Cmc07g0189531 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0189531
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr07: 8262770 .. 8263129 (-)
RNA-Seq Expression	Cmc07g0189531
Synteny	Cmc07g0189531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTCAAAGGTACACTTGACTATGGGTTGTTTTATTCTTCATCTAAAGAATTCAAGTTTGAAGGCTATTGTGATAGTGACTGGGCTAAAGATACTAATGATCGAAAGAGCACTAGTAGATATGTTTTCTTTATTGGTAATCCTGCATTTACTTGGAGTTCTAAGAAGCAACCTATTGTGACATTATCAACTTGTGAAGCAGAATACGTTGTTGTAGCTTTATGTGTTTGTCATGCAGTTTGGTTAAGAAATTTGTTAAAGATAGTTGGAATTTTGCAAGATGATCCAAACTGTGATCCATGTAGATAA

mRNA sequence

ATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTCAAAGGTACACTTGACTATGGGTTGTTTTATTCTTCATCTAAAGAATTCAAGTTTGAAGGCTATTGTGATAGTGACTGGGCTAAAGATACTAATGATCGAAAGAGCACTAGTAGATATGTTTTCTTTATTGGTAATCCTGCATTTACTTGGAGTTCTAAGAAGCAACCTATTGTGACATTATCAACTTGTGAAGCAGAATACGTTGTTGTAGCTTTATGTGTTTGTCATGCAGTTTGGTTAAGAAATTTGTTAAAGATAGTTGGAATTTTGCAAGATGATCCAAACTGTGATCCATGTAGATAA

Coding sequence (CDS)

ATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTCAAAGGTACACTTGACTATGGGTTGTTTTATTCTTCATCTAAAGAATTCAAGTTTGAAGGCTATTGTGATAGTGACTGGGCTAAAGATACTAATGATCGAAAGAGCACTAGTAGATATGTTTTCTTTATTGGTAATCCTGCATTTACTTGGAGTTCTAAGAAGCAACCTATTGTGACATTATCAACTTGTGAAGCAGAATACGTTGTTGTAGCTTTATGTGTTTGTCATGCAGTTTGGTTAAGAAATTTGTTAAAGATAGTTGGAATTTTGCAAGATGATCCAAACTGTGATCCATGTAGATAA

Protein sequence

MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDPNCDPCR

Homology

[Close]

BLAST of Cmc07g0189531 vs. NCBI nr
Match: KAA0052395.1 (putative copia-type polyprotein [Cucumis melo var. makuwa] >TYK19221.1 putative copia-type polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 251.1 bits (640), Expect = 4.7e-63
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVF 60
           MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTS YVF
Sbjct: 376 MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSGYVF 435

Query: 61  FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDPNCDPCR 120
           FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDPNCDPCR
Sbjct: 436 FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDPNCDPCR 494

[Close]

BLAST of Cmc07g0189531 vs. NCBI nr
Match: TYJ97307.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 7.4e-53
Identity = 103/113 (91.15%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVF 60
           MESPTTTHLKVAKRILRYL+GTLDYGLFYSSSKEFK EGYCDSDWA DTNDRKSTS YVF
Sbjct: 778 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 837

Query: 61  FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDP 114
           FIGN AFTWSSKKQPIVTLSTCEAEY+  A CVCHAVWLRNLLK VGILQDDP
Sbjct: 838 FIGNTAFTWSSKKQPIVTLSTCEAEYIAAASCVCHAVWLRNLLKTVGILQDDP 890

[Close]

BLAST of Cmc07g0189531 vs. NCBI nr
Match: KAA0032699.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ98731.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 9.7e-53
Identity = 105/113 (92.92%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVF 60
           MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFK EGYCDSDWA+DTNDRKSTS YV 
Sbjct: 31  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVL 90

Query: 61  FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDP 114
           FIGN AFTWSSKKQPIVTLSTCEAEYVVVA CVCHAVWLRNLLK VGILQD P
Sbjct: 91  FIGNIAFTWSSKKQPIVTLSTCEAEYVVVASCVCHAVWLRNLLKKVGILQDGP 143

[Close]

BLAST of Cmc07g0189531 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-52
Identity = 103/113 (91.15%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVF 60
            MESPTTTHLKVAKRILRYL+GTLDYGLFYSSSKEFK EGYCDSDWA DTNDRKSTS YVF
Sbjct: 1143 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 1202

Query: 61   FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDP 114
            FIGN AFTWSSKKQPIVTLSTCEAEYV  A CVCHAVWLRNLLK VGILQ+DP
Sbjct: 1203 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDP 1255

[Close]

BLAST of Cmc07g0189531 vs. NCBI nr
Match: KAA0056915.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-52
Identity = 103/113 (91.15%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVF 60
           MESPTTTHLKVAKRILRYL+GTLDYGLFYSSSKEFK EGYCDSDWA DTNDRKSTS YVF
Sbjct: 111 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 170

Query: 61  FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDP 114
           FIGN AFTWSSKKQPIVTLSTCEAEYV  A CVCHAVWLRNLLK VGILQ+DP
Sbjct: 171 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDP 223

[Close]

BLAST of Cmc07g0189531 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.7e-18
Identity = 47/113 (41.59%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVF 60
            M  PT  H    KR+LRYL GT D+G+F           Y D+DWA DT+D  ST+ Y+ 
Sbjct: 1256 MHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIV 1315

Query: 61   FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDP 114
            ++G+   +WSSKKQ  V  S+ EAEY  VA       W+ +LL  +GI    P
Sbjct: 1316 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHP 1368

[Close]

BLAST of Cmc07g0189531 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.1e-17
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVF 60
            M  PT  HL+  KRILRYL GT ++G+F           Y D+DWA D +D  ST+ Y+ 
Sbjct: 1273 MHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIV 1332

Query: 61   FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGI 109
            ++G+   +WSSKKQ  V  S+ EAEY  VA       W+ +LL  +GI
Sbjct: 1333 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGI 1380

[Close]

BLAST of Cmc07g0189531 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.4e-16
Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVF 60
           M  PT     + KR+LRY+KGT+ +GL+   + +   + +CDSDWA  T+ R+ST+ +  
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVW 99
           F+G    +WS+K+QP V+ S+ E EY  +AL      W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc07g0189531 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.8e-16
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 4   PTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIG 63
           P  TH +  KR+LRYL+ T  YGL ++ +   K  GY D+DWA D   R+STS Y+F + 
Sbjct: 38  PCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLN 97

Query: 64  NPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWL 100
               +W SKKQ  V LS+ E EY+ ++     AVWL
Sbjct: 98  GGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of Cmc07g0189531 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 77.8 bits (190), Expect = 9.2e-14
Identity = 44/104 (42.31%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 13   KRILRYLKGTLDYGLFYSSSKEF--KFEGYCDSDWAKDTNDRKSTSRYVF-FIGNPAFTW 72
            KR+LRYLKGT+D  L +  +  F  K  GY DSDWA    DRKST+ Y+F         W
Sbjct: 1222 KRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICW 1281

Query: 73   SSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDP 114
            ++K+Q  V  S+ EAEY+ +   V  A+WL+ LL  + I  ++P
Sbjct: 1282 NTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENP 1325

[Close]

BLAST of Cmc07g0189531 vs. ExPASy TrEMBL
Match: A0A5D3D6N3 (Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00170 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.3e-63
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVF 60
           MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTS YVF
Sbjct: 376 MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSGYVF 435

Query: 61  FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDPNCDPCR 120
           FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDPNCDPCR
Sbjct: 436 FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDPNCDPCR 494

[Close]

BLAST of Cmc07g0189531 vs. ExPASy TrEMBL
Match: A0A5D3BDV6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001060 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.6e-53
Identity = 103/113 (91.15%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVF 60
           MESPTTTHLKVAKRILRYL+GTLDYGLFYSSSKEFK EGYCDSDWA DTNDRKSTS YVF
Sbjct: 778 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 837

Query: 61  FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDP 114
           FIGN AFTWSSKKQPIVTLSTCEAEY+  A CVCHAVWLRNLLK VGILQDDP
Sbjct: 838 FIGNTAFTWSSKKQPIVTLSTCEAEYIAAASCVCHAVWLRNLLKTVGILQDDP 890

[Close]

BLAST of Cmc07g0189531 vs. ExPASy TrEMBL
Match: A0A5D3BJ51 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00330 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.7e-53
Identity = 105/113 (92.92%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVF 60
           MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFK EGYCDSDWA+DTNDRKSTS YV 
Sbjct: 31  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVL 90

Query: 61  FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDP 114
           FIGN AFTWSSKKQPIVTLSTCEAEYVVVA CVCHAVWLRNLLK VGILQD P
Sbjct: 91  FIGNIAFTWSSKKQPIVTLSTCEAEYVVVASCVCHAVWLRNLLKKVGILQDGP 143

[Close]

BLAST of Cmc07g0189531 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 8.0e-53
Identity = 103/113 (91.15%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVF 60
            MESPTTTHLKVAKRILRYL+GTLDYGLFYSSSKEFK EGYCDSDWA DTNDRKSTS YVF
Sbjct: 1143 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 1202

Query: 61   FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDP 114
            FIGN AFTWSSKKQPIVTLSTCEAEYV  A CVCHAVWLRNLLK VGILQ+DP
Sbjct: 1203 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDP 1255

[Close]

BLAST of Cmc07g0189531 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 8.0e-53
Identity = 103/113 (91.15%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVF 60
            MESPTTTHLKVAKRILRYL+GTLDYGLFYSSSKEFK EGYCDSDWA DTNDRKSTS YVF
Sbjct: 1143 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 1202

Query: 61   FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGILQDDP 114
            FIGN AFTWSSKKQPIVTLSTCEAEYV  A CVCHAVWLRNLLK VGILQ+DP
Sbjct: 1203 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDP 1255

[Close]

BLAST of Cmc07g0189531 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-17
Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVF 60
           M  PT     + KR+LRY+KGT+ +GL+   + +   + +CDSDWA  T+ R+ST+ +  
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVW 99
           F+G    +WS+K+QP V+ S+ E EY  +AL      W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc07g0189531 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15
Identity = 36/103 (34.95%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 2   ESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFF 61
           E+P   H +   +IL Y+KGT+  GLFYSS  E + + + D+ +    + R+ST+ Y  F
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466

Query: 62  IGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLK 105
           +G    +W SKKQ +V+ S+ EAEY  ++      +WL    +
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFR 509

[Close]

BLAST of Cmc07g0189531 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 47.4 bits (111), Expect = 9.5e-06
Identity = 18/53 (33.96%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 6  TTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRY 59
          T  ++   ++L Y+KGT+  GLFYS++ + + + + DSDWA   + R+S + +
Sbjct: 26 TAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc07g0189531 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052395.1	4.7e-63	99.16	putative copia-type polyprotein [Cucumis melo var. makuwa] >TYK19221.1 putative ...	[more]
TYJ97307.1	7.4e-53	91.15	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0032699.1	9.7e-53	92.92	putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ98731.1 putative m...	[more]
TYK18362.1	1.7e-52	91.15	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0056915.1	1.7e-52	91.15	retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc07g0189531 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	4.7e-18	41.59	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.1e-17	42.59	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	3.4e-16	38.78	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P0CV72	5.8e-16	43.75	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	9.2e-14	42.31	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc07g0189531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D6N3	2.3e-63	99.16	Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3BDV6	3.6e-53	91.15	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BJ51	4.7e-53	92.92	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7V3X9	8.0e-53	91.15	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	8.0e-53	91.15	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc07g0189531 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	2.4e-17	38.78	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	1.7e-15	34.95	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	9.5e-06	33.96	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..62
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 1..62
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 38..116 e-value: 5.72654E-39 score: 125.658

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0189531.1	Cmc07g0189531.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding