Cmc07g0189681 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0189681
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr07: 8415263 .. 8416011 (+)
RNA-Seq Expression	Cmc07g0189681
Synteny	Cmc07g0189681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGATTCCTATTAAACCAATACACCAACCTGTTTGACACTCCAAAAGCCTTACCATCTAAGAGACTCATAGACCATCGTATCCTCACATTACCAGAACAAAAACCTATCAATGTACGACCATATAAGTACGACCATGCTCAAAAGGAAGAAATAGAGAAACTTGTTGCAGAAATGCTACAGGCAGGGATAATCAAACCCAACCATAGTCCTTTCTCAAGTCCTATGCTGCTGGTAAAGAAAAAAGATGGTGGATGGAGGTTTTGTGTGGATTACCAAAAATTGAACAAAATCACAATAGCTGATAAATTCCTCATACCCGTGATTGAAGAATTGCTAGACGAACTACACGGGGCCACTATTTTTTCAAAACTAGATCTAAAATCTGGTTATCACCAGATTAGAATGAAAGATGAGGATATTGAGAAAACTGCGTTTCGGACACACGAGGGCCACTATGAATTCCTAGTCATGCCATTTGGGTTGATGAATACCCCTGCCACTTTCCAATCTCTCATGAACCAGGTATTTAAACCCTTCCTAAGACGTTGTGTACACTGGTTTTTTTTTATGATATACTCATTTACAGTTTGGACATAACTGATCATGAGAAGCACTTAGGAATAGTGTTTGCAATATTGAGGGATAACCAGTTGTATGCTAATCGGAAGAAGTGTGTGTTTGCCCATTCCCAAATACAATATTTAGGCCATAACATATCCAAAAAAGGGATGGAAGTAGATTAG

mRNA sequence

ATGATCAGATTCCTATTAAACCAATACACCAACCTGTTTGACACTCCAAAAGCCTTACCATCTAAGAGACTCATAGACCATCGTATCCTCACATTACCAGAACAAAAACCTATCAATGTACGACCATATAAGTACGACCATGCTCAAAAGGAAGAAATAGAGAAACTTGTTGCAGAAATGCTACAGGCAGGGATAATCAAACCCAACCATAGTCCTTTCTCAAGTCCTATGCTGCTGGTAAAGAAAAAAGATGGTGGATGGAGGTTTTGTGTGGATTACCAAAAATTGAACAAAATCACAATAGCTGATAAATTCCTCATACCCGTGATTGAAGAATTGCTAGACGAACTACACGGGGCCACTATTTTTTCAAAACTAGATCTAAAATCTGGTTATCACCAGATTAGAATGAAAGATGAGGATATTGAGAAAACTGCGTTTCGGACACACGAGGGCCACTATGAATTCCTAGTCATGCCATTTGGGTTGATGAATACCCCTGCCACTTTCCAATCTCTCATGAACCAGCACTTAGGAATAGTGTTTGCAATATTGAGGGATAACCAGTTGTATGCTAATCGGAAGAAGTGTGTGTTTGCCCATTCCCAAATACAATATTTAGGCCATAACATATCCAAAAAAGGGATGGAAGTAGATTAG

Coding sequence (CDS)

ATGATCAGATTCCTATTAAACCAATACACCAACCTGTTTGACACTCCAAAAGCCTTACCATCTAAGAGACTCATAGACCATCGTATCCTCACATTACCAGAACAAAAACCTATCAATGTACGACCATATAAGTACGACCATGCTCAAAAGGAAGAAATAGAGAAACTTGTTGCAGAAATGCTACAGGCAGGGATAATCAAACCCAACCATAGTCCTTTCTCAAGTCCTATGCTGCTGGTAAAGAAAAAAGATGGTGGATGGAGGTTTTGTGTGGATTACCAAAAATTGAACAAAATCACAATAGCTGATAAATTCCTCATACCCGTGATTGAAGAATTGCTAGACGAACTACACGGGGCCACTATTTTTTCAAAACTAGATCTAAAATCTGGTTATCACCAGATTAGAATGAAAGATGAGGATATTGAGAAAACTGCGTTTCGGACACACGAGGGCCACTATGAATTCCTAGTCATGCCATTTGGGTTGATGAATACCCCTGCCACTTTCCAATCTCTCATGAACCAGCACTTAGGAATAGTGTTTGCAATATTGAGGGATAACCAGTTGTATGCTAATCGGAAGAAGTGTGTGTTTGCCCATTCCCAAATACAATATTTAGGCCATAACATATCCAAAAAAGGGATGGAAGTAGATTAG

Protein sequence

MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQHLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD

Homology

[Close]

BLAST of Cmc07g0189681 vs. NCBI nr
Match: KAA0065995.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28942.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 378.6 bits (971), Expect = 3.6e-101
Identity = 187/248 (75.40%), Postives = 201/248 (81.05%), Query Frame = 0


Query: 1   MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEM 60
           MI+FLLNQY+++FD P  LP KR +DHRI T+P QKPINVRPYKY H QKEEIEKLV EM
Sbjct: 454 MIQFLLNQYSDVFDIPTTLPPKRAVDHRIFTMPGQKPINVRPYKYGHQQKEEIEKLVTEM 513

Query: 61  LQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGA 120
           LQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY KLNKITIADKF IPVIEELLDELHGA
Sbjct: 514 LQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYGKLNKITIADKFPIPVIEELLDELHGA 573

Query: 121 TIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ---- 180
           T+FSKLDLKSGYHQIRMK+EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ    
Sbjct: 574 TVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKP 633

Query: 181 -------------------------HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNI 220
                                    HLG+VFAILRDNQLYANRKKCVFAHSQIQYLGH I
Sbjct: 634 FLRRCVLIFFDDILVYSSDITEHERHLGMVFAILRDNQLYANRKKCVFAHSQIQYLGHII 693

[Close]

BLAST of Cmc07g0189681 vs. NCBI nr
Match: TYK21035.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30523.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 374.8 bits (961), Expect = 5.1e-100
Identity = 185/248 (74.60%), Postives = 203/248 (81.85%), Query Frame = 0


Query: 1   MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEM 60
           MI+FLL+QY+++F++P  LP KR+IDHRILTLP QKPINVRPYKY H QKEEIEKLV EM
Sbjct: 559 MIQFLLHQYSDVFNSPTTLPPKRIIDHRILTLPGQKPINVRPYKYGHQQKEEIEKLVIEM 618

Query: 61  LQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGA 120
           LQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY+KLNKITIADKF IPVIEELLDELHGA
Sbjct: 619 LQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKITIADKFPIPVIEELLDELHGA 678

Query: 121 TIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ---- 180
           T+FSKLDLKSGYHQIRM++EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ    
Sbjct: 679 TVFSKLDLKSGYHQIRMREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKP 738

Query: 181 -------------------------HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNI 220
                                    HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH I
Sbjct: 739 FLRRCVLVFFDDILVYSSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVI 798

[Close]

BLAST of Cmc07g0189681 vs. NCBI nr
Match: KAA0046359.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 373.6 bits (958), Expect = 1.1e-99
Identity = 185/248 (74.60%), Postives = 202/248 (81.45%), Query Frame = 0


Query: 1   MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEM 60
           MI+FLL+QY+++F++P  LP KR+IDHRILTLP QKPINVRPYKY H QKEEIEKLV EM
Sbjct: 559 MIQFLLHQYSDVFNSPTTLPPKRIIDHRILTLPGQKPINVRPYKYGHQQKEEIEKLVIEM 618

Query: 61  LQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGA 120
           LQ GII+P+HSPFSSP+LLVKK DGGWRFCVDY+KLNKITIADKF IPVIEELLDELHGA
Sbjct: 619 LQTGIIRPSHSPFSSPVLLVKKNDGGWRFCVDYRKLNKITIADKFPIPVIEELLDELHGA 678

Query: 121 TIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ---- 180
           T+FSKLDLKSGYHQIRMK+EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ    
Sbjct: 679 TVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKP 738

Query: 181 -------------------------HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNI 220
                                    HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH I
Sbjct: 739 FLRRCVLVFFDDILVYSSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVI 798

[Close]

BLAST of Cmc07g0189681 vs. NCBI nr
Match: KAA0059481.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 373.2 bits (957), Expect = 1.5e-99
Identity = 185/248 (74.60%), Postives = 202/248 (81.45%), Query Frame = 0


Query: 1   MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEM 60
           MI+FLL+QY+++F++P  LP KR+IDHRILTLP QKPINVRPYKY H QKEEIEKLV EM
Sbjct: 559 MIQFLLHQYSDVFNSPTTLPPKRIIDHRILTLPGQKPINVRPYKYGHQQKEEIEKLVIEM 618

Query: 61  LQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGA 120
           LQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY+KLNKITIADKF IPVIEELLDELHGA
Sbjct: 619 LQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKITIADKFPIPVIEELLDELHGA 678

Query: 121 TIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ---- 180
           T+FSKLDLKSGYHQIRMK+EDIEKTAFRTHEGHYEF+VMPFGL N PATFQS MNQ    
Sbjct: 679 TVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSHMNQVFKP 738

Query: 181 -------------------------HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNI 220
                                    HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH I
Sbjct: 739 FLRRCVLVFFDDILVYSSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVI 798

[Close]

BLAST of Cmc07g0189681 vs. NCBI nr
Match: TYK28944.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 372.5 bits (955), Expect = 2.5e-99
Identity = 185/248 (74.60%), Postives = 201/248 (81.05%), Query Frame = 0


Query: 1   MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEM 60
           MI+FLL+QY+++F +P  LP KR IDHRILTLP QKPINVRPYKY H QKEEIEKLV EM
Sbjct: 559 MIQFLLHQYSDVFKSPTTLPPKRSIDHRILTLPGQKPINVRPYKYGHQQKEEIEKLVIEM 618

Query: 61  LQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGA 120
           LQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY+KLNKITIADKF IPVIEELLDELHGA
Sbjct: 619 LQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKITIADKFPIPVIEELLDELHGA 678

Query: 121 TIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ---- 180
           T+FSKLDLKSGYHQIRM++EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ    
Sbjct: 679 TVFSKLDLKSGYHQIRMREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKP 738

Query: 181 -------------------------HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNI 220
                                    HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH I
Sbjct: 739 FLRRCVLVFFDDILVYSSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVI 798

[Close]

BLAST of Cmc07g0189681 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 156.0 bits (393), Expect = 4.9e-37
Identity = 85/214 (39.72%), Postives = 118/214 (55.14%), Query Frame = 0


Query: 25  IDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKD 84
           + H I   P  +   ++PY      ++EI K+V ++L    I P+ SP SSP++LV KKD
Sbjct: 584 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 643

Query: 85  GGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEK 144
           G +R CVDY+ LNK TI+D F +P I+ LL  +  A IF+ LDL SGYHQI M+ +D  K
Sbjct: 644 GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYK 703

Query: 145 TAFRTHEGHYEFLVMPFGLMNTPATFQSLMN---------------------------QH 204
           TAF T  G YE+ VMPFGL+N P+TF   M                            +H
Sbjct: 704 TAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEHWKH 763

Query: 205 LGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNI 212
           L  V   L++  L   +KKC FA  + ++LG++I
Sbjct: 764 LDTVLERLKNENLIVKKKKCKFASEETEFLGYSI 797

[Close]

BLAST of Cmc07g0189681 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 156.0 bits (393), Expect = 4.9e-37
Identity = 85/214 (39.72%), Postives = 118/214 (55.14%), Query Frame = 0


Query: 25  IDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKD 84
           + H I   P  +   ++PY      ++EI K+V ++L    I P+ SP SSP++LV KKD
Sbjct: 610 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 669

Query: 85  GGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEK 144
           G +R CVDY+ LNK TI+D F +P I+ LL  +  A IF+ LDL SGYHQI M+ +D  K
Sbjct: 670 GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYK 729

Query: 145 TAFRTHEGHYEFLVMPFGLMNTPATFQSLMN---------------------------QH 204
           TAF T  G YE+ VMPFGL+N P+TF   M                            +H
Sbjct: 730 TAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEHWKH 789

Query: 205 LGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNI 212
           L  V   L++  L   +KKC FA  + ++LG++I
Sbjct: 790 LDTVLERLKNENLIVKKKKCKFASEETEFLGYSI 823

[Close]

BLAST of Cmc07g0189681 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.6e-35
Identity = 89/251 (35.46%), Postives = 129/251 (51.39%), Query Frame = 0


Query: 2   IRFLLNQYTNL-FDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEM 61
           ++ LLN++ NL +   + L     I H +L      PI  + Y      + E+E  V EM
Sbjct: 171 LKGLLNKFRNLEYKEGEKLTFTNTIKH-VLNTTHNSPIYSKQYPLAQTHEIEVENQVQEM 230

Query: 62  LQAGIIKPNHSPFSSPMLLVKKKDGG-----WRFCVDYQKLNKITIADKFLIPVIEELLD 121
           L  G+I+ ++SP++SP  +V KK        +R  +DY+KLN+ITI D++ IP ++E+L 
Sbjct: 231 LNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILG 290

Query: 122 ELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMN 181
           +L     F+ +DL  G+HQI M +E I KTAF T  GHYE+L MPFGL N PATFQ  MN
Sbjct: 291 KLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMN 350

Query: 182 --------------------------QHLG---IVFAILRDNQLYANRKKCVFAHSQIQY 218
                                     +HL    +VF  L D  L     KC F   +  +
Sbjct: 351 NILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANF 410

[Close]

BLAST of Cmc07g0189681 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.0e-35
Identity = 86/253 (33.99%), Postives = 133/253 (52.57%), Query Frame = 0


Query: 1   MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEM 60
           ++  LL ++  +F+ P +  S        +    Q PI  + Y Y    + E+E+ + E+
Sbjct: 87  ILNSLLGEFPRIFEPPLSGMSVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQIDEL 146

Query: 61  LQAGIIKPNHSPFSSPMLLVKKK-----DGGWRFCVDYQKLNKITIADKFLIPVIEELLD 120
           LQ GII+P++SP++SP+ +V KK     +  +R  VD+++LN +TI D + IP I   L 
Sbjct: 147 LQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLA 206

Query: 121 ELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQ---- 180
            L  A  F+ LDL SG+HQI MK+ DI KTAF T  G YEFL +PFGL N PA FQ    
Sbjct: 207 SLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMID 266

Query: 181 SLMNQHLG-------------------------IVFAILRDNQLYANRKKCVFAHSQIQY 220
            ++ +H+G                         +V A L    L  N +K  F  +Q+++
Sbjct: 267 DILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEF 326

[Close]

BLAST of Cmc07g0189681 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 77/209 (36.84%), Postives = 111/209 (53.11%), Query Frame = 0


Query: 43  YKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGG-----WRFCVDYQKLN 102
           Y Y  A ++E+E  + +ML  GII+ ++SP++SP+ +V KK        +R  +DY+KLN
Sbjct: 213 YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLN 272

Query: 103 KITIADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFL 162
           +IT+ D+  IP ++E+L +L     F+ +DL  G+HQI M  E + KTAF T  GHYE+L
Sbjct: 273 EITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYL 332

Query: 163 VMPFGLMNTPATFQSLMN-----------------------------QHLGIVFAILRDN 218
            MPFGL N PATFQ  MN                             Q LG+VF  L   
Sbjct: 333 RMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKA 392

[Close]

BLAST of Cmc07g0189681 vs. ExPASy TrEMBL
Match: A0A5A7VJU2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00290 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.7e-101
Identity = 187/248 (75.40%), Postives = 201/248 (81.05%), Query Frame = 0


Query: 1   MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEM 60
           MI+FLLNQY+++FD P  LP KR +DHRI T+P QKPINVRPYKY H QKEEIEKLV EM
Sbjct: 454 MIQFLLNQYSDVFDIPTTLPPKRAVDHRIFTMPGQKPINVRPYKYGHQQKEEIEKLVTEM 513

Query: 61  LQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGA 120
           LQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY KLNKITIADKF IPVIEELLDELHGA
Sbjct: 514 LQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYGKLNKITIADKFPIPVIEELLDELHGA 573

Query: 121 TIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ---- 180
           T+FSKLDLKSGYHQIRMK+EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ    
Sbjct: 574 TVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKP 633

Query: 181 -------------------------HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNI 220
                                    HLG+VFAILRDNQLYANRKKCVFAHSQIQYLGH I
Sbjct: 634 FLRRCVLIFFDDILVYSSDITEHERHLGMVFAILRDNQLYANRKKCVFAHSQIQYLGHII 693

[Close]

BLAST of Cmc07g0189681 vs. ExPASy TrEMBL
Match: A0A5D3E325 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00690 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.5e-100
Identity = 185/248 (74.60%), Postives = 203/248 (81.85%), Query Frame = 0


Query: 1   MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEM 60
           MI+FLL+QY+++F++P  LP KR+IDHRILTLP QKPINVRPYKY H QKEEIEKLV EM
Sbjct: 559 MIQFLLHQYSDVFNSPTTLPPKRIIDHRILTLPGQKPINVRPYKYGHQQKEEIEKLVIEM 618

Query: 61  LQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGA 120
           LQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY+KLNKITIADKF IPVIEELLDELHGA
Sbjct: 619 LQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKITIADKFPIPVIEELLDELHGA 678

Query: 121 TIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ---- 180
           T+FSKLDLKSGYHQIRM++EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ    
Sbjct: 679 TVFSKLDLKSGYHQIRMREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKP 738

Query: 181 -------------------------HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNI 220
                                    HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH I
Sbjct: 739 FLRRCVLVFFDDILVYSSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVI 798

[Close]

BLAST of Cmc07g0189681 vs. ExPASy TrEMBL
Match: A0A5A7TYN3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00710 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.5e-100
Identity = 185/248 (74.60%), Postives = 202/248 (81.45%), Query Frame = 0


Query: 1   MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEM 60
           MI+FLL+QY+++F++P  LP KR+IDHRILTLP QKPINVRPYKY H QKEEIEKLV EM
Sbjct: 559 MIQFLLHQYSDVFNSPTTLPPKRIIDHRILTLPGQKPINVRPYKYGHQQKEEIEKLVIEM 618

Query: 61  LQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGA 120
           LQ GII+P+HSPFSSP+LLVKK DGGWRFCVDY+KLNKITIADKF IPVIEELLDELHGA
Sbjct: 619 LQTGIIRPSHSPFSSPVLLVKKNDGGWRFCVDYRKLNKITIADKFPIPVIEELLDELHGA 678

Query: 121 TIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ---- 180
           T+FSKLDLKSGYHQIRMK+EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ    
Sbjct: 679 TVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKP 738

Query: 181 -------------------------HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNI 220
                                    HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH I
Sbjct: 739 FLRRCVLVFFDDILVYSSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVI 798

[Close]

BLAST of Cmc07g0189681 vs. ExPASy TrEMBL
Match: A0A5A7V194 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G002120 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.2e-100
Identity = 185/248 (74.60%), Postives = 202/248 (81.45%), Query Frame = 0


Query: 1   MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEM 60
           MI+FLL+QY+++F++P  LP KR+IDHRILTLP QKPINVRPYKY H QKEEIEKLV EM
Sbjct: 559 MIQFLLHQYSDVFNSPTTLPPKRIIDHRILTLPGQKPINVRPYKYGHQQKEEIEKLVIEM 618

Query: 61  LQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGA 120
           LQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY+KLNKITIADKF IPVIEELLDELHGA
Sbjct: 619 LQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKITIADKFPIPVIEELLDELHGA 678

Query: 121 TIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ---- 180
           T+FSKLDLKSGYHQIRMK+EDIEKTAFRTHEGHYEF+VMPFGL N PATFQS MNQ    
Sbjct: 679 TVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSHMNQVFKP 738

Query: 181 -------------------------HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNI 220
                                    HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH I
Sbjct: 739 FLRRCVLVFFDDILVYSSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVI 798

[Close]

BLAST of Cmc07g0189681 vs. ExPASy TrEMBL
Match: A0A5D3BBH7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00100 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.2e-99
Identity = 185/248 (74.60%), Postives = 201/248 (81.05%), Query Frame = 0


Query: 1   MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEM 60
           MI+FLL+QY+++F +P  LP KR IDHRILTLP QKPINVRPYKY H QKEEIEKLV EM
Sbjct: 559 MIQFLLHQYSDVFKSPTTLPPKRSIDHRILTLPGQKPINVRPYKYGHQQKEEIEKLVIEM 618

Query: 61  LQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGA 120
           LQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY+KLNKITIADKF IPVIEELLDELHGA
Sbjct: 619 LQTGIIRPSHSPFSSPVLLVKKKDGGWRFCVDYRKLNKITIADKFPIPVIEELLDELHGA 678

Query: 121 TIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ---- 180
           T+FSKLDLKSGYHQIRM++EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ    
Sbjct: 679 TVFSKLDLKSGYHQIRMREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKP 738

Query: 181 -------------------------HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNI 220
                                    HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH I
Sbjct: 739 FLRRCVLVFFDDILVYSSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVI 798

[Close]

BLAST of Cmc07g0189681 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-06
Identity = 21/39 (53.85%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 49 QKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGW 88
          ++  ++  + EML+A II+P+ SP+SSP+LLV+KKDGGW
Sbjct: 41 RRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

[Close]

BLAST of Cmc07g0189681 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 3.5e-06
Identity = 24/45 (53.33%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 177 HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHN--ISKKGMEVD 220
           HLG+V  I   +Q YANRKKC F   QI YLGH   IS +G+  D
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSAD 47

The following BLAST results are available for this feature:

BLAST of Cmc07g0189681 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065995.1	3.6e-101	75.40	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28942.1 Ty3/gyp...	[more]
TYK21035.1	5.1e-100	74.60	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30523.1 Ty3/gyp...	[more]
KAA0046359.1	1.1e-99	74.60	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0059481.1	1.5e-99	74.60	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK28944.1	2.5e-99	74.60	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0189681 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	4.9e-37	39.72	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	4.9e-37	39.72	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P20825	4.6e-35	35.46	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	6.0e-35	33.99	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P04323	1.1e-33	36.84	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of Cmc07g0189681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJU2	1.7e-101	75.40	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3E325	2.5e-100	74.60	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TYN3	5.5e-100	74.60	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7V194	7.2e-100	74.60	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BBH7	1.2e-99	74.60	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc07g0189681 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	1.6e-06	53.85	DNA/RNA polymerases superfamily protein	[more]
ATMG00860.1	3.5e-06	53.33	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 80..176 e-value: 5.1E-14 score: 52.3
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 105..176 e-value: 1.6E-63 score: 215.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 178..217 e-value: 4.2E-10 score: 41.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 25..165 e-value: 1.6E-63 score: 215.9
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 3..179
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 3..179
None	No IPR available	CDD	cd01647	RT_LTR	coord: 64..211 e-value: 2.64322E-72 score: 215.537
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 7..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0189681.1	Cmc07g0189681.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding