Cmc07g0189631 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0189631
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 8348437 .. 8349217 (+)
RNA-Seq Expression	Cmc07g0189631
Synteny	Cmc07g0189631

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTCAGTTTGACGAATGCTCCATCAGTGTTTATGGATTTGATGAACAAAGTTTTAAGGGAGTTCCTAGACACTTTTGTGATTGTGTTTATTAACGATATTTTGTTATATTCCAAGACAGAGGCAAAACATGAGGAGCATTTACGCATGGTTCTAGAAACCCTTCGAGCTAGTAAATTGTTTGAAAAGTTCTCAAAATGTGAGTTTTGGTTGGAGCAAGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGGTTCTGTGGATCCAACTAAGATAGAGACAGTTACCAGTTGGCCCCGACATTCCACAATCAGTGAGGTTCGTAGCTTTCTGGGTTTAACAGATTATTACCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGTTTGGAGCAAGGCCTGTAAGGACAGTTTTCAGAACCTTAAACATAAGCTAGTTACTGCACCGGTTCTTACTGTACTTGATGGTTCAGAGAGTTTTGTGATTTACAGTTATGCTTCTAAGAAAGGTTTGGGTTGTATTTTGATGCAGCAAGATAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAATTACCCTACCCATGATTTAGAGTTGGCAGCAGTAGTTTTTACACTGAAGATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGGATCATAAAAGCTTGAAATACTTCTTCACTCAGAAGGAATTGAATATGAGATAA

mRNA sequence

ATGTCTTTCAGTTTGACGAATGCTCCATCAGTGTTTATGGATTTGATGAACAAAGTTTTAAGGGAGTTCCTAGACACTTTTGTGATTGTGTTTATTAACGATATTTTGTTATATTCCAAGACAGAGGCAAAACATGAGGAGCATTTACGCATGGTTCTAGAAACCCTTCGAGCTAGTAAATTGTTTGAAAAGTTCTCAAAATGTGAGTTTTGGTTGGAGCAAGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGGTTCTGTGGATCCAACTAAGATAGAGACAGTTACCAGTTGGCCCCGACATTCCACAATCAGTGAGGTTCGTAGCTTTCTGGGTTTAACAGATTATTACCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGTTTGGAGCAAGGCCTTTATGCTTCTAAGAAAGGTTTGGGTTGTATTTTGATGCAGCAAGATAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAATTACCCTACCCATGATTTAGAGTTGGCAGCAGTAGTTTTTACACTGAAGATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGGATCATAAAAGCTTGAAATACTTCTTCACTCAGAAGGAATTGAATATGAGATAA

Coding sequence (CDS)

ATGTCTTTCAGTTTGACGAATGCTCCATCAGTGTTTATGGATTTGATGAACAAAGTTTTAAGGGAGTTCCTAGACACTTTTGTGATTGTGTTTATTAACGATATTTTGTTATATTCCAAGACAGAGGCAAAACATGAGGAGCATTTACGCATGGTTCTAGAAACCCTTCGAGCTAGTAAATTGTTTGAAAAGTTCTCAAAATGTGAGTTTTGGTTGGAGCAAGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGGTTCTGTGGATCCAACTAAGATAGAGACAGTTACCAGTTGGCCCCGACATTCCACAATCAGTGAGGTTCGTAGCTTTCTGGGTTTAACAGATTATTACCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGTTTGGAGCAAGGCCTTTATGCTTCTAAGAAAGGTTTGGGTTGTATTTTGATGCAGCAAGATAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAATTACCCTACCCATGATTTAGAGTTGGCAGCAGTAGTTTTTACACTGAAGATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGGATCATAAAAGCTTGAAATACTTCTTCACTCAGAAGGAATTGAATATGAGATAA

Protein sequence

MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFVCLEQGLYASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR

Homology

[Close]

BLAST of Cmc07g0189631 vs. NCBI nr
Match: TYK29834.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 387.1 bits (993), Expect = 1.0e-103
Identity = 193/234 (82.48%), Postives = 210/234 (89.74%), Query Frame = 0


Query: 1   MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
           MSF LTNAP+VFMDLMN+V REFLDTFVIVF +DIL+YSK EA+HE+HLRMVL+TLRA+K
Sbjct: 241 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFYDDILIYSKIEAEHEKHLRMVLQTLRANK 300

Query: 61  LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
           L+ KFSKCEFWL+Q+SFLGHVVSKAG SVDP KIE VTSWPR ST+SEVRSFLGL  YYR
Sbjct: 301 LYAKFSKCEFWLKQISFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLIGYYR 360

Query: 121 RFVENFSRIATPLTQLTRKGAPFVCLEQGLY-----ASKKGLGCILMQQDKVVAYASRQL 180
            FVENFSRIATPLTQLTRKG PFV  +  ++     ASKKGLGC+LMQQ KVVAYASRQ+
Sbjct: 361 WFVENFSRIATPLTQLTRKGTPFVWSKAWIFVIYSDASKKGLGCVLMQQGKVVAYASRQM 420

Query: 181 KSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR 230
           KSHEQNYPTHDLELAAVVF LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
Sbjct: 421 KSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR 474

[Close]

BLAST of Cmc07g0189631 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 382.9 bits (982), Expect = 2.0e-102
Identity = 200/258 (77.52%), Postives = 212/258 (82.17%), Query Frame = 0


Query: 1   MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
           MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +K
Sbjct: 115 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 174

Query: 61  LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
           L+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIE VT W R ST+SEVRSFLGL  YYR
Sbjct: 175 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 234

Query: 121 RFVENFSRIATPLTQLTRKGAPFV----------CLEQGLY------------------- 180
           RFVENFSRIATPLTQLTRKGAPFV           L+Q L                    
Sbjct: 235 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGNFVIYSD 294

Query: 181 ASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIF 230
           ASKKGLGC+LMQQ KVVAYASRQLKSHEQNYPTHDLELAAVVF LKIWRHYLYGEKIQIF
Sbjct: 295 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 354

[Close]

BLAST of Cmc07g0189631 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 382.9 bits (982), Expect = 2.0e-102
Identity = 200/258 (77.52%), Postives = 212/258 (82.17%), Query Frame = 0


Query: 1    MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
            MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +K
Sbjct: 948  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 1007

Query: 61   LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
            L+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIE VT W R ST+SEVRSFLGL  YYR
Sbjct: 1008 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 1067

Query: 121  RFVENFSRIATPLTQLTRKGAPFV----------CLEQGLY------------------- 180
            RFVENFSRIATPLTQLTRKGAPFV           L+Q L                    
Sbjct: 1068 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSD 1127

Query: 181  ASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIF 230
            ASKKGLGC+LMQQ KVVAYASRQLKSHEQNYPTHDLELAAVVF LKIWRHYLYGEKIQIF
Sbjct: 1128 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 1187

[Close]

BLAST of Cmc07g0189631 vs. NCBI nr
Match: KAA0043070.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 382.9 bits (982), Expect = 2.0e-102
Identity = 201/258 (77.91%), Postives = 213/258 (82.56%), Query Frame = 0


Query: 1   MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
           MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +K
Sbjct: 604 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 663

Query: 61  LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
           L+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIETVTSW R ST+SEVRSFLGL  YYR
Sbjct: 664 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIETVTSWTRPSTVSEVRSFLGLAGYYR 723

Query: 121 RFVENFSRIATPLTQLTRKGAPFV----C------LEQGLY------------------- 180
           RFVENFSRIATPLTQLTRKGAPFV    C      L+Q L                    
Sbjct: 724 RFVENFSRIATPLTQLTRKGAPFVWNKACEDSFQNLKQKLVTALVLTVPDGSGSFVIYSD 783

Query: 181 ASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIF 230
            SKKGLGC+LMQQ KVVAYASRQLKSHEQNYPTHDLELA VVF LKIWRHYLYGEKIQIF
Sbjct: 784 GSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELATVVFALKIWRHYLYGEKIQIF 843

[Close]

BLAST of Cmc07g0189631 vs. NCBI nr
Match: KAA0042119.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 382.9 bits (982), Expect = 2.0e-102
Identity = 201/258 (77.91%), Postives = 214/258 (82.95%), Query Frame = 0


Query: 1   MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
           MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +K
Sbjct: 73  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 132

Query: 61  LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
           L+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIE VTSW R ST+SEVRSFLGL  YYR
Sbjct: 133 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYR 192

Query: 121 RFVENFSRIATPLTQLTRKGAPFV----C------LEQGLY------------------- 180
           RFVENFSRIATPLTQLTRKGAPFV    C      L+Q L                    
Sbjct: 193 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 252

Query: 181 ASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIF 230
           AS+KGLGC+LMQQ KVVAYASRQLKSHEQNYPTHDLELAAVVF LKIWRHYLYGEKIQIF
Sbjct: 253 ASRKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 312

[Close]

BLAST of Cmc07g0189631 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.4e-36
Identity = 86/259 (33.20%), Postives = 137/259 (52.90%), Query Frame = 0


Query: 1   MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
           M F L NAP+ F   MN +LR  L+   +V+++DI+++S +  +H + L +V E L  + 
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
           L  +  KCEF  ++ +FLGHV++  G   +P KIE +  +P  +   E+++FLGLT YYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVENFSRIATPLTQLTRKG----------------APFVCLEQGLY------------- 180
           +F+ NF+ IA P+T+  +K                   ++  E  +              
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 -ASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQI 230
            AS   LG +L Q    ++Y SR L  HE NY T + EL A+V+  K +RHYL G   +I
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEI 573

[Close]

BLAST of Cmc07g0189631 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.1e-34
Identity = 82/255 (32.16%), Postives = 132/255 (51.76%), Query Frame = 0


Query: 1   MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
           M F L NAP+ F   MN +LR  L+   +V+++DI+++S +  +H   +++V   L  + 
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
           L  +  KCEF  ++ +FLGH+V+  G   +P K++ + S+P  +   E+R+FLGLT YYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVENFSRIATPLTQLTRKGA-----------------------PFVCLEQ-------GL 180
           +F+ N++ IA P+T   +K                         P + L           
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 YASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQI 226
            AS   LG +L Q    +++ SR L  HE NY   + EL A+V+  K +RHYL G +  I
Sbjct: 513 DASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLI 572

[Close]

BLAST of Cmc07g0189631 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.0e-32
Identity = 81/274 (29.56%), Postives = 142/274 (51.82%), Query Frame = 0


Query: 1   MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
           + F L NAP++F  +++ +LRE +     V+I+DI+++S+    H ++LR+VL +L  + 
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
           L     K  F   QV FLG++V+  G   DP K+  ++  P  +++ E++ FLG+T YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVENFSRIATPLTQLTR------------------------------------KGAPFV 180
           +F+++++++A PLT LTR                                    +   F 
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 CLEQGLY----ASKKGLGCILMQ----QDKVVAYASRQLKSHEQNYPTHDLELAAVVFTL 230
           C  +  +    AS   +G +L Q    +D+ +AY SR L   E+NY T + E+ A++++L
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSL 489

[Close]

BLAST of Cmc07g0189631 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.4e-31
Identity = 84/274 (30.66%), Postives = 137/274 (50.00%), Query Frame = 0


Query: 1   MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
           + F L NA S+F   ++ VLRE +     V+++D++++S+ E+ H  H+  VL+ L  + 
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
           +     K  F+ E V +LG +VSK G   DP K++ +  +P    + +VRSFLGL  YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFVENFSRIATPLTQL----------------------TRKGA----------------- 180
            F+++F+ IA P+T +                      T++ A                 
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 -----PFVCLEQGLYASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTL 230
                PF   +    AS  G+G +L Q+ + +   SR LK  EQNY T++ EL A+V+ L
Sbjct: 489 PDFKKPF---DLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWAL 548

[Close]

BLAST of Cmc07g0189631 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 122.1 bits (305), Expect = 8.2e-27
Identity = 82/250 (32.80%), Postives = 125/250 (50.00%), Query Frame = 0


Query: 1   MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
           M F L NAPS F   M    R+    FV V+++DIL++S++  +H +HL  VLE L+   
Sbjct: 718 MPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNEN 777

Query: 61  LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
           L  K  KC+F  E+  FLG+ +     +    K   +  +P   T+ + + FLG+ +YYR
Sbjct: 778 LIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYR 837

Query: 121 RFVENFSRIATPL-------TQLTRKGAPFV-------CLEQGLY-------------AS 180
           RF+ N S+IA P+       +Q T K    +       C    L              AS
Sbjct: 838 RFIPNCSKIAQPIQLFICDKSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDAS 897

Query: 181 KKGLGCILMQQDK------VVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEK 218
           K G+G +L + D       VV Y S+ L+S ++NYP  +LEL  ++  L  +R+ L+G+ 
Sbjct: 898 KDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKH 957

[Close]

BLAST of Cmc07g0189631 vs. ExPASy TrEMBL
Match: A0A5D3E1T8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00660 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 5.1e-104
Identity = 193/234 (82.48%), Postives = 210/234 (89.74%), Query Frame = 0


Query: 1   MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
           MSF LTNAP+VFMDLMN+V REFLDTFVIVF +DIL+YSK EA+HE+HLRMVL+TLRA+K
Sbjct: 241 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFYDDILIYSKIEAEHEKHLRMVLQTLRANK 300

Query: 61  LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
           L+ KFSKCEFWL+Q+SFLGHVVSKAG SVDP KIE VTSWPR ST+SEVRSFLGL  YYR
Sbjct: 301 LYAKFSKCEFWLKQISFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLIGYYR 360

Query: 121 RFVENFSRIATPLTQLTRKGAPFVCLEQGLY-----ASKKGLGCILMQQDKVVAYASRQL 180
            FVENFSRIATPLTQLTRKG PFV  +  ++     ASKKGLGC+LMQQ KVVAYASRQ+
Sbjct: 361 WFVENFSRIATPLTQLTRKGTPFVWSKAWIFVIYSDASKKGLGCVLMQQGKVVAYASRQM 420

Query: 181 KSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR 230
           KSHEQNYPTHDLELAAVVF LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
Sbjct: 421 KSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR 474

[Close]

BLAST of Cmc07g0189631 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.5e-103
Identity = 200/258 (77.52%), Postives = 212/258 (82.17%), Query Frame = 0


Query: 1    MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
            MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +K
Sbjct: 948  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 1007

Query: 61   LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
            L+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIE VT W R ST+SEVRSFLGL  YYR
Sbjct: 1008 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 1067

Query: 121  RFVENFSRIATPLTQLTRKGAPFV----------CLEQGLY------------------- 180
            RFVENFSRIATPLTQLTRKGAPFV           L+Q L                    
Sbjct: 1068 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSD 1127

Query: 181  ASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIF 230
            ASKKGLGC+LMQQ KVVAYASRQLKSHEQNYPTHDLELAAVVF LKIWRHYLYGEKIQIF
Sbjct: 1128 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 1187

[Close]

BLAST of Cmc07g0189631 vs. ExPASy TrEMBL
Match: A0A5A7TIB4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold158G00050 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.5e-103
Identity = 201/258 (77.91%), Postives = 213/258 (82.56%), Query Frame = 0


Query: 1   MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
           MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +K
Sbjct: 604 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 663

Query: 61  LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
           L+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIETVTSW R ST+SEVRSFLGL  YYR
Sbjct: 664 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIETVTSWTRPSTVSEVRSFLGLAGYYR 723

Query: 121 RFVENFSRIATPLTQLTRKGAPFV----C------LEQGLY------------------- 180
           RFVENFSRIATPLTQLTRKGAPFV    C      L+Q L                    
Sbjct: 724 RFVENFSRIATPLTQLTRKGAPFVWNKACEDSFQNLKQKLVTALVLTVPDGSGSFVIYSD 783

Query: 181 ASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIF 230
            SKKGLGC+LMQQ KVVAYASRQLKSHEQNYPTHDLELA VVF LKIWRHYLYGEKIQIF
Sbjct: 784 GSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELATVVFALKIWRHYLYGEKIQIF 843

[Close]

BLAST of Cmc07g0189631 vs. ExPASy TrEMBL
Match: A0A5A7TLA3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.5e-103
Identity = 201/258 (77.91%), Postives = 214/258 (82.95%), Query Frame = 0


Query: 1   MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
           MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +K
Sbjct: 73  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 132

Query: 61  LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
           L+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIE VTSW R ST+SEVRSFLGL  YYR
Sbjct: 133 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYR 192

Query: 121 RFVENFSRIATPLTQLTRKGAPFV----C------LEQGLY------------------- 180
           RFVENFSRIATPLTQLTRKGAPFV    C      L+Q L                    
Sbjct: 193 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 252

Query: 181 ASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIF 230
           AS+KGLGC+LMQQ KVVAYASRQLKSHEQNYPTHDLELAAVVF LKIWRHYLYGEKIQIF
Sbjct: 253 ASRKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 312

[Close]

BLAST of Cmc07g0189631 vs. ExPASy TrEMBL
Match: Q84KB0 (Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.5e-103
Identity = 200/258 (77.52%), Postives = 212/258 (82.17%), Query Frame = 0


Query: 1   MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASK 60
           MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +K
Sbjct: 115 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 174

Query: 61  LFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYR 120
           L+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIE VT W R ST+SEVRSFLGL  YYR
Sbjct: 175 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 234

Query: 121 RFVENFSRIATPLTQLTRKGAPFV----------CLEQGLY------------------- 180
           RFVENFSRIATPLTQLTRKGAPFV           L+Q L                    
Sbjct: 235 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGNFVIYSD 294

Query: 181 ASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIF 230
           ASKKGLGC+LMQQ KVVAYASRQLKSHEQNYPTHDLELAAVVF LKIWRHYLYGEKIQIF
Sbjct: 295 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 354

[Close]

BLAST of Cmc07g0189631 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 3.2e-18
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 48  HLRMVLETLRASKLFEKFSKCEFWLEQVSFLG--HVVSKAGGSVDPTKIETVTSWPRHST 107
           HL MVL+     + +    KC F   Q+++LG  H++S  G S DP K+E +  WP    
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 ISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGA 142
            +E+R FLGLT YYRRFV+N+ +I  PLT+L +K +
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS 98

The following BLAST results are available for this feature:

BLAST of Cmc07g0189631 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29834.1	1.0e-103	82.48	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
AAO45752.1	2.0e-102	77.52	pol protein [Cucumis melo subsp. melo]	[more]
TYK01613.1	2.0e-102	77.52	pol protein [Cucumis melo var. makuwa]	[more]
KAA0043070.1	2.0e-102	77.91	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0042119.1	2.0e-102	77.91	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0189631 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	4.4e-36	33.20	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	4.1e-34	32.16	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	5.0e-32	29.56	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	1.4e-31	30.66	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q99315	8.2e-27	32.80	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc07g0189631 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1T8	5.1e-104	82.48	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BPI1	9.5e-103	77.52	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7TIB4	9.5e-103	77.91	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]
A0A5A7TLA3	9.5e-103	77.91	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE...	[more]
Q84KB0	9.5e-103	77.52	Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Cmc07g0189631 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	3.2e-18	42.71	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 5..81 e-value: 3.4E-11 score: 43.1
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 152..228 e-value: 2.4E-27 score: 95.3
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..187 e-value: 6.9E-17 score: 63.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..86 e-value: 1.5E-29 score: 104.6
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 80..221
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 80..221
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 2.33859E-31 score: 111.533
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 152..229 e-value: 2.37815E-38 score: 127.609
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..228

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0189631.1	Cmc07g0189631.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding