Cmc07g0188661 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0188661
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 7026011 .. 7026631 (+)
RNA-Seq Expression	Cmc07g0188661
Synteny	Cmc07g0188661

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGTACAAAATCCTAAAAAATTGGAACATTGTTCAAAATTATGCTTATTCGTAGGATATCCAAAGGAATTTAGAGGTGGTCTGTTTTACGATCCTCAAGAAAATAAAGTATTTATATCTACAAACGCCACATTTTTAGAGGAAGATCACATAAGGGATCATCAACCTCGCAGTAAATTAGTATTAAATGAGATTTCTAAGAGTGCTACAGAAAAGCCTAGTTCATCCACTAAAGTAGTTGATAAAACTAAGATATCTAGTAGAAAACATCCTTCTCAAGAGTTGAGAGAGCCTCGACGTAGTGGAAGGGTTGTTCATCAACCTGATCACTACTTGGGTTTACGTGAAACTCAAGTTGTCATACTTGATGATGGCGCAGAAGATCCATTAACCTATAAACAGGCAATGAATGATGTAGACCATGACCAATGGATCAAAGCCATGAACCTCGAAATGGAGTCTATGTTCTTTAATTCTGTCAAGACTCTAGTATATCAACCAAATGACGTAAAATCTGTTGGTTGTAAATGGATCTATAAAAGAAAACTAGACCAAGCCAGTAAAGTACAGACTTTTAAGGCTCGACTTGTGGTAAAGGGTTATACCCAAAGAGAATGA

mRNA sequence

ATGTTAGTACAAAATCCTAAAAAATTGGAACATTGTTCAAAATTATGCTTATTCGTAGGATATCCAAAGGAATTTAGAGGTGGTCTGTTTTACGATCCTCAAGAAAATAAAGTATTTATATCTACAAACGCCACATTTTTAGAGGAAGATCACATAAGGGATCATCAACCTCGCAGTAAATTAGTATTAAATGAGATTTCTAAGAGTGCTACAGAAAAGCCTAGTTCATCCACTAAAGTAGTTGATAAAACTAAGATATCTAGTAGAAAACATCCTTCTCAAGAGTTGAGAGAGCCTCGACGTAGTGGAAGGGTTGTTCATCAACCTGATCACTACTTGGGTTTACGTGAAACTCAAGTTGTCATACTTGATGATGGCGCAGAAGATCCATTAACCTATAAACAGGCAATGAATGATGTAGACCATGACCAATGGATCAAAGCCATGAACCTCGAAATGGAGTCTATGTTCTTTAATTCTGTCAAGACTCTAGTATATCAACCAAATGACGTAAAATCTGTTGGTTGTAAATGGATCTATAAAAGAAAACTAGACCAAGCCAGTAAAGTACAGACTTTTAAGGCTCGACTTGTGGTAAAGGGTTATACCCAAAGAGAATGA

Coding sequence (CDS)

ATGTTAGTACAAAATCCTAAAAAATTGGAACATTGTTCAAAATTATGCTTATTCGTAGGATATCCAAAGGAATTTAGAGGTGGTCTGTTTTACGATCCTCAAGAAAATAAAGTATTTATATCTACAAACGCCACATTTTTAGAGGAAGATCACATAAGGGATCATCAACCTCGCAGTAAATTAGTATTAAATGAGATTTCTAAGAGTGCTACAGAAAAGCCTAGTTCATCCACTAAAGTAGTTGATAAAACTAAGATATCTAGTAGAAAACATCCTTCTCAAGAGTTGAGAGAGCCTCGACGTAGTGGAAGGGTTGTTCATCAACCTGATCACTACTTGGGTTTACGTGAAACTCAAGTTGTCATACTTGATGATGGCGCAGAAGATCCATTAACCTATAAACAGGCAATGAATGATGTAGACCATGACCAATGGATCAAAGCCATGAACCTCGAAATGGAGTCTATGTTCTTTAATTCTGTCAAGACTCTAGTATATCAACCAAATGACGTAAAATCTGTTGGTTGTAAATGGATCTATAAAAGAAAACTAGACCAAGCCAGTAAAGTACAGACTTTTAAGGCTCGACTTGTGGTAAAGGGTTATACCCAAAGAGAATGA

Protein sequence

MLVQNPKKLEHCSKLCLFVGYPKEFRGGLFYDPQENKVFISTNATFLEEDHIRDHQPRSKLVLNEISKSATEKPSSSTKVVDKTKISSRKHPSQELREPRRSGRVVHQPDHYLGLRETQVVILDDGAEDPLTYKQAMNDVDHDQWIKAMNLEMESMFFNSVKTLVYQPNDVKSVGCKWIYKRKLDQASKVQTFKARLVVKGYTQRE

Homology

[Close]

BLAST of Cmc07g0188661 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 335.9 bits (860), Expect = 2.5e-88
Identity = 166/206 (80.58%), Postives = 181/206 (87.86%), Query Frame = 0


Query: 1   MLVQNPKKLEHCSKLCLFVGYPKEFRGGLFYDPQENKVFISTNATFLEEDHIRDHQPRSK 60
           +LVQNPKKLE  SKLCLFVGYPKE RGGLFY PQENKVF+STNATFLEEDH R+HQPRSK
Sbjct: 676 VLVQNPKKLEPRSKLCLFVGYPKESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSK 735

Query: 61  LVLNEISKSATEKPSSSTKVVDKTKISSRKHPSQELREPRRSGRVVHQPDHYLGLRETQV 120
           +VL E+ K+AT+KPSSSTKVVDK  IS + H SQELR PRRSGRVVHQP+ YLGL ETQ+
Sbjct: 736 IVLKEMFKNATDKPSSSTKVVDKANISDQSHTSQELRVPRRSGRVVHQPNRYLGLVETQI 795

Query: 121 VILDDGAEDPLTYKQAMNDVDHDQWIKAMNLEMESMFFNSVKTLVYQPNDVKSVGCKWIY 180
           +I DDG EDPLTYKQAMNDVD DQWIKAMNLEMESM+FNSV TLV  P+DVK +GCKWIY
Sbjct: 796 IIPDDGVEDPLTYKQAMNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIY 855

Query: 181 KRKLDQASKVQTFKARLVVKGYTQRE 207
           KRK DQA KVQTFKARLV KGYTQ+E
Sbjct: 856 KRKRDQAGKVQTFKARLVAKGYTQKE 881

[Close]

BLAST of Cmc07g0188661 vs. NCBI nr
Match: TYK02298.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 324.7 bits (831), Expect = 5.7e-85
Identity = 163/190 (85.79%), Postives = 171/190 (90.00%), Query Frame = 0


Query: 17  LFVGYPKEFRGGLFYDPQENKVFISTNATFLEEDHIRDHQPRSKLVLNEISKSATEKPSS 76
           L +GYPKE RGGLFY+PQENKVF+STN TFLEEDHIRDHQP +KLVLNEISKSAT+KPSS
Sbjct: 101 LTMGYPKESRGGLFYNPQENKVFVSTNTTFLEEDHIRDHQPYNKLVLNEISKSATDKPSS 160

Query: 77  STKVVDKTKISSRKHPSQELREPRRSGRVVHQPDHYLGLRETQVVILDDGAEDPLTYKQA 136
           STKVVDKTKIS + HPSQELREP+  GRVVHQPD YLGL ETQVVI DDG EDPLTYKQA
Sbjct: 161 STKVVDKTKISGQTHPSQELREPQCIGRVVHQPDRYLGLSETQVVIPDDGVEDPLTYKQA 220

Query: 137 MNDVDHDQWIKAMNLEMESMFFNSVKTLVYQPNDVKSVGCKWIYKRKLDQASKVQTFKAR 196
           MNDVD DQWIKAMNLEMESMFFNSV TLV QPNDVK +GCKWIYKRK DQA KVQTFKAR
Sbjct: 221 MNDVDCDQWIKAMNLEMESMFFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 280

Query: 197 LVVKGYTQRE 207
           LV KGYTQRE
Sbjct: 281 LVAKGYTQRE 290

[Close]

BLAST of Cmc07g0188661 vs. NCBI nr
Match: KAA0060572.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 324.7 bits (831), Expect = 5.7e-85
Identity = 163/190 (85.79%), Postives = 171/190 (90.00%), Query Frame = 0


Query: 17  LFVGYPKEFRGGLFYDPQENKVFISTNATFLEEDHIRDHQPRSKLVLNEISKSATEKPSS 76
           L +GYPKE RGGLFY+PQENKVF+STN TFLEEDHIRDHQP +KLVLNEISKSAT+KPSS
Sbjct: 119 LTMGYPKESRGGLFYNPQENKVFVSTNTTFLEEDHIRDHQPYNKLVLNEISKSATDKPSS 178

Query: 77  STKVVDKTKISSRKHPSQELREPRRSGRVVHQPDHYLGLRETQVVILDDGAEDPLTYKQA 136
           STKVVDKTKIS + HPSQELREP+  GRVVHQPD YLGL ETQVVI DDG EDPLTYKQA
Sbjct: 179 STKVVDKTKISGQTHPSQELREPQCIGRVVHQPDRYLGLSETQVVIPDDGVEDPLTYKQA 238

Query: 137 MNDVDHDQWIKAMNLEMESMFFNSVKTLVYQPNDVKSVGCKWIYKRKLDQASKVQTFKAR 196
           MNDVD DQWIKAMNLEMESMFFNSV TLV QPNDVK +GCKWIYKRK DQA KVQTFKAR
Sbjct: 239 MNDVDCDQWIKAMNLEMESMFFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 298

Query: 197 LVVKGYTQRE 207
           LV KGYTQRE
Sbjct: 299 LVAKGYTQRE 308

[Close]

BLAST of Cmc07g0188661 vs. NCBI nr
Match: KAA0043452.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 320.1 bits (819), Expect = 1.4e-83
Identity = 158/206 (76.70%), Postives = 177/206 (85.92%), Query Frame = 0


Query: 1   MLVQNPKKLEHCSKLCLFVGYPKEFRGGLFYDPQENKVFISTNATFLEEDHIRDHQPRSK 60
           +LVQNPKKLE  SKLCLFVGYPKE +GGLFY+PQENKVF+STNATFLEEDHIR+HQ RSK
Sbjct: 20  VLVQNPKKLERRSKLCLFVGYPKESKGGLFYEPQENKVFVSTNATFLEEDHIRNHQTRSK 79

Query: 61  LVLNEISKSATEKPSSSTKVVDKTKISSRKHPSQELREPRRSGRVVHQPDHYLGLRETQV 120
           LVL EISK+ T++PSSSTK+VDKT+   + HPSQEL EPRRSGRVV Q D YLGL E Q 
Sbjct: 80  LVLEEISKNTTDRPSSSTKIVDKTRNIDQTHPSQELGEPRRSGRVVRQRDRYLGLSEAQT 139

Query: 121 VILDDGAEDPLTYKQAMNDVDHDQWIKAMNLEMESMFFNSVKTLVYQPNDVKSVGCKWIY 180
           VI +DG EDPLTYK+AMNDVD+DQWIKA  LEMESM+ NS+ TL+ QPNDVK +GCKWIY
Sbjct: 140 VIPNDGIEDPLTYKRAMNDVDYDQWIKANYLEMESMYSNSIWTLIDQPNDVKPIGCKWIY 199

Query: 181 KRKLDQASKVQTFKARLVVKGYTQRE 207
           KRK DQA KVQTFKARLV KGYTQ +
Sbjct: 200 KRKRDQAGKVQTFKARLVAKGYTQNK 225

[Close]

BLAST of Cmc07g0188661 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 319.7 bits (818), Expect = 1.8e-83
Identity = 159/206 (77.18%), Postives = 175/206 (84.95%), Query Frame = 0


Query: 1   MLVQNPKKLEHCSKLCLFVGYPKEFRGGLFYDPQENKVFISTNATFLEEDHIRDHQPRSK 60
           + VQNPKKLE  SKLCLFVGYPKE +GGLFYDPQENKVF+STNATFLEEDHIR+HQ RSK
Sbjct: 101 VFVQNPKKLERRSKLCLFVGYPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSK 160

Query: 61  LVLNEISKSATEKPSSSTKVVDKTKISSRKHPSQELREPRRSGRVVHQPDHYLGLRETQV 120
           LVL EISK+ T++PSS TKVVDKT+   + H  QEL +PRRSGRVV Q D YLGL E Q+
Sbjct: 161 LVLEEISKNTTDRPSSFTKVVDKTRNIGQTHHFQELGKPRRSGRVVRQSDRYLGLSEAQI 220

Query: 121 VILDDGAEDPLTYKQAMNDVDHDQWIKAMNLEMESMFFNSVKTLVYQPNDVKSVGCKWIY 180
           +I DDG EDPLTYK AMNDVD DQWIKAM+LEMESM+ NSV TLV QPNDVK +GCKWIY
Sbjct: 221 IIPDDGIEDPLTYKHAMNDVDRDQWIKAMDLEMESMYSNSVWTLVDQPNDVKPIGCKWIY 280

Query: 181 KRKLDQASKVQTFKARLVVKGYTQRE 207
           KRK DQA KVQTFKARLV KGYTQ+E
Sbjct: 281 KRKRDQAGKVQTFKARLVAKGYTQKE 306

[Close]

BLAST of Cmc07g0188661 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-14
Identity = 69/227 (30.40%), Postives = 106/227 (46.70%), Query Frame = 0


Query: 8   KLEHCSKLCLFVGYPKEFRGGLFYDPQENKVFISTNATFLEEDHIRDHQPRSKLVLNEI- 67
           KL+  S  C+F+GY  E  G   +DP + KV  S +  F  E  +R     S+ V N I 
Sbjct: 666 KLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVF-RESEVRTAADMSEKVKNGII 725

Query: 68  -----SKSATEKPSSSTKVVDKTK-------------------ISSRKHPSQ--ELREP- 127
                  S +  P+S+    D+                     +   +HP+Q  E  +P 
Sbjct: 726 PNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPL 785

Query: 128 RRSGRVVHQPDHYLGLRETQVVILDDGAEDPLTYKQAMNDVDHDQWIKAMNLEMESMFFN 187
           RRS R   +   Y     T+ V++ D  E P + K+ ++  + +Q +KAM  EMES+  N
Sbjct: 786 RRSERPRVESRRY---PSTEYVLISDDRE-PESLKEVLSHPEKNQLMKAMQEEMESLQKN 845

Query: 188 SVKTLVYQPNDVKSVGCKWIYKRKLDQASKVQTFKARLVVKGYTQRE 207
               LV  P   + + CKW++K K D   K+  +KARLVVKG+ Q++
Sbjct: 846 GTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKK 887

[Close]

BLAST of Cmc07g0188661 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.0e-07
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 129  DPLTYKQAMNDVDHDQWIKAMNLEMESMFFNSVKTLV-YQPNDVKSVGCKWIYKRKLDQA 188
            +P T  QAM D   D+W +AM  E+ +   N    LV   P  V  VGC+WI+ +K +  
Sbjct: 938  EPRTAIQAMKD---DRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSD 997

Query: 189  SKVQTFKARLVVKGYTQR 206
              +  +KARLV KGY QR
Sbjct: 998  GSLNRYKARLVAKGYNQR 1012

[Close]

BLAST of Cmc07g0188661 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.6e-05
Identity = 43/150 (28.67%), Postives = 64/150 (42.67%), Query Frame = 0


Query: 67   SKSATEKPSSSTKVVDKTKISSRKHPSQELREPRRSGRVVHQPDHYLGLRETQVVILDD- 126
            S S +   S+S+     T  S   HP   L +   +        H +G R    +I  + 
Sbjct: 883  SSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNP 942

Query: 127  ---------GAEDPLTYKQAMNDVDHDQWIKAMNLEMESMFFNSVKTLV-YQPNDVKSVG 186
                        +P T  QA+ D   ++W  AM  E+ +   N    LV   P+ V  VG
Sbjct: 943  KYSLAVSLAAESEPRTAIQALKD---ERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVG 1002

Query: 187  CKWIYKRKLDQASKVQTFKARLVVKGYTQR 206
            C+WI+ +K +    +  +KARLV KGY QR
Sbjct: 1003 CRWIFTKKYNSDGSLNRYKARLVAKGYNQR 1029

[Close]

BLAST of Cmc07g0188661 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.2e-88
Identity = 166/206 (80.58%), Postives = 181/206 (87.86%), Query Frame = 0


Query: 1   MLVQNPKKLEHCSKLCLFVGYPKEFRGGLFYDPQENKVFISTNATFLEEDHIRDHQPRSK 60
           +LVQNPKKLE  SKLCLFVGYPKE RGGLFY PQENKVF+STNATFLEEDH R+HQPRSK
Sbjct: 676 VLVQNPKKLEPRSKLCLFVGYPKESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSK 735

Query: 61  LVLNEISKSATEKPSSSTKVVDKTKISSRKHPSQELREPRRSGRVVHQPDHYLGLRETQV 120
           +VL E+ K+AT+KPSSSTKVVDK  IS + H SQELR PRRSGRVVHQP+ YLGL ETQ+
Sbjct: 736 IVLKEMFKNATDKPSSSTKVVDKANISDQSHTSQELRVPRRSGRVVHQPNRYLGLVETQI 795

Query: 121 VILDDGAEDPLTYKQAMNDVDHDQWIKAMNLEMESMFFNSVKTLVYQPNDVKSVGCKWIY 180
           +I DDG EDPLTYKQAMNDVD DQWIKAMNLEMESM+FNSV TLV  P+DVK +GCKWIY
Sbjct: 796 IIPDDGVEDPLTYKQAMNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIY 855

Query: 181 KRKLDQASKVQTFKARLVVKGYTQRE 207
           KRK DQA KVQTFKARLV KGYTQ+E
Sbjct: 856 KRKRDQAGKVQTFKARLVAKGYTQKE 881

[Close]

BLAST of Cmc07g0188661 vs. ExPASy TrEMBL
Match: A0A5D3BTJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G001090 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.8e-85
Identity = 163/190 (85.79%), Postives = 171/190 (90.00%), Query Frame = 0


Query: 17  LFVGYPKEFRGGLFYDPQENKVFISTNATFLEEDHIRDHQPRSKLVLNEISKSATEKPSS 76
           L +GYPKE RGGLFY+PQENKVF+STN TFLEEDHIRDHQP +KLVLNEISKSAT+KPSS
Sbjct: 101 LTMGYPKESRGGLFYNPQENKVFVSTNTTFLEEDHIRDHQPYNKLVLNEISKSATDKPSS 160

Query: 77  STKVVDKTKISSRKHPSQELREPRRSGRVVHQPDHYLGLRETQVVILDDGAEDPLTYKQA 136
           STKVVDKTKIS + HPSQELREP+  GRVVHQPD YLGL ETQVVI DDG EDPLTYKQA
Sbjct: 161 STKVVDKTKISGQTHPSQELREPQCIGRVVHQPDRYLGLSETQVVIPDDGVEDPLTYKQA 220

Query: 137 MNDVDHDQWIKAMNLEMESMFFNSVKTLVYQPNDVKSVGCKWIYKRKLDQASKVQTFKAR 196
           MNDVD DQWIKAMNLEMESMFFNSV TLV QPNDVK +GCKWIYKRK DQA KVQTFKAR
Sbjct: 221 MNDVDCDQWIKAMNLEMESMFFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 280

Query: 197 LVVKGYTQRE 207
           LV KGYTQRE
Sbjct: 281 LVAKGYTQRE 290

[Close]

BLAST of Cmc07g0188661 vs. ExPASy TrEMBL
Match: A0A5A7UXJ0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004410 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.8e-85
Identity = 163/190 (85.79%), Postives = 171/190 (90.00%), Query Frame = 0


Query: 17  LFVGYPKEFRGGLFYDPQENKVFISTNATFLEEDHIRDHQPRSKLVLNEISKSATEKPSS 76
           L +GYPKE RGGLFY+PQENKVF+STN TFLEEDHIRDHQP +KLVLNEISKSAT+KPSS
Sbjct: 119 LTMGYPKESRGGLFYNPQENKVFVSTNTTFLEEDHIRDHQPYNKLVLNEISKSATDKPSS 178

Query: 77  STKVVDKTKISSRKHPSQELREPRRSGRVVHQPDHYLGLRETQVVILDDGAEDPLTYKQA 136
           STKVVDKTKIS + HPSQELREP+  GRVVHQPD YLGL ETQVVI DDG EDPLTYKQA
Sbjct: 179 STKVVDKTKISGQTHPSQELREPQCIGRVVHQPDRYLGLSETQVVIPDDGVEDPLTYKQA 238

Query: 137 MNDVDHDQWIKAMNLEMESMFFNSVKTLVYQPNDVKSVGCKWIYKRKLDQASKVQTFKAR 196
           MNDVD DQWIKAMNLEMESMFFNSV TLV QPNDVK +GCKWIYKRK DQA KVQTFKAR
Sbjct: 239 MNDVDCDQWIKAMNLEMESMFFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 298

Query: 197 LVVKGYTQRE 207
           LV KGYTQRE
Sbjct: 299 LVAKGYTQRE 308

[Close]

BLAST of Cmc07g0188661 vs. ExPASy TrEMBL
Match: A0A5A7TJJ9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00700 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 6.8e-84
Identity = 158/206 (76.70%), Postives = 177/206 (85.92%), Query Frame = 0


Query: 1   MLVQNPKKLEHCSKLCLFVGYPKEFRGGLFYDPQENKVFISTNATFLEEDHIRDHQPRSK 60
           +LVQNPKKLE  SKLCLFVGYPKE +GGLFY+PQENKVF+STNATFLEEDHIR+HQ RSK
Sbjct: 20  VLVQNPKKLERRSKLCLFVGYPKESKGGLFYEPQENKVFVSTNATFLEEDHIRNHQTRSK 79

Query: 61  LVLNEISKSATEKPSSSTKVVDKTKISSRKHPSQELREPRRSGRVVHQPDHYLGLRETQV 120
           LVL EISK+ T++PSSSTK+VDKT+   + HPSQEL EPRRSGRVV Q D YLGL E Q 
Sbjct: 80  LVLEEISKNTTDRPSSSTKIVDKTRNIDQTHPSQELGEPRRSGRVVRQRDRYLGLSEAQT 139

Query: 121 VILDDGAEDPLTYKQAMNDVDHDQWIKAMNLEMESMFFNSVKTLVYQPNDVKSVGCKWIY 180
           VI +DG EDPLTYK+AMNDVD+DQWIKA  LEMESM+ NS+ TL+ QPNDVK +GCKWIY
Sbjct: 140 VIPNDGIEDPLTYKRAMNDVDYDQWIKANYLEMESMYSNSIWTLIDQPNDVKPIGCKWIY 199

Query: 181 KRKLDQASKVQTFKARLVVKGYTQRE 207
           KRK DQA KVQTFKARLV KGYTQ +
Sbjct: 200 KRKRDQAGKVQTFKARLVAKGYTQNK 225

[Close]

BLAST of Cmc07g0188661 vs. ExPASy TrEMBL
Match: A0A5A7UGR3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00750 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 8.9e-84
Identity = 159/206 (77.18%), Postives = 177/206 (85.92%), Query Frame = 0


Query: 1   MLVQNPKKLEHCSKLCLFVGYPKEFRGGLFYDPQENKVFISTNATFLEEDHIRDHQPRSK 60
           +LVQNPKKLEH SKLCLFVGYPKE +G LFYDPQENKVF+STNA FLEEDHIR+HQ  SK
Sbjct: 62  VLVQNPKKLEHHSKLCLFVGYPKESKGVLFYDPQENKVFVSTNAPFLEEDHIRNHQACSK 121

Query: 61  LVLNEISKSATEKPSSSTKVVDKTKISSRKHPSQELREPRRSGRVVHQPDHYLGLRETQV 120
           LVL EIS +AT +PSSSTKV+DKT+   + HPSQELREP RSGRVV Q D YLGL E Q+
Sbjct: 122 LVLEEISNNATNRPSSSTKVIDKTRNIGQTHPSQELREPCRSGRVVRQLDRYLGLSEAQI 181

Query: 121 VILDDGAEDPLTYKQAMNDVDHDQWIKAMNLEMESMFFNSVKTLVYQPNDVKSVGCKWIY 180
           +I DDG EDPLTYKQAMNDVD DQWIKAMNLEMESM+ NSV+ LV QP++V+ +GCKWIY
Sbjct: 182 IIPDDGIEDPLTYKQAMNDVDCDQWIKAMNLEMESMYSNSVRYLVDQPSEVRPIGCKWIY 241

Query: 181 KRKLDQASKVQTFKARLVVKGYTQRE 207
           KRK DQA KVQTFKARLV KGYTQ+E
Sbjct: 242 KRKRDQAGKVQTFKARLVAKGYTQKE 267

[Close]

BLAST of Cmc07g0188661 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 58.5 bits (140), Expect = 7.1e-09
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 127 AEDPLTYKQAMNDVDHDQWIKAMNLEMESMFFNSVKTLVYQPNDVKSVGCKWIYKRKLDQ 186
           A++P TY +A   +    W  AM+ E+ +M       +   P + K +GCKW+YK K + 
Sbjct: 83  AKEPSTYNEAKEFL---VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNS 142

Query: 187 ASKVQTFKARLVVKGYTQRE 207
              ++ +KARLV KGYTQ+E
Sbjct: 143 DGTIERYKARLVAKGYTQQE 159

The following BLAST results are available for this feature:

BLAST of Cmc07g0188661 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	2.5e-88	80.58	gag/pol protein, partial [Bryonia dioica]	[more]
TYK02298.1	5.7e-85	85.79	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060572.1	5.7e-85	85.79	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0043452.1	1.4e-83	76.70	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK03644.1	1.8e-83	77.18	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0188661 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.4e-14	30.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	5.0e-07	41.03	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.6e-05	28.67	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc07g0188661 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	1.2e-88	80.58	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5D3BTJ6	2.8e-85	85.79	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00109...	[more]
A0A5A7UXJ0	2.8e-85	85.79	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00441...	[more]
A0A5A7TJJ9	6.8e-84	76.70	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G007...	[more]
A0A5A7UGR3	8.9e-84	77.18	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G0075...	[more]

BLAST of Cmc07g0188661 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	7.1e-09	37.50	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 159..205 e-value: 2.9E-9 score: 36.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0188661.1	Cmc07g0188661.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding