGIVSRCQSKPGRDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGY 596

[Close]

BLAST of Cmc07g0189841 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 553.9 bits (1426), Expect = 9.8e-154
Identity = 288/416 (69.23%), Postives = 315/416 (75.72%), Query Frame = 0


Query: 1    MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ 60
            MNDVD DQWIKA++L+ME MY N  WTLVD  +DV PIGCKWIYKRKRDQAGKVQTFKA+
Sbjct: 812  MNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKAR 871

Query: 61   LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKN------------ 120
            LVAKGYTQKEG+ YEETFSPVAM+KSIRILLSIATFY+YEIWQMDVK             
Sbjct: 872  LVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIY 931

Query: 121  --------------------------------------------------------KRII 180
                                                                    K+I+
Sbjct: 932  MVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIV 991

Query: 181  NSTVAFLVLYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTL 240
            NS VAFL+LYVDDILLIGNDV +LTD+KKWL TQFQMKDLG AQY+LGIQIVRNRKNKTL
Sbjct: 992  NSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTL 1051

Query: 241  AMSQTSYIDKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSL 300
            AMSQ SYIDK+LSRYKM NSKKG L +R+GIHLSKEQC KTPQEVEDM NIPY+S VGSL
Sbjct: 1052 AMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSL 1111

Query: 301  MYAMLYTRSDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYMLVYSSKDLILTGY 349
            MYAML TR D+ YSVGIVSRY+SNPGRDHWT VKNILKY  R ++YMLVY +KDLILTGY
Sbjct: 1112 MYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGY 1171

[Close]

BLAST of Cmc07g0189841 vs. NCBI nr
Match: TYK06159.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 541.6 bits (1394), Expect = 5.1e-150
Identity = 282/355 (79.44%), Postives = 291/355 (81.97%), Query Frame = 0


Query: 1   MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ 60
           MNDVDCDQWIKAIDLKME MYSN  WTLVDQ ++V PIGC+WIYKRKRDQAGKVQTFKA+
Sbjct: 379 MNDVDCDQWIKAIDLKMESMYSNSVWTLVDQLSEVRPIGCRWIYKRKRDQAGKVQTFKAR 438

Query: 61  LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKN------------ 120
           LVAKGYTQKEGI YEETFSPV MIKSIRILLSIATFYDYEIW MDVK             
Sbjct: 439 LVAKGYTQKEGIDYEETFSPVTMIKSIRILLSIATFYDYEIWHMDVKTAFLNGNLEESIY 498

Query: 121 -----------------------KRIINSTVAFLVLYVDDILLIGNDVGHLTDIKKWLAT 180
                                  KRIINS VAFLVLYVDDILLIGNDVGHLTDIK+WLAT
Sbjct: 499 MVQSEGFIQKGQEQKNVDEPCVYKRIINSNVAFLVLYVDDILLIGNDVGHLTDIKEWLAT 558

Query: 181 QFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMHNSKKGLLSYRYGIHL 240
           QFQM DL NA YV GIQIVRNRKNKTLA+SQTSYIDKMLSRYKM NSKKGLL YRYGIHL
Sbjct: 559 QFQMNDLENALYVPGIQIVRNRKNKTLAISQTSYIDKMLSRYKMQNSKKGLLPYRYGIHL 618

Query: 241 SKEQCSKTPQEVEDMSNIPYASTVGSLMYAMLYTRSDMYYSVGIVSRYKSNPGRDHWTTV 300
           SKEQC KTPQEVEDMSNIPYAS VGSLM+AML TR D+ YSV IVSRY+SNPGRDHWTTV
Sbjct: 619 SKEQCPKTPQEVEDMSNIPYASAVGSLMHAMLCTRPDICYSVEIVSRYQSNPGRDHWTTV 678

Query: 301 KNILKYFIRKKDYMLVYSSKDLILTGYTDFNFQTDKDARKSTSGLVFTLNGGAVV 321
           KNILKY  R KDYMLVY SKDLILTGYTD NFQTDKDARKSTS  VFTLNGGAVV
Sbjct: 679 KNILKYLRRTKDYMLVYGSKDLILTGYTDSNFQTDKDARKSTSRSVFTLNGGAVV 733

[Close]

BLAST of Cmc07g0189841 vs. NCBI nr
Match: KAA0025729.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 539.7 bits (1389), Expect = 1.9e-149
Identity = 281/355 (79.15%), Postives = 290/355 (81.69%), Query Frame = 0


Query: 1   MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ 60
           MNDVDCDQWIKAIDLKME MYSN  WTLVDQ ++V PIGC+WIYKRKRDQAGKVQTFKA+
Sbjct: 399 MNDVDCDQWIKAIDLKMESMYSNSVWTLVDQLSEVRPIGCRWIYKRKRDQAGKVQTFKAR 458

Query: 61  LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKN------------ 120
           LVAKGYTQ EGI YEETFSPV MIKSIRILLSIATFYDYEIW MDVK             
Sbjct: 459 LVAKGYTQNEGIDYEETFSPVTMIKSIRILLSIATFYDYEIWHMDVKTAFLNGNLEESIY 518

Query: 121 -----------------------KRIINSTVAFLVLYVDDILLIGNDVGHLTDIKKWLAT 180
                                  KRIINS VAFLVLYVDDILLIGNDVGHLTDIK+WLAT
Sbjct: 519 MVQSEGFIQKGQEQKNVDEPCVYKRIINSNVAFLVLYVDDILLIGNDVGHLTDIKEWLAT 578

Query: 181 QFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMHNSKKGLLSYRYGIHL 240
           QFQM DL NA YV GIQIVRNRKNKTLA+SQTSYIDKMLSRYKM NSKKGLL YRYGIHL
Sbjct: 579 QFQMNDLENALYVPGIQIVRNRKNKTLAISQTSYIDKMLSRYKMQNSKKGLLPYRYGIHL 638

Query: 241 SKEQCSKTPQEVEDMSNIPYASTVGSLMYAMLYTRSDMYYSVGIVSRYKSNPGRDHWTTV 300
           SKEQC KTPQEVEDMSNIPYAS VGSLM+AML TR D+ YSV IVSRY+SNPGRDHWTTV
Sbjct: 639 SKEQCPKTPQEVEDMSNIPYASAVGSLMHAMLCTRPDICYSVEIVSRYQSNPGRDHWTTV 698

Query: 301 KNILKYFIRKKDYMLVYSSKDLILTGYTDFNFQTDKDARKSTSGLVFTLNGGAVV 321
           KNILKY  R KDYMLVY SKDLILTGYTD NFQTDKDARKSTS  VFTLNGGAVV
Sbjct: 699 KNILKYLRRTKDYMLVYGSKDLILTGYTDSNFQTDKDARKSTSRSVFTLNGGAVV 753

[Close]

BLAST of Cmc07g0189841 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.9e-68
Identity = 150/410 (36.59%), Postives = 218/410 (53.17%), Query Frame = 0


Query: 7    DQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQLVAKGY 66
            +Q +KA+  +ME +  N  + LV+      P+ CKW++K K+D   K+  +KA+LV KG+
Sbjct: 824  NQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGF 883

Query: 67   TQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKN------------------ 126
             QK+GI ++E FSPV  + SIR +LS+A   D E+ Q+DVK                   
Sbjct: 884  EQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEG 943

Query: 127  ---------------------------------------------------KRIINSTVA 186
                                                               KR   +   
Sbjct: 944  FEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFI 1003

Query: 187  FLVLYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQT 246
             L+LYVDD+L++G D G +  +K  L+  F MKDLG AQ +LG++IVR R ++ L +SQ 
Sbjct: 1004 ILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQE 1063

Query: 247  SYIDKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSLMYAML 306
             YI+++L R+ M N+K         + LSK+ C  T +E  +M+ +PY+S VGSLMYAM+
Sbjct: 1064 KYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMV 1123

Query: 307  YTRSDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYMLVYSSKDLILTGYTDFNF 348
             TR D+ ++VG+VSR+  NPG++HW  VK IL+Y        L +   D IL GYTD + 
Sbjct: 1124 CTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADM 1183

[Close]

BLAST of Cmc07g0189841 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 169.1 bits (427), Expect = 8.9e-41
Identity = 119/420 (28.33%), Postives = 199/420 (47.38%), Query Frame = 0


Query: 5    DCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQLVAK 64
            D   W +AI+ ++     N  WT+  +  + N +  +W++  K ++ G    +KA+LVA+
Sbjct: 902  DKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVAR 961

Query: 65   GYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVK----------------- 124
            G+TQK  I YEETF+PVA I S R +LS+   Y+ ++ QMDVK                 
Sbjct: 962  GFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLP 1021

Query: 125  -------------NKRI-----------------------INSTV--------------- 184
                         NK I                       +NS+V               
Sbjct: 1022 QGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINEN 1081

Query: 185  AFLVLYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQ 244
             +++LYVDD+++   D+  + + K++L  +F+M DL   ++ +GI+I    +   + +SQ
Sbjct: 1082 IYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRI--EMQEDKIYLSQ 1141

Query: 245  TSYIDKMLSRYKMHN----SKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSL 304
            ++Y+ K+LS++ M N    S        Y +  S E C           N P  S +G L
Sbjct: 1142 SAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDC-----------NTPCRSLIGCL 1201

Query: 305  MYAMLYTRSDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYMLVYSSK---DLIL 349
            MY ML TR D+  +V I+SRY S    + W  +K +L+Y     D  L++      +  +
Sbjct: 1202 MYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKI 1261

[Close]

BLAST of Cmc07g0189841 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.7e-36
Identity = 117/411 (28.47%), Postives = 180/411 (43.80%), Query Frame = 0


Query: 7    DQWIKAIDLKMELMYSNIFWTLV-DQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQLVAKG 66
            D+W +A+  ++     N  W LV      V  +GC+WI+ +K +  G +  +KA+LVAKG
Sbjct: 949  DRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKG 1008

Query: 67   YTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKNKRI-------------- 126
            Y Q+ G+ Y ETFSPV    SIRI+L +A    + I Q+DV N  +              
Sbjct: 1009 YNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPP 1068

Query: 127  -----------------------------------------INS-------------TVA 186
                                                     +NS             ++ 
Sbjct: 1069 GFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSII 1128

Query: 187  FLVLYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQT 246
            ++++YVDDIL+ GND   L      L+ +F +K+  +  Y LGI+    R  + L +SQ 
Sbjct: 1129 YMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIE--AKRVPQGLHLSQR 1188

Query: 247  SYIDKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSLMYAML 306
             Y   +L+R  M  +K           L+    +K P   E      Y   VGSL Y + 
Sbjct: 1189 RYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE------YRGIVGSLQY-LA 1248

Query: 307  YTRSDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDY-MLVYSSKDLILTGYTDFN 348
            +TR D+ Y+V  +S+Y   P  DHW  +K +L+Y     D+ + +     L L  Y+D +
Sbjct: 1249 FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDAD 1308

[Close]

BLAST of Cmc07g0189841 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.0e-33
Identity = 116/411 (28.22%), Postives = 179/411 (43.55%), Query Frame = 0


Query: 7    DQWIKAIDLKMELMYSNIFWTLV-DQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQLVAKG 66
            ++W  A+  ++     N  W LV    + V  +GC+WI+ +K +  G +  +KA+LVAKG
Sbjct: 966  ERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKG 1025

Query: 67   YTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKNKRI-------------- 126
            Y Q+ G+ Y ETFSPV    SIRI+L +A    + I Q+DV N  +              
Sbjct: 1026 YNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPP 1085

Query: 127  -----------------------------------------INS-------------TVA 186
                                                     +NS             ++ 
Sbjct: 1086 GFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIV 1145

Query: 187  FLVLYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQT 246
            ++++YVDDIL+ GND   L +    L+ +F +KD     Y LGI+    R    L +SQ 
Sbjct: 1146 YMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIE--AKRVPTGLHLSQR 1205

Query: 247  SYIDKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSLMYAML 306
             YI  +L+R  M  +K           LS    +K     E      Y   VGSL Y + 
Sbjct: 1206 RYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTE------YRGIVGSLQY-LA 1265

Query: 307  YTRSDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDY-MLVYSSKDLILTGYTDFN 348
            +TR D+ Y+V  +S++   P  +H   +K IL+Y     ++ + +     L L  Y+D +
Sbjct: 1266 FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDAD 1325

[Close]

BLAST of Cmc07g0189841 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-22
Identity = 55/130 (42.31%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 220 MSNIPYASTVGSLMYAMLYTRSDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYM 279
           M N+PY S VG++MY M+ TR D+  +VG++S++ S+P   HW  +K +L+Y    + Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 280 LVYSSKDLI-LTGYTDFNFQTDKDARKSTSGLVFTLNGGAVVWRSIKQSCIVDSTMEAEY 339
           L ++      L GY+D ++  D ++R+STSG +F LNGG V WRS KQ  +  S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 340 VAVCEAAKEA 349
           +A+ EA +EA
Sbjct: 121 MALSEATQEA 130

[Close]

BLAST of Cmc07g0189841 vs. ExPASy TrEMBL
Match: A0A5D3D523 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001800 PE=4 SV=1)

HSP 1 Score: 646.0 bits (1665), Expect = 9.2e-182
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0


Query: 1   MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ 60
           MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ
Sbjct: 450 MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ 509

Query: 61  LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKNKRIINSTVAFLV 120
           LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKNKRIINSTVAFLV
Sbjct: 510 LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKNKRIINSTVAFLV 569

Query: 121 LYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYI 180
           LYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYI
Sbjct: 570 LYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYI 629

Query: 181 DKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSLMYAMLYTR 240
           DKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSLMYAMLYTR
Sbjct: 630 DKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSLMYAMLYTR 689

Query: 241 SDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYMLVYSSKDLILTGYTDFNFQTD 300
           SDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYMLVYSSKDLILTGYTDFNFQTD
Sbjct: 690 SDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYMLVYSSKDLILTGYTDFNFQTD 749

Query: 301 KDARKSTSGLVFTLNGGAVV 321
           KDARKSTSGLVFTLNGGAVV
Sbjct: 750 KDARKSTSGLVFTLNGGAVV 769

[Close]

BLAST of Cmc07g0189841 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 582.4 bits (1500), Expect = 1.3e-162
Identity = 310/416 (74.52%), Postives = 319/416 (76.68%), Query Frame = 0


Query: 1   MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ 60
           MNDVD DQWIKA+DL+ME MYSN  WTLVDQ NDV PIGCKWIYKRKRDQAGKVQTFKA+
Sbjct: 237 MNDVDRDQWIKAMDLEMESMYSNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 296

Query: 61  LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKN------------ 120
           LVAKGYTQKEGI YEE FS  AMIKSIRILLSIATFYDYEIWQMDVK             
Sbjct: 297 LVAKGYTQKEGIDYEEVFS-FAMIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIY 356

Query: 121 --------------------------------------------------------KRII 180
                                                                   KRI+
Sbjct: 357 MVQPERFIQKGQEQKICKLQKSIYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIM 416

Query: 181 NSTVAFLVLYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTL 240
           NSTVAFLVLYVDDILLIGNDVGHL DIKKWLA QFQMKDLGNAQYVLG+QIVRNRKNKTL
Sbjct: 417 NSTVAFLVLYVDDILLIGNDVGHLADIKKWLAMQFQMKDLGNAQYVLGVQIVRNRKNKTL 476

Query: 241 AMSQTSYIDKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSL 300
           AMSQTSYIDKMLSRYKMHNSKKGLL YRYGIHLSKEQC KTPQEVEDMSNIPYAS VGSL
Sbjct: 477 AMSQTSYIDKMLSRYKMHNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSL 536

Query: 301 MYAMLYTRSDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYMLVYSSKDLILTGY 349
           MY ML TR ++ YSVGIVSR +S PGRDHWTTVKNILKY  R KDYMLVY SKDLILTGY
Sbjct: 537 MYVMLCTRPNICYSVGIVSRCQSKPGRDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGY 596

[Close]

BLAST of Cmc07g0189841 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 553.9 bits (1426), Expect = 4.8e-154
Identity = 288/416 (69.23%), Postives = 315/416 (75.72%), Query Frame = 0


Query: 1    MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ 60
            MNDVD DQWIKA++L+ME MY N  WTLVD  +DV PIGCKWIYKRKRDQAGKVQTFKA+
Sbjct: 812  MNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKAR 871

Query: 61   LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKN------------ 120
            LVAKGYTQKEG+ YEETFSPVAM+KSIRILLSIATFY+YEIWQMDVK             
Sbjct: 872  LVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIY 931

Query: 121  --------------------------------------------------------KRII 180
                                                                    K+I+
Sbjct: 932  MVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIV 991

Query: 181  NSTVAFLVLYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTL 240
            NS VAFL+LYVDDILLIGNDV +LTD+KKWL TQFQMKDLG AQY+LGIQIVRNRKNKTL
Sbjct: 992  NSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTL 1051

Query: 241  AMSQTSYIDKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSL 300
            AMSQ SYIDK+LSRYKM NSKKG L +R+GIHLSKEQC KTPQEVEDM NIPY+S VGSL
Sbjct: 1052 AMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSL 1111

Query: 301  MYAMLYTRSDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYMLVYSSKDLILTGY 349
            MYAML TR D+ YSVGIVSRY+SNPGRDHWT VKNILKY  R ++YMLVY +KDLILTGY
Sbjct: 1112 MYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGY 1171

[Close]

BLAST of Cmc07g0189841 vs. ExPASy TrEMBL
Match: A0A5D3C701 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00080 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 2.4e-150
Identity = 282/355 (79.44%), Postives = 291/355 (81.97%), Query Frame = 0


Query: 1   MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ 60
           MNDVDCDQWIKAIDLKME MYSN  WTLVDQ ++V PIGC+WIYKRKRDQAGKVQTFKA+
Sbjct: 379 MNDVDCDQWIKAIDLKMESMYSNSVWTLVDQLSEVRPIGCRWIYKRKRDQAGKVQTFKAR 438

Query: 61  LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKN------------ 120
           LVAKGYTQKEGI YEETFSPV MIKSIRILLSIATFYDYEIW MDVK             
Sbjct: 439 LVAKGYTQKEGIDYEETFSPVTMIKSIRILLSIATFYDYEIWHMDVKTAFLNGNLEESIY 498

Query: 121 -----------------------KRIINSTVAFLVLYVDDILLIGNDVGHLTDIKKWLAT 180
                                  KRIINS VAFLVLYVDDILLIGNDVGHLTDIK+WLAT
Sbjct: 499 MVQSEGFIQKGQEQKNVDEPCVYKRIINSNVAFLVLYVDDILLIGNDVGHLTDIKEWLAT 558

Query: 181 QFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMHNSKKGLLSYRYGIHL 240
           QFQM DL NA YV GIQIVRNRKNKTLA+SQTSYIDKMLSRYKM NSKKGLL YRYGIHL
Sbjct: 559 QFQMNDLENALYVPGIQIVRNRKNKTLAISQTSYIDKMLSRYKMQNSKKGLLPYRYGIHL 618

Query: 241 SKEQCSKTPQEVEDMSNIPYASTVGSLMYAMLYTRSDMYYSVGIVSRYKSNPGRDHWTTV 300
           SKEQC KTPQEVEDMSNIPYAS VGSLM+AML TR D+ YSV IVSRY+SNPGRDHWTTV
Sbjct: 619 SKEQCPKTPQEVEDMSNIPYASAVGSLMHAMLCTRPDICYSVEIVSRYQSNPGRDHWTTV 678

Query: 301 KNILKYFIRKKDYMLVYSSKDLILTGYTDFNFQTDKDARKSTSGLVFTLNGGAVV 321
           KNILKY  R KDYMLVY SKDLILTGYTD NFQTDKDARKSTS  VFTLNGGAVV
Sbjct: 679 KNILKYLRRTKDYMLVYGSKDLILTGYTDSNFQTDKDARKSTSRSVFTLNGGAVV 733

[Close]

BLAST of Cmc07g0189841 vs. ExPASy TrEMBL
Match: A0A5A7SKC9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00100 PE=4 SV=1)

HSP 1 Score: 539.7 bits (1389), Expect = 9.3e-150
Identity = 281/355 (79.15%), Postives = 290/355 (81.69%), Query Frame = 0


Query: 1   MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ 60
           MNDVDCDQWIKAIDLKME MYSN  WTLVDQ ++V PIGC+WIYKRKRDQAGKVQTFKA+
Sbjct: 399 MNDVDCDQWIKAIDLKMESMYSNSVWTLVDQLSEVRPIGCRWIYKRKRDQAGKVQTFKAR 458

Query: 61  LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKN------------ 120
           LVAKGYTQ EGI YEETFSPV MIKSIRILLSIATFYDYEIW MDVK             
Sbjct: 459 LVAKGYTQNEGIDYEETFSPVTMIKSIRILLSIATFYDYEIWHMDVKTAFLNGNLEESIY 518

Query: 121 -----------------------KRIINSTVAFLVLYVDDILLIGNDVGHLTDIKKWLAT 180
                                  KRIINS VAFLVLYVDDILLIGNDVGHLTDIK+WLAT
Sbjct: 519 MVQSEGFIQKGQEQKNVDEPCVYKRIINSNVAFLVLYVDDILLIGNDVGHLTDIKEWLAT 578

Query: 181 QFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMHNSKKGLLSYRYGIHL 240
           QFQM DL NA YV GIQIVRNRKNKTLA+SQTSYIDKMLSRYKM NSKKGLL YRYGIHL
Sbjct: 579 QFQMNDLENALYVPGIQIVRNRKNKTLAISQTSYIDKMLSRYKMQNSKKGLLPYRYGIHL 638

Query: 241 SKEQCSKTPQEVEDMSNIPYASTVGSLMYAMLYTRSDMYYSVGIVSRYKSNPGRDHWTTV 300
           SKEQC KTPQEVEDMSNIPYAS VGSLM+AML TR D+ YSV IVSRY+SNPGRDHWTTV
Sbjct: 639 SKEQCPKTPQEVEDMSNIPYASAVGSLMHAMLCTRPDICYSVEIVSRYQSNPGRDHWTTV 698

Query: 301 KNILKYFIRKKDYMLVYSSKDLILTGYTDFNFQTDKDARKSTSGLVFTLNGGAVV 321
           KNILKY  R KDYMLVY SKDLILTGYTD NFQTDKDARKSTS  VFTLNGGAVV
Sbjct: 699 KNILKYLRRTKDYMLVYGSKDLILTGYTDSNFQTDKDARKSTSRSVFTLNGGAVV 753

[Close]

BLAST of Cmc07g0189841 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 146.4 bits (368), Expect = 4.4e-35
Identity = 110/412 (26.70%), Postives = 183/412 (44.42%), Query Frame = 0


Query: 9   WIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQLVAKGYTQ 68
           W  A+D ++  M +   W +     +  PIGCKW+YK K +  G ++ +KA+LVAKGYTQ
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 69  KEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKNKRI----------------- 128
           +EGI + ETFSPV  + S++++L+I+  Y++ + Q+D+ N  +                 
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217

Query: 129 ------------------------------------------------------INSTVA 188
                                                                 I +T+ 
Sbjct: 218 ARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLF 277

Query: 189 FLVL-YVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQ 248
             VL YVDDI++  N+   + ++K  L + F+++DLG  +Y LG++I R+     + + Q
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAG--INICQ 337

Query: 249 TSYIDKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSLMYAM 308
             Y   +L    +   K   +     +  S           + +    Y   +G LMY  
Sbjct: 338 RKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGG------DFVDAKAYRRLIGRLMYLQ 397

Query: 309 LYTRSDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDYMLVYSSK-DLILTGYTDF 348
           + TR D+ ++V  +S++   P   H   V  IL Y        L YSS+ ++ L  ++D 
Sbjct: 398 I-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDA 457

[Close]

BLAST of Cmc07g0189841 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 5.1e-15
Identity = 70/231 (30.30%), Postives = 115/231 (49.78%), Query Frame = 0


Query: 118 FLVLYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQT 177
           +L+LYVDDILL G+    L  +   L++ F MKDLG   Y LGIQI  +     L +SQT
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQT 61

Query: 178 SYIDKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSLMYAML 237
            Y +++L+   M + K   +S    + L+    S +  +  D S+  + S VG+L Y  L
Sbjct: 62  KYAEQILNNAGMLDCKP--MSTPLPLKLNS---SVSTAKYPDPSD--FRSIVGALQYLTL 121

Query: 238 YTRSDMYYSVGIVSRYKSNPGRDHWTTVKNILKYFIRKKDY-MLVYSSKDLILTGYTDFN 297
            TR D+ Y+V IV +    P    +  +K +L+Y      + + ++ +  L +  + D +
Sbjct: 122 -TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSD 181

Query: 298 FQTDKDARKSTSGLVFTLNGGAVVWRSIKQSCIVDSTMEAEYVAVCEAAKE 348
           +      R+ST+G    L    + W + +Q  +  S+ E EY A+   A E
Sbjct: 182 WAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAE 222

[Close]

BLAST of Cmc07g0189841 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-14
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 9   WIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQLVAKGYTQ 68
           W +A+  +++ +  N  W LV    + N +GCKW++K K    G +   KA+LVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 69  KEGIYYEETFSPVAMIKSIRILLSIA 95
           +EGIY+ ET+SPV    +IR +L++A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc07g0189841 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064270.1	1.9e-181	100.00	gag/pol protein [Cucumis melo var. makuwa] >TYK18638.1 gag/pol protein [Cucumis ...	[more]
TYK03644.1	2.6e-162	74.52	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	9.8e-154	69.23	gag/pol protein, partial [Bryonia dioica]	[more]
TYK06159.1	5.1e-150	79.44	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025729.1	1.9e-149	79.15	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0189841 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.9e-68	36.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	8.9e-41	28.33	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	8.7e-36	28.47	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.0e-33	28.22	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0CV72	1.1e-22	42.31	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc07g0189841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D523	9.2e-182	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0018...	[more]
A0A5D3BX45	1.3e-162	74.52	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]
E2GK51	4.8e-154	69.23	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5D3C701	2.4e-150	79.44	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G0008...	[more]
A0A5A7SKC9	9.3e-150	79.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G0010...	[more]

BLAST of Cmc07g0189841 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.4e-35	26.70	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	5.1e-15	30.30	DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	1.5e-14	40.70	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 119..192 e-value: 1.2E-13 score: 51.3 coord: 25..108 e-value: 1.6E-22 score: 80.3
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 6..109 coord: 118..286
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 290..348 e-value: 4.79553E-24 score: 94.0721
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 23..346

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0189841.1	Cmc07g0189841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding